RNA–Protein interactions for RNA: ENST00000418170.5

HMGXB4-202, Transcript of HMG-box containing 4, humanhuman

TSL 1 (best)

Gene HMGXB4, Length 4,216 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGXB4-202ENST00000418170 PKD1L3Q7Z443 1732 aa9.04□□□□□ -0.96
HMGXB4-202ENST00000418170 NHSL1Q5SYE7 1610 aa9.04□□□□□ -0.96
HMGXB4-202ENST00000418170 SYNRGQ9UMZ2 1314 aa9.04□□□□□ -0.96
HMGXB4-202ENST00000418170 RASSF9O75901 435 aa9.04□□□□□ -0.96
HMGXB4-202ENST00000418170 ATP1A1P05023 1023 aaKnown RBP9.04□□□□□ -0.96
HMGXB4-202ENST00000418170 EPHA10Q5JZY3 1008 aa9.04□□□□□ -0.96
HMGXB4-202ENST00000418170 TTC19Q6DKK2 380 aaPredicted RBP9.04□□□□□ -0.96
HMGXB4-202ENST00000418170 TEX11Q8IYF3 940 aa9.04□□□□□ -0.96
HMGXB4-202ENST00000418170 THEMISQ8N1K5 641 aaPredicted RBP9.04□□□□□ -0.96
HMGXB4-202ENST00000418170 SERTAD1Q9UHV2 236 aa9.04□□□□□ -0.96
HMGXB4-202ENST00000418170 GUCA1BQ9UMX6 200 aa9.04□□□□□ -0.96
HMGXB4-202ENST00000418170 SCN11AQ9UI33 1791 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 BTBD11A6QL63 1104 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 KIF3CO14782 793 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 POLR2DO15514 142 aaKnown RBP9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 IGKV5-2P06315 115 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 ERCC3P19447 782 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 RFX5P48382 616 aaPredicted RBP9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 HSP90AB3PQ58FF7 597 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 SPECC1Q5M775 1068 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 IQCA1Q86XH1 822 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 RAB11FIP4Q86YS3 637 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 HAUS4Q9H6D7 363 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 PAG1Q9NWQ8 432 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 TRIM10Q9UDY6 481 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 REXO2Q9Y3B8 237 aaKnown RBP9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 WDR17Q8IZU2 1322 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 GOLIM4O00461 696 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 SRGAP2O75044 1071 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 DDX58O95786 925 aaKnown RBP9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 PTPN12Q05209 780 aaKnown RBP9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 ACTN3Q08043 901 aaPredicted RBP9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 CRYMQ14894 314 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 KANK3Q6NY19 840 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 MB21D2Q8IYB1 491 aaPredicted RBP9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 NAP1L1P55209 391 aaKnown RBP9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 PDCLQ13371 301 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 CUL4BQ13620 913 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 CCDC40Q4G0X9 1142 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 GRAMD1CQ8IYS0 662 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 STK11IPQ8N1F8 1099 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 RUBCNQ92622 972 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 PXDNQ92626 1479 aa9.03□□□□□ -0.96
HMGXB4-202ENST00000418170 KDM4FA0A1W2PPD8 638 aa9.02□□□□□ -0.96
HMGXB4-202ENST00000418170 NDUFA10O95299 355 aa9.02□□□□□ -0.96
HMGXB4-202ENST00000418170 CALRP27797 417 aaKnown RBP9.02□□□□□ -0.96
HMGXB4-202ENST00000418170 TTMPQ5BVD1 217 aa9.02□□□□□ -0.96
HMGXB4-202ENST00000418170 CEP85LQ5SZL2 805 aa9.02□□□□□ -0.96
HMGXB4-202ENST00000418170 SND1Q7KZF4 910 aaKnown RBP eCLIP9.02□□□□□ -0.96
HMGXB4-202ENST00000418170 CAPZA3Q96KX2 299 aa9.02□□□□□ -0.96
HMGXB4-202ENST00000418170 SEC31BQ9NQW1 1179 aa9.02□□□□□ -0.96
HMGXB4-202ENST00000418170 EPN1Q9Y6I3 576 aaPredicted RBP9.02□□□□□ -0.96
HMGXB4-202ENST00000418170 C5P01031 1676 aa9.02□□□□□ -0.97
HMGXB4-202ENST00000418170 RNF225M0QZC1 329 aaPredicted RBP9.02□□□□□ -0.97
HMGXB4-202ENST00000418170 ACTN4O43707 911 aaKnown RBP9.02□□□□□ -0.97
HMGXB4-202ENST00000418170 ANTXR2P58335 489 aa9.02□□□□□ -0.97
HMGXB4-202ENST00000418170 TRIM14Q14142 442 aa9.02□□□□□ -0.97
HMGXB4-202ENST00000418170 C11orf91Q3C1V1 193 aa9.02□□□□□ -0.97
HMGXB4-202ENST00000418170 JAKMIP2Q96AA8 810 aa9.02□□□□□ -0.97
HMGXB4-202ENST00000418170 GGA2Q9UJY4 613 aa9.02□□□□□ -0.97
HMGXB4-202ENST00000418170 WDR19Q8NEZ3 1342 aa9.02□□□□□ -0.97
HMGXB4-202ENST00000418170 HEG1Q9ULI3 1381 aa9.02□□□□□ -0.97
HMGXB4-202ENST00000418170 NAA35Q5VZE5 725 aa9.02□□□□□ -0.97
HMGXB4-202ENST00000418170 ALS2CLQ60I27 953 aa9.02□□□□□ -0.97
HMGXB4-202ENST00000418170 IQCEQ6IPM2 695 aa9.02□□□□□ -0.97
HMGXB4-202ENST00000418170 CCDC13Q8IYE1 715 aa9.02□□□□□ -0.97
HMGXB4-202ENST00000418170 RRP36Q96EU6 259 aaKnown RBP9.02□□□□□ -0.97
HMGXB4-202ENST00000418170 FBXO2Q9UK22 296 aaPredicted RBP9.02□□□□□ -0.97
HMGXB4-202ENST00000418170 SPEF2Q9C093 1822 aa9.02□□□□□ -0.97
HMGXB4-202ENST00000418170 CDKL5O76039 1030 aa9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 PTPREP23469 700 aa9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 CCDC70Q6NSX1 233 aa9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 FMNL3Q8IVF7 1028 aa9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 ARL8AQ96BM9 186 aa9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 NUP88Q99567 741 aaPredicted RBP9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 EPN3Q9H201 632 aa9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 CPDO75976 1380 aa9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 NEURL1BA8MQ27 555 aa9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 PDE2AO00408 941 aaPredicted RBP9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 CD44P16070 742 aaKnown RBP9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 PAX7P23759 505 aa9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 GRIN1Q05586 938 aa9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 GCKRQ14397 625 aa9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 IMMTQ16891 758 aaKnown RBP9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 ZNF662Q6ZS27 426 aa9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 RBM33Q96EV2 1170 aaKnown RBP9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 LSP1P33241 339 aa9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 KRT9P35527 623 aa9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 STX17P56962 302 aa9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 DRP2Q13474 957 aa9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 KLHL10Q6JEL2 608 aa9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 ZNF579Q8NAF0 562 aaKnown RBP9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 EHBP1Q8NDI1 1231 aa9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 CAGE1Q8TC20 777 aa9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 CHP1Q99653 195 aa9.01□□□□□ -0.97
HMGXB4-202ENST00000418170 M0R2C6 588 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 RNF113AO15541 343 aaKnown RBP9□□□□□ -0.97
HMGXB4-202ENST00000418170 NEBLO76041 1014 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 CDC25AP30304 524 aa9□□□□□ -0.97
HMGXB4-202ENST00000418170 HAND2P61296 217 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms