RNA–Protein interactions for RNA: ENST00000416649.6

NCKIPSD-204, Transcript of NCK interacting protein with SH3 domain, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene NCKIPSD, Length 2,925 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-204ENST00000416649 RPAINQ86UA6 219 aa16.6■□□□□ 0.25
NCKIPSD-204ENST00000416649 SYNE4Q8N205 404 aa16.6■□□□□ 0.25
NCKIPSD-204ENST00000416649 MMS19Q96T76 1030 aa16.6■□□□□ 0.25
NCKIPSD-204ENST00000416649 VIPAS39Q9H9C1 493 aa16.6■□□□□ 0.25
NCKIPSD-204ENST00000416649 SERTAD1Q9UHV2 236 aa16.6■□□□□ 0.25
NCKIPSD-204ENST00000416649 GOLGB1Q14789 3259 aaKnown RBP16.6■□□□□ 0.25
NCKIPSD-204ENST00000416649 RESP18Q5W5W9 173 aa16.6■□□□□ 0.25
NCKIPSD-204ENST00000416649 LMBR1LQ6UX01 489 aa16.6■□□□□ 0.25
NCKIPSD-204ENST00000416649 KBTBD3Q8NAB2 608 aa16.6■□□□□ 0.25
NCKIPSD-204ENST00000416649 ENOX1Q8TC92 643 aaKnown RBP16.6■□□□□ 0.25
NCKIPSD-204ENST00000416649 PHKBQ93100 1093 aa16.6■□□□□ 0.25
NCKIPSD-204ENST00000416649 ZNF594Q96JF6 807 aaPredicted RBP16.6■□□□□ 0.25
NCKIPSD-204ENST00000416649 SELENOOQ9BVL4 669 aa16.6■□□□□ 0.25
NCKIPSD-204ENST00000416649 TFR2Q9UP52 801 aa16.6■□□□□ 0.25
NCKIPSD-204ENST00000416649 ZEB2O60315 1214 aa16.59■□□□□ 0.25
NCKIPSD-204ENST00000416649 MFAP3LO75121 409 aa16.59■□□□□ 0.25
NCKIPSD-204ENST00000416649 MRPS25P82663 173 aaKnown RBP16.59■□□□□ 0.25
NCKIPSD-204ENST00000416649 MED15Q96RN5 788 aa16.59■□□□□ 0.25
NCKIPSD-204ENST00000416649 DACH1Q9UI36 760 aa16.59■□□□□ 0.25
NCKIPSD-204ENST00000416649 PPARDQ03181 441 aa16.59■□□□□ 0.25
NCKIPSD-204ENST00000416649 FAM182BQ5T319 152 aa16.59■□□□□ 0.25
NCKIPSD-204ENST00000416649 RNF187Q5TA31 235 aaPredicted RBP16.59■□□□□ 0.25
NCKIPSD-204ENST00000416649 NUP88Q99567 741 aaPredicted RBP16.59■□□□□ 0.25
NCKIPSD-204ENST00000416649 NAA15Q9BXJ9 866 aaKnown RBP16.59■□□□□ 0.25
NCKIPSD-204ENST00000416649 TRDNQ13061 729 aa16.59■□□□□ 0.25
NCKIPSD-204ENST00000416649 PPFIA1Q13136 1202 aa16.59■□□□□ 0.25
NCKIPSD-204ENST00000416649 KRT40Q6A162 431 aa16.59■□□□□ 0.25
NCKIPSD-204ENST00000416649 MLKLQ8NB16 471 aa16.59■□□□□ 0.25
NCKIPSD-204ENST00000416649 A0A1B0GTH6 734 aa16.58■□□□□ 0.24
NCKIPSD-204ENST00000416649 GRIN1Q05586 938 aa16.58■□□□□ 0.24
NCKIPSD-204ENST00000416649 HAUS7Q99871 368 aa16.58■□□□□ 0.24
NCKIPSD-204ENST00000416649 AGPSO00116 658 aa16.58■□□□□ 0.24
NCKIPSD-204ENST00000416649 ATP1A2P50993 1020 aa16.58■□□□□ 0.24
NCKIPSD-204ENST00000416649 PDCLQ13371 301 aa16.58■□□□□ 0.24
NCKIPSD-204ENST00000416649 SND1Q7KZF4 910 aaKnown RBP eCLIP16.58■□□□□ 0.24
NCKIPSD-204ENST00000416649 ANKRD18AQ8IVF6 992 aa16.58■□□□□ 0.24
NCKIPSD-204ENST00000416649 SMYD4Q8IYR2 804 aaPredicted RBP16.58■□□□□ 0.24
NCKIPSD-204ENST00000416649 PLBD2Q8NHP8 589 aa16.58■□□□□ 0.24
NCKIPSD-204ENST00000416649 N4BP2L2Q92802 583 aaPredicted RBP16.58■□□□□ 0.24
NCKIPSD-204ENST00000416649 GNL3LQ9NVN8 582 aaKnown RBP16.58■□□□□ 0.24
NCKIPSD-204ENST00000416649 EP400Q96L91 3159 aa16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 UBAP1LF5GYI3 381 aa16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 EIF3HO15372 352 aaKnown RBP eCLIP16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 PPP6R2O75170 966 aa16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 PTPAQ15257 358 aa16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 FILIP1LQ4L180 1135 aa16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 FAM89AQ96GI7 184 aa16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 C8orf37Q96NL8 207 aa16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 DSCC1Q9BVC3 393 aa16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 NBPF3Q9H094 633 aa16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 DENND2AQ9ULE3 1009 aa16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 TBC1D2BQ9UPU7 963 aa16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 HPS5Q9UPZ3 1129 aa16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 SIPA1L3O60292 1781 aaPredicted RBP16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 SHOX2O60902 331 aaPredicted RBP16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 GYPCP04921 128 aa16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 CASP1P29466 404 aa16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 AFMP43652 599 aa16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 ERVK-24P63145 666 aa16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 FKBP4Q02790 459 aaKnown RBP eCLIP16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 RALYLQ86SE5 291 aaKnown RBP16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 CNPY4Q8N129 248 aa16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 PAG1Q9NWQ8 432 aa16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 WWC3Q9ULE0 1092 aa16.57■□□□□ 0.24
NCKIPSD-204ENST00000416649 PATL2C9JE40 543 aaKnown RBP16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 ACTN3Q08043 901 aaPredicted RBP16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 WASHC4Q2M389 1173 aa16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 CNGA4Q8IV77 575 aa16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 ZC3H4Q9UPT8 1303 aaKnown RBP16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 FRMD3A2A2Y4 597 aa16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 ATP1A1P05023 1023 aaKnown RBP16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 MCM3P25205 808 aa16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 NF2P35240 595 aa16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 ARHGAP25P42331 645 aa16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 SMIM5Q71RC9 77 aa16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 CEP57Q86XR8 500 aa16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 ROBO1Q9Y6N7 1651 aa16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 PES1O00541 588 aaKnown RBP16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 SSBP05455 408 aaKnown RBP eCLIP16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 TRIM29Q14134 588 aa16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 KCTD16Q68DU8 428 aa16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 CCDC82Q8N4S0 544 aa16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 KRI1Q8N9T8 703 aaKnown RBP16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 PRPF38AQ8NAV1 312 aaKnown RBP16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 SLC4A9Q96Q91 983 aa16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 RUFY1Q96T51 708 aa16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 VPS16Q9H269 839 aa16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 SLC24A3Q9HC58 644 aa16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 SEC31BQ9NQW1 1179 aa16.56■□□□□ 0.24
NCKIPSD-204ENST00000416649 MAST3O60307 1309 aa16.55■□□□□ 0.24
NCKIPSD-204ENST00000416649 UBE2Q2LH0YL09 131 aa16.55■□□□□ 0.24
NCKIPSD-204ENST00000416649 AMPD2Q01433 879 aa16.55■□□□□ 0.24
NCKIPSD-204ENST00000416649 MICU3Q86XE3 530 aa16.55■□□□□ 0.24
NCKIPSD-204ENST00000416649 SAR1BQ9Y6B6 198 aa16.55■□□□□ 0.24
NCKIPSD-204ENST00000416649 SH3TC1Q8TE82 1336 aa16.55■□□□□ 0.24
NCKIPSD-204ENST00000416649 MATR3P43243 847 aaKnown RBP eCLIP16.55■□□□□ 0.24
NCKIPSD-204ENST00000416649 SATB1Q01826 763 aa16.55■□□□□ 0.24
NCKIPSD-204ENST00000416649 NEDD9Q14511 834 aa16.55■□□□□ 0.24
NCKIPSD-204ENST00000416649 NKX1-1Q15270 411 aaPredicted RBP16.55■□□□□ 0.24
NCKIPSD-204ENST00000416649 RRP36Q96EU6 259 aaKnown RBP16.55■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms