RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 USP6NLQ92738 828 aa12.54□□□□□ -0.4
NEDD8-202ENST00000396828 EDC3Q96F86 508 aaKnown RBP12.54□□□□□ -0.4
NEDD8-202ENST00000396828 PAGR1Q9BTK6 254 aa12.54□□□□□ -0.4
NEDD8-202ENST00000396828 TRIM34Q9BYJ4 488 aa12.54□□□□□ -0.4
NEDD8-202ENST00000396828 PCDHB15Q9Y5E8 787 aa12.54□□□□□ -0.4
NEDD8-202ENST00000396828 RPTORQ8N122 1335 aa12.54□□□□□ -0.4
NEDD8-202ENST00000396828 APBB1O00213 710 aa12.53□□□□□ -0.4
NEDD8-202ENST00000396828 EVI5O60447 810 aa12.53□□□□□ -0.4
NEDD8-202ENST00000396828 HLA-DOAP06340 250 aa12.53□□□□□ -0.4
NEDD8-202ENST00000396828 GUCY1A2P33402 732 aa12.53□□□□□ -0.4
NEDD8-202ENST00000396828 ERVK-9P63128 1117 aa12.53□□□□□ -0.4
NEDD8-202ENST00000396828 ERVK-24P63145 666 aa12.53□□□□□ -0.4
NEDD8-202ENST00000396828 RAB3GAP1Q15042 981 aa12.53□□□□□ -0.4
NEDD8-202ENST00000396828 CENPQQ7L2Z9 268 aaPredicted RBP12.53□□□□□ -0.4
NEDD8-202ENST00000396828 RHPN1Q8TCX5 695 aa12.53□□□□□ -0.4
NEDD8-202ENST00000396828 BCL11AQ9H165 835 aa12.53□□□□□ -0.4
NEDD8-202ENST00000396828 HMX1Q9NP08 348 aaPredicted RBP12.53□□□□□ -0.4
NEDD8-202ENST00000396828 STAP2Q9UGK3 403 aa12.53□□□□□ -0.4
NEDD8-202ENST00000396828 SERPINB13Q9UIV8 391 aa12.53□□□□□ -0.4
NEDD8-202ENST00000396828 NR2E3Q9Y5X4 410 aa12.53□□□□□ -0.4
NEDD8-202ENST00000396828 SMIM22K7EJ46 135 aa12.52□□□□□ -0.41
NEDD8-202ENST00000396828 SOX1O00570 391 aaPredicted RBP12.52□□□□□ -0.41
NEDD8-202ENST00000396828 HMMRO75330 724 aa12.52□□□□□ -0.41
NEDD8-202ENST00000396828 CHGBP05060 677 aa12.52□□□□□ -0.41
NEDD8-202ENST00000396828 PRKAR2AP13861 404 aaKnown RBP12.52□□□□□ -0.41
NEDD8-202ENST00000396828 MAP3K12Q12852 859 aa12.52□□□□□ -0.41
NEDD8-202ENST00000396828 HDAC1Q13547 482 aaPredicted RBP12.52□□□□□ -0.41
NEDD8-202ENST00000396828 MORN1Q5T089 497 aa12.52□□□□□ -0.41
NEDD8-202ENST00000396828 USP17L2Q6R6M4 530 aa12.52□□□□□ -0.41
NEDD8-202ENST00000396828 GPR142Q7Z601 462 aa12.52□□□□□ -0.41
NEDD8-202ENST00000396828 EHD4Q9H223 541 aa12.52□□□□□ -0.41
NEDD8-202ENST00000396828 GINM1Q9NU53 330 aa12.52□□□□□ -0.41
NEDD8-202ENST00000396828 NAV1Q8NEY1 1877 aa12.51□□□□□ -0.41
NEDD8-202ENST00000396828 TCRBV5S4A2TA0A5A2 114 aa12.51□□□□□ -0.41
NEDD8-202ENST00000396828 IGSF3O75054 1194 aa12.51□□□□□ -0.41
NEDD8-202ENST00000396828 CYP2D6P10635 497 aa12.51□□□□□ -0.41
NEDD8-202ENST00000396828 PDE6AP16499 860 aa12.51□□□□□ -0.41
NEDD8-202ENST00000396828 CCND3P30281 292 aaPredicted RBP12.51□□□□□ -0.41
NEDD8-202ENST00000396828 CACNB2Q08289 660 aaPredicted RBP12.51□□□□□ -0.41
NEDD8-202ENST00000396828 ABCB5Q2M3G0 1257 aa12.51□□□□□ -0.41
NEDD8-202ENST00000396828 CERKLQ49MI3 558 aaPredicted RBP12.51□□□□□ -0.41
NEDD8-202ENST00000396828 NECAB2Q7Z6G3 386 aa12.51□□□□□ -0.41
NEDD8-202ENST00000396828 SDR42E1Q8WUS8 393 aa12.51□□□□□ -0.41
NEDD8-202ENST00000396828 C12orf42Q96LP6 360 aa12.51□□□□□ -0.41
NEDD8-202ENST00000396828 NUDT12Q9BQG2 462 aa12.51□□□□□ -0.41
NEDD8-202ENST00000396828 FLRT1Q9NZU1 646 aa12.51□□□□□ -0.41
NEDD8-202ENST00000396828 BTBD7Q9P203 1132 aa12.51□□□□□ -0.41
NEDD8-202ENST00000396828 OGDHLQ9ULD0 1010 aa12.51□□□□□ -0.41
NEDD8-202ENST00000396828 MAGEB6P1A0A0J9YX57 407 aa12.5□□□□□ -0.41
NEDD8-202ENST00000396828 A0A1W2PRG0 241 aa12.5□□□□□ -0.41
NEDD8-202ENST00000396828 GOLIM4O00461 696 aa12.5□□□□□ -0.41
NEDD8-202ENST00000396828 IGHDP01880 384 aa12.5□□□□□ -0.41
NEDD8-202ENST00000396828 XRCC5P13010 732 aaKnown RBP12.5□□□□□ -0.41
NEDD8-202ENST00000396828 VCAM1P19320 739 aa12.5□□□□□ -0.41
NEDD8-202ENST00000396828 MAPK4P31152 587 aa12.5□□□□□ -0.41
NEDD8-202ENST00000396828 GABPAQ06546 454 aa12.5□□□□□ -0.41
NEDD8-202ENST00000396828 SEPT2Q15019 361 aa12.5□□□□□ -0.41
NEDD8-202ENST00000396828 KIAA1755Q5JYT7 1200 aa12.5□□□□□ -0.41
NEDD8-202ENST00000396828 SLC9C2Q5TAH2 1124 aa12.5□□□□□ -0.41
NEDD8-202ENST00000396828 LHX8Q68G74 356 aa12.5□□□□□ -0.41
NEDD8-202ENST00000396828 CATSPERGQ6ZRH7 1159 aa12.5□□□□□ -0.41
NEDD8-202ENST00000396828 ERC1Q8IUD2 1116 aa12.5□□□□□ -0.41
NEDD8-202ENST00000396828 C7orf61Q8IZ16 206 aa12.5□□□□□ -0.41
NEDD8-202ENST00000396828 LCORLQ8N3X6 602 aa12.5□□□□□ -0.41
NEDD8-202ENST00000396828 ANKLE1Q8NAG6 615 aa12.5□□□□□ -0.41
NEDD8-202ENST00000396828 SLC44A5Q8NCS7 719 aa12.5□□□□□ -0.41
NEDD8-202ENST00000396828 FEZ1Q99689 392 aa12.5□□□□□ -0.41
NEDD8-202ENST00000396828 ZMYND8Q9ULU4 1186 aaPredicted RBP12.5□□□□□ -0.41
NEDD8-202ENST00000396828 PFASO15067 1338 aa12.5□□□□□ -0.41
NEDD8-202ENST00000396828 ZNF532Q9HCE3 1301 aa12.5□□□□□ -0.41
NEDD8-202ENST00000396828 USP17L15C9J2P7 530 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 USP17L13C9JLJ4 530 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 USP17L11C9JVI0 530 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 USP17L18D6R9N7 530 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 USP17L22D6RA61 530 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 USP17L17D6RBQ6 530 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 USP17L19D6RCP7 530 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 USP17L20D6RJB6 530 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 PRKAB2O43741 272 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 POLR3DP05423 398 aaPredicted RBP12.49□□□□□ -0.41
NEDD8-202ENST00000396828 SYN1P17600 705 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 USP17L24Q0WX57 530 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 PLEKHH3Q7Z736 793 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 TTC6Q86TZ1 520 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 CLEC10AQ8IUN9 316 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 SOCS4Q8WXH5 440 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 DYNLL2Q96FJ2 89 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 LRCH3Q96II8 777 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 DNAJC2Q99543 621 aaKnown RBP12.49□□□□□ -0.41
NEDD8-202ENST00000396828 NBPF3Q9H094 633 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 KIAA1683Q9H0B3 1180 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 C11orf49Q9H6J7 331 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 RPAP3Q9H6T3 665 aaPredicted RBP12.49□□□□□ -0.41
NEDD8-202ENST00000396828 RABGAP1Q9Y3P9 1069 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 UNC80Q8N2C7 3258 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 EYSQ5T1H1 3165 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 RLFQ13129 1914 aa12.49□□□□□ -0.41
NEDD8-202ENST00000396828 SPDYE16A6NNV3 312 aaPredicted RBP12.48□□□□□ -0.41
NEDD8-202ENST00000396828 ZKSCAN1P17029 563 aaPredicted RBP12.48□□□□□ -0.41
NEDD8-202ENST00000396828 SIAH1Q8IUQ4 282 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms