RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 PCCAP05165 728 aaPredicted RBP9.52□□□□□ -0.88
HMGB1-203ENST00000341423 CTNNA2P26232 953 aa9.52□□□□□ -0.88
HMGB1-203ENST00000341423 HS2ST1Q7LGA3 356 aa9.52□□□□□ -0.88
HMGB1-203ENST00000341423 MB21D1Q8N884 522 aa9.52□□□□□ -0.88
HMGB1-203ENST00000341423 OR6J1Q8NGC5 347 aa9.52□□□□□ -0.88
HMGB1-203ENST00000341423 SOS1Q07889 1333 aaPredicted RBP9.52□□□□□ -0.88
HMGB1-203ENST00000341423 GNRH1P01148 92 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 GYG1P46976 350 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 ARHGAP15Q53QZ3 475 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 TMC7Q7Z402 723 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 ANKRD13CQ8N6S4 541 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 NSUN7Q8NE18 718 aaKnown RBP9.52□□□□□ -0.89
HMGB1-203ENST00000341423 KLRG1Q96E93 195 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 GBP4Q96PP9 640 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 MED10Q9BTT4 135 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 USP18Q9UMW8 372 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 IPPQ9Y573 584 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 DDX39AO00148 427 aaKnown RBP9.52□□□□□ -0.89
HMGB1-203ENST00000341423 STRIP1Q5VSL9 837 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 RSRC2Q7L4I2 434 aaKnown RBP9.52□□□□□ -0.89
HMGB1-203ENST00000341423 DEFB128Q7Z7B8 93 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 CCDC112Q8NEF3 446 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 NOB1Q9ULX3 412 aaKnown RBP9.52□□□□□ -0.89
HMGB1-203ENST00000341423 MYO6Q9UM54 1294 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 ZSCAN21Q9Y5A6 473 aaPredicted RBP9.52□□□□□ -0.89
HMGB1-203ENST00000341423 HMGCS2P54868 508 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 AAMPQ13685 434 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 RASGRF1Q13972 1273 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 TBC1D9BQ66K14 1250 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 TPCN1Q9ULQ1 816 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 CHMP2AO43633 222 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 GDF11O95390 407 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 CPT1AP50416 773 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 CCDC85BQ15834 202 aaPredicted RBP9.52□□□□□ -0.89
HMGB1-203ENST00000341423 TWF2Q6IBS0 349 aaKnown RBP9.52□□□□□ -0.89
HMGB1-203ENST00000341423 PRR5LQ6MZQ0 368 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 TSEN34Q9BSV6 310 aaKnown RBP9.52□□□□□ -0.89
HMGB1-203ENST00000341423 VPS33BQ9H267 617 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 SERPINB13Q9UIV8 391 aa9.52□□□□□ -0.89
HMGB1-203ENST00000341423 ATP8B3O60423 1300 aa9.51□□□□□ -0.89
HMGB1-203ENST00000341423 CCDC15Q0P6D6 951 aa9.51□□□□□ -0.89
HMGB1-203ENST00000341423 EXOC7Q9UPT5 735 aa9.51□□□□□ -0.89
HMGB1-203ENST00000341423 PTPRZ1P23471 2315 aaPredicted RBP9.51□□□□□ -0.89
HMGB1-203ENST00000341423 RNF17Q9BXT8 1623 aaKnown RBP9.51□□□□□ -0.89
HMGB1-203ENST00000341423 HECW2Q9P2P5 1572 aa9.51□□□□□ -0.89
HMGB1-203ENST00000341423 ARHGEF35A5YM69 484 aa9.51□□□□□ -0.89
HMGB1-203ENST00000341423 PTPREP23469 700 aa9.51□□□□□ -0.89
HMGB1-203ENST00000341423 STAT3P40763 770 aa9.51□□□□□ -0.89
HMGB1-203ENST00000341423 DDX42Q86XP3 938 aaKnown RBP eCLIP9.51□□□□□ -0.89
HMGB1-203ENST00000341423 SPICE1Q8N0Z3 855 aa9.51□□□□□ -0.89
HMGB1-203ENST00000341423 GIMAP8Q8ND71 665 aaPredicted RBP9.51□□□□□ -0.89
HMGB1-203ENST00000341423 POLKQ9UBT6 870 aa9.51□□□□□ -0.89
HMGB1-203ENST00000341423 TRAPPC3O43617 180 aa9.51□□□□□ -0.89
HMGB1-203ENST00000341423 CWC27Q6UX04 472 aaKnown RBP9.51□□□□□ -0.89
HMGB1-203ENST00000341423 NOX5Q96PH1 765 aa9.51□□□□□ -0.89
HMGB1-203ENST00000341423 EXOC6BQ9Y2D4 811 aa9.51□□□□□ -0.89
HMGB1-203ENST00000341423 ACTN2P35609 894 aa9.51□□□□□ -0.89
HMGB1-203ENST00000341423 IFRD2Q12894 506 aaPredicted RBP9.51□□□□□ -0.89
HMGB1-203ENST00000341423 CATSPER4Q7RTX7 472 aa9.51□□□□□ -0.89
HMGB1-203ENST00000341423 TXLNBQ8N3L3 684 aa9.51□□□□□ -0.89
HMGB1-203ENST00000341423 CDCA5Q96FF9 252 aa9.51□□□□□ -0.89
HMGB1-203ENST00000341423 CCDC77Q9BR77 488 aa9.51□□□□□ -0.89
HMGB1-203ENST00000341423 TAF1DQ9H5J8 278 aaPredicted RBP9.51□□□□□ -0.89
HMGB1-203ENST00000341423 LGR6Q9HBX8 967 aa9.51□□□□□ -0.89
HMGB1-203ENST00000341423 MOSPD1Q9UJG1 213 aa9.51□□□□□ -0.89
HMGB1-203ENST00000341423 ADAMTS8Q9UP79 889 aa9.51□□□□□ -0.89
HMGB1-203ENST00000341423 ZC3H4Q9UPT8 1303 aaKnown RBP9.51□□□□□ -0.89
HMGB1-203ENST00000341423 ZW10O43264 779 aa9.5□□□□□ -0.89
HMGB1-203ENST00000341423 GADD45BO75293 160 aaPredicted RBP9.5□□□□□ -0.89
HMGB1-203ENST00000341423 MBD4O95243 580 aa9.5□□□□□ -0.89
HMGB1-203ENST00000341423 ALDH7A1P49419 539 aaKnown RBP9.5□□□□□ -0.89
HMGB1-203ENST00000341423 ARL4DP49703 201 aa9.5□□□□□ -0.89
HMGB1-203ENST00000341423 TMEM132BQ14DG7 1078 aa9.5□□□□□ -0.89
HMGB1-203ENST00000341423 OTUD6BQ8N6M0 293 aa9.5□□□□□ -0.89
HMGB1-203ENST00000341423 CCND2P30279 289 aa9.5□□□□□ -0.89
HMGB1-203ENST00000341423 VPS36Q86VN1 386 aa9.5□□□□□ -0.89
HMGB1-203ENST00000341423 CEP57Q86XR8 500 aa9.5□□□□□ -0.89
HMGB1-203ENST00000341423 RTL9Q8NET4 1388 aa9.5□□□□□ -0.89
HMGB1-203ENST00000341423 PARD3BQ8TEW8 1205 aa9.5□□□□□ -0.89
HMGB1-203ENST00000341423 PRPF31Q8WWY3 499 aaKnown RBP9.5□□□□□ -0.89
HMGB1-203ENST00000341423 RPLP2P05387 115 aaKnown RBP9.5□□□□□ -0.89
HMGB1-203ENST00000341423 FBXO46Q6PJ61 603 aaPredicted RBP9.5□□□□□ -0.89
HMGB1-203ENST00000341423 FBXO11Q86XK2 927 aa9.5□□□□□ -0.89
HMGB1-203ENST00000341423 SH3TC2Q8TF17 1288 aa9.5□□□□□ -0.89
HMGB1-203ENST00000341423 ABHD8Q96I13 439 aa9.5□□□□□ -0.89
HMGB1-203ENST00000341423 ADCY9O60503 1353 aa9.5□□□□□ -0.89
HMGB1-203ENST00000341423 FOXD4L5Q5VV16 416 aaPredicted RBP9.5□□□□□ -0.89
HMGB1-203ENST00000341423 KRT79Q5XKE5 535 aa9.5□□□□□ -0.89
HMGB1-203ENST00000341423 ZC3H14Q6PJT7 736 aaKnown RBP9.5□□□□□ -0.89
HMGB1-203ENST00000341423 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.5□□□□□ -0.89
HMGB1-203ENST00000341423 ZNF280CQ8ND82 737 aa9.5□□□□□ -0.89
HMGB1-203ENST00000341423 CSGALNACT1Q8TDX6 532 aa9.5□□□□□ -0.89
HMGB1-203ENST00000341423 FOXD4L4Q8WXT5 416 aaPredicted RBP9.5□□□□□ -0.89
HMGB1-203ENST00000341423 OPTNQ96CV9 577 aa9.5□□□□□ -0.89
HMGB1-203ENST00000341423 C1orf115Q9H7X2 142 aa9.5□□□□□ -0.89
HMGB1-203ENST00000341423 ARPP21Q9UBL0 812 aaPredicted RBP9.5□□□□□ -0.89
HMGB1-203ENST00000341423 PCDHB7Q9Y5E2 793 aa9.5□□□□□ -0.89
HMGB1-203ENST00000341423 NEMP1O14524 444 aa9.49□□□□□ -0.89
HMGB1-203ENST00000341423 PRPF6O94906 941 aaKnown RBP9.49□□□□□ -0.89
HMGB1-203ENST00000341423 HAND2P61296 217 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 103.8 ms