RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 TRIM34Q9BYJ4 488 aa19.44■□□□□ 0.7
PDLIM1-201ENST00000329399 PDHXO00330 501 aa19.43■□□□□ 0.7
PDLIM1-201ENST00000329399 TAF1CQ15572 869 aaPredicted RBP19.43■□□□□ 0.7
PDLIM1-201ENST00000329399 CERKLQ49MI3 558 aaPredicted RBP19.43■□□□□ 0.7
PDLIM1-201ENST00000329399 TREML2Q5T2D2 321 aa19.43■□□□□ 0.7
PDLIM1-201ENST00000329399 VPS53Q5VIR6 699 aa19.43■□□□□ 0.7
PDLIM1-201ENST00000329399 CREB3L3Q68CJ9 461 aa19.43■□□□□ 0.7
PDLIM1-201ENST00000329399 OTUD7BQ6GQQ9 843 aa19.43■□□□□ 0.7
PDLIM1-201ENST00000329399 STK11IPQ8N1F8 1099 aa19.43■□□□□ 0.7
PDLIM1-201ENST00000329399 CIZ1Q9ULV3 898 aaPredicted RBP19.43■□□□□ 0.7
PDLIM1-201ENST00000329399 SLC4A3P48751 1232 aa19.42■□□□□ 0.7
PDLIM1-201ENST00000329399 GADL1Q6ZQY3 521 aa19.42■□□□□ 0.7
PDLIM1-201ENST00000329399 ANKRD23Q86SG2 305 aa19.42■□□□□ 0.7
PDLIM1-201ENST00000329399 ALDH8A1Q9H2A2 487 aaPredicted RBP19.42■□□□□ 0.7
PDLIM1-201ENST00000329399 ATAD5Q96QE3 1844 aa19.42■□□□□ 0.7
PDLIM1-201ENST00000329399 PATL2C9JE40 543 aaKnown RBP19.41■□□□□ 0.7
PDLIM1-201ENST00000329399 ASNSP08243 561 aa19.41■□□□□ 0.7
PDLIM1-201ENST00000329399 CYP2C8P10632 490 aa19.41■□□□□ 0.7
PDLIM1-201ENST00000329399 CDK8P49336 464 aa19.41■□□□□ 0.7
PDLIM1-201ENST00000329399 HMGCS2P54868 508 aa19.41■□□□□ 0.7
PDLIM1-201ENST00000329399 ZNF589Q86UQ0 364 aaPredicted RBP19.41■□□□□ 0.7
PDLIM1-201ENST00000329399 ACER1Q8TDN7 264 aa19.41■□□□□ 0.7
PDLIM1-201ENST00000329399 WDR18Q9BV38 432 aa19.41■□□□□ 0.7
PDLIM1-201ENST00000329399 PTPRFP10586 1907 aa19.41■□□□□ 0.7
PDLIM1-201ENST00000329399 HSP90AA1P07900 732 aaKnown RBP19.41■□□□□ 0.7
PDLIM1-201ENST00000329399 HMGB1P09429 215 aaKnown RBP19.41■□□□□ 0.7
PDLIM1-201ENST00000329399 SEPT2Q15019 361 aa19.41■□□□□ 0.7
PDLIM1-201ENST00000329399 ABCB5Q2M3G0 1257 aa19.41■□□□□ 0.7
PDLIM1-201ENST00000329399 CLEC10AQ8IUN9 316 aa19.41■□□□□ 0.7
PDLIM1-201ENST00000329399 IFNL3Q8IZI9 196 aa19.41■□□□□ 0.7
PDLIM1-201ENST00000329399 CWC22Q9HCG8 908 aaKnown RBP19.41■□□□□ 0.7
PDLIM1-201ENST00000329399 ZSWIM6Q9HCJ5 1215 aa19.41■□□□□ 0.7
PDLIM1-201ENST00000329399 BRCA2P51587 3418 aa19.4■□□□□ 0.7
PDLIM1-201ENST00000329399 MINDY4BA8MYZ0 360 aa19.4■□□□□ 0.7
PDLIM1-201ENST00000329399 SLC27A2O14975 620 aa19.4■□□□□ 0.7
PDLIM1-201ENST00000329399 FKTNO75072 461 aa19.4■□□□□ 0.7
PDLIM1-201ENST00000329399 APPP05067 770 aa19.4■□□□□ 0.7
PDLIM1-201ENST00000329399 AKR1B1P15121 316 aa19.4■□□□□ 0.7
PDLIM1-201ENST00000329399 MTMR2Q13614 643 aa19.4■□□□□ 0.7
PDLIM1-201ENST00000329399 RAB3GAP1Q15042 981 aa19.4■□□□□ 0.7
PDLIM1-201ENST00000329399 SBK1Q52WX2 424 aa19.4■□□□□ 0.7
PDLIM1-201ENST00000329399 NOM1Q5C9Z4 860 aaKnown RBP19.4■□□□□ 0.7
PDLIM1-201ENST00000329399 C16orf86Q6ZW13 317 aa19.4■□□□□ 0.7
PDLIM1-201ENST00000329399 SIAH1Q8IUQ4 282 aa19.4■□□□□ 0.7
PDLIM1-201ENST00000329399 MCOLN1Q9GZU1 580 aa19.4■□□□□ 0.7
PDLIM1-201ENST00000329399 ZFYVE28Q9HCC9 887 aa19.4■□□□□ 0.7
PDLIM1-201ENST00000329399 CYP46A1Q9Y6A2 500 aa19.4■□□□□ 0.7
PDLIM1-201ENST00000329399 TACC3Q9Y6A5 838 aa19.4■□□□□ 0.7
PDLIM1-201ENST00000329399 TLR2O60603 784 aa19.39■□□□□ 0.69
PDLIM1-201ENST00000329399 GNAT2P19087 354 aa19.39■□□□□ 0.69
PDLIM1-201ENST00000329399 BACE1P56817 501 aa19.39■□□□□ 0.69
PDLIM1-201ENST00000329399 ANKRD1Q15327 319 aa19.39■□□□□ 0.69
PDLIM1-201ENST00000329399 GIMAP6Q6P9H5 292 aa19.39■□□□□ 0.69
PDLIM1-201ENST00000329399 INCENPQ9NQS7 918 aa19.39■□□□□ 0.69
PDLIM1-201ENST00000329399 CPA4Q9UI42 421 aa19.39■□□□□ 0.69
PDLIM1-201ENST00000329399 ADGRA2Q96PE1 1338 aa19.38■□□□□ 0.69
PDLIM1-201ENST00000329399 A0A1W2PRG0 241 aa19.38■□□□□ 0.69
PDLIM1-201ENST00000329399 ECM2O94769 699 aaPredicted RBP19.38■□□□□ 0.69
PDLIM1-201ENST00000329399 HSPD1P10809 573 aaKnown RBP19.38■□□□□ 0.69
PDLIM1-201ENST00000329399 SH3D19Q5HYK7 790 aa19.38■□□□□ 0.69
PDLIM1-201ENST00000329399 FASTKD5Q7L8L6 764 aaKnown RBP19.38■□□□□ 0.69
PDLIM1-201ENST00000329399 CD99L2Q8TCZ2 262 aa19.38■□□□□ 0.69
PDLIM1-201ENST00000329399 EMILIN3Q9NT22 766 aa19.38■□□□□ 0.69
PDLIM1-201ENST00000329399 CHMP5Q9NZZ3 219 aa19.38■□□□□ 0.69
PDLIM1-201ENST00000329399 ZMYM6O95789 1325 aa19.37■□□□□ 0.69
PDLIM1-201ENST00000329399 CTGFP29279 349 aa19.37■□□□□ 0.69
PDLIM1-201ENST00000329399 C17orf99Q6UX52 265 aa19.37■□□□□ 0.69
PDLIM1-201ENST00000329399 RUFY3Q7L099 469 aa19.37■□□□□ 0.69
PDLIM1-201ENST00000329399 RASEFQ8IZ41 740 aa19.37■□□□□ 0.69
PDLIM1-201ENST00000329399 INTS4Q96HW7 963 aaKnown RBP19.37■□□□□ 0.69
PDLIM1-201ENST00000329399 ZSCAN31Q96LW9 406 aaPredicted RBP19.37■□□□□ 0.69
PDLIM1-201ENST00000329399 GNL3Q9BVP2 549 aaKnown RBP eCLIP19.37■□□□□ 0.69
PDLIM1-201ENST00000329399 ARHGAP39Q9C0H5 1083 aa19.37■□□□□ 0.69
PDLIM1-201ENST00000329399 ZCCHC17Q9NP64 241 aaKnown RBP19.37■□□□□ 0.69
PDLIM1-201ENST00000329399 AGTPBP1Q9UPW5 1226 aa19.37■□□□□ 0.69
PDLIM1-201ENST00000329399 USP17L10C9JJH3 530 aa19.36■□□□□ 0.69
PDLIM1-201ENST00000329399 MPHOSPH10O00566 681 aaKnown RBP19.36■□□□□ 0.69
PDLIM1-201ENST00000329399 PEX10O60683 326 aa19.36■□□□□ 0.69
PDLIM1-201ENST00000329399 TDO2P48775 406 aa19.36■□□□□ 0.69
PDLIM1-201ENST00000329399 SP3Q02447 781 aa19.36■□□□□ 0.69
PDLIM1-201ENST00000329399 ALX1Q15699 326 aa19.36■□□□□ 0.69
PDLIM1-201ENST00000329399 ZYXQ15942 572 aaKnown RBP19.36■□□□□ 0.69
PDLIM1-201ENST00000329399 KIAA1755Q5JYT7 1200 aa19.36■□□□□ 0.69
PDLIM1-201ENST00000329399 POTEEQ6S8J3 1075 aa19.36■□□□□ 0.69
PDLIM1-201ENST00000329399 GINM1Q9NU53 330 aa19.36■□□□□ 0.69
PDLIM1-201ENST00000329399 ARPP21Q9UBL0 812 aaPredicted RBP19.36■□□□□ 0.69
PDLIM1-201ENST00000329399 SWAP70Q9UH65 585 aa19.36■□□□□ 0.69
PDLIM1-201ENST00000329399 PRDM1O75626 825 aa19.35■□□□□ 0.69
PDLIM1-201ENST00000329399 CASTP20810 708 aaKnown RBP19.35■□□□□ 0.69
PDLIM1-201ENST00000329399 RASA1P20936 1047 aa19.35■□□□□ 0.69
PDLIM1-201ENST00000329399 BLOC1S2Q6QNY1 142 aa19.35■□□□□ 0.69
PDLIM1-201ENST00000329399 JAKMIP1Q96N16 626 aaKnown RBP19.35■□□□□ 0.69
PDLIM1-201ENST00000329399 TTC14Q96N46 770 aa19.35■□□□□ 0.69
PDLIM1-201ENST00000329399 AS3MTQ9HBK9 375 aa19.35■□□□□ 0.69
PDLIM1-201ENST00000329399 CD2BP2O95400 341 aaKnown RBP19.35■□□□□ 0.69
PDLIM1-201ENST00000329399 CTU1Q7Z7A3 348 aaKnown RBP19.35■□□□□ 0.69
PDLIM1-201ENST00000329399 PROCA1Q8NCQ7 364 aaPredicted RBP19.35■□□□□ 0.69
PDLIM1-201ENST00000329399 CABP5Q9NP86 173 aa19.35■□□□□ 0.69
PDLIM1-201ENST00000329399 SH2B1Q9NRF2 756 aaPredicted RBP19.35■□□□□ 0.69
PDLIM1-201ENST00000329399 LIMCH1Q9UPQ0 1083 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms