RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 CNTNAP5Q8WYK1 1306 aa23.02■■□□□ 1.28
VPS53-201ENST00000291074 SRBD1Q8N5C6 995 aaKnown RBP23.02■■□□□ 1.28
VPS53-201ENST00000291074 OSBPL5Q9H0X9 879 aaPredicted RBP23.02■■□□□ 1.28
VPS53-201ENST00000291074 SRPRBQ9Y5M8 271 aaKnown RBP23.02■■□□□ 1.28
VPS53-201ENST00000291074 EP400Q96L91 3159 aa23.02■■□□□ 1.28
VPS53-201ENST00000291074 XBP1P17861 261 aa23.01■■□□□ 1.27
VPS53-201ENST00000291074 MYL5Q02045 173 aa23.01■■□□□ 1.27
VPS53-201ENST00000291074 GRIK5Q16478 980 aa23.01■■□□□ 1.27
VPS53-201ENST00000291074 MCM9Q9NXL9 1143 aa23.01■■□□□ 1.27
VPS53-201ENST00000291074 DDAH1O94760 285 aa23.01■■□□□ 1.27
VPS53-201ENST00000291074 DPF2Q92785 391 aa23.01■■□□□ 1.27
VPS53-201ENST00000291074 ARPP21Q9UBL0 812 aaPredicted RBP23.01■■□□□ 1.27
VPS53-201ENST00000291074 POSTNQ15063 836 aa23■■□□□ 1.27
VPS53-201ENST00000291074 ZNF827Q17R98 1081 aa23■■□□□ 1.27
VPS53-201ENST00000291074 FAM196AQ6ZSG2 479 aa23■■□□□ 1.27
VPS53-201ENST00000291074 TRIM75PA6NK02 468 aa23■■□□□ 1.27
VPS53-201ENST00000291074 CALM1P0DP23 149 aa23■■□□□ 1.27
VPS53-201ENST00000291074 CALM2P0DP24 149 aa23■■□□□ 1.27
VPS53-201ENST00000291074 CALM3P0DP25 149 aa23■■□□□ 1.27
VPS53-201ENST00000291074 VEGFAP15692 232 aaPredicted RBP23■■□□□ 1.27
VPS53-201ENST00000291074 NPY5RQ15761 445 aa23■■□□□ 1.27
VPS53-201ENST00000291074 ARMCX5Q6P1M9 558 aa23■■□□□ 1.27
VPS53-201ENST00000291074 MAN1B1Q9UKM7 699 aa23■■□□□ 1.27
VPS53-201ENST00000291074 CEP131Q9UPN4 1083 aa23■■□□□ 1.27
VPS53-201ENST00000291074 TSPY2A6NKD2 308 aa22.99■■□□□ 1.27
VPS53-201ENST00000291074 GSDMDP57764 484 aa22.99■■□□□ 1.27
VPS53-201ENST00000291074 DIXDC1Q155Q3 683 aa22.99■■□□□ 1.27
VPS53-201ENST00000291074 PTPN21Q16825 1174 aa22.99■■□□□ 1.27
VPS53-201ENST00000291074 TRAPPC3LQ5T215 181 aa22.99■■□□□ 1.27
VPS53-201ENST00000291074 OLFM4Q6UX06 510 aa22.99■■□□□ 1.27
VPS53-201ENST00000291074 ZNF710Q8N1W2 664 aa22.99■■□□□ 1.27
VPS53-201ENST00000291074 PDCL3Q9H2J4 239 aa22.99■■□□□ 1.27
VPS53-201ENST00000291074 TRMT1Q9NXH9 659 aaKnown RBP22.99■■□□□ 1.27
VPS53-201ENST00000291074 CTCFLQ8NI51 663 aaPredicted RBP22.99■■□□□ 1.27
VPS53-201ENST00000291074 IMPACTQ9P2X3 320 aa22.99■■□□□ 1.27
VPS53-201ENST00000291074 HSP90AA4PQ58FG1 418 aa22.98■■□□□ 1.27
VPS53-201ENST00000291074 ZNF579Q8NAF0 562 aaKnown RBP22.98■■□□□ 1.27
VPS53-201ENST00000291074 GRAPQ13588 217 aa22.98■■□□□ 1.27
VPS53-201ENST00000291074 SBK1Q52WX2 424 aa22.98■■□□□ 1.27
VPS53-201ENST00000291074 RCSD1Q6JBY9 416 aa22.98■■□□□ 1.27
VPS53-201ENST00000291074 CNBD1Q8NA66 436 aa22.98■■□□□ 1.27
VPS53-201ENST00000291074 GRAPLQ8TC17 118 aaPredicted RBP22.98■■□□□ 1.27
VPS53-201ENST00000291074 SH3RF3Q8TEJ3 882 aaPredicted RBP22.98■■□□□ 1.27
VPS53-201ENST00000291074 DYNLL2Q96FJ2 89 aa22.98■■□□□ 1.27
VPS53-201ENST00000291074 FANCLQ9NW38 375 aa22.98■■□□□ 1.27
VPS53-201ENST00000291074 A0A087X0B3 334 aa22.97■■□□□ 1.27
VPS53-201ENST00000291074 ADAMTS3O15072 1205 aa22.97■■□□□ 1.27
VPS53-201ENST00000291074 ACTN4O43707 911 aaKnown RBP22.97■■□□□ 1.27
VPS53-201ENST00000291074 EPSTI1Q96J88 318 aa22.97■■□□□ 1.27
VPS53-201ENST00000291074 LDHBP07195 334 aaKnown RBP22.97■■□□□ 1.27
VPS53-201ENST00000291074 TNFRSF25Q93038 417 aa22.97■■□□□ 1.27
VPS53-201ENST00000291074 ARID3AQ99856 593 aa22.97■■□□□ 1.27
VPS53-201ENST00000291074 ZNF174Q15697 407 aa22.96■■□□□ 1.27
VPS53-201ENST00000291074 LRRC4BQ9NT99 713 aa22.96■■□□□ 1.27
VPS53-201ENST00000291074 SERPINC1P01008 464 aa22.96■■□□□ 1.27
VPS53-201ENST00000291074 USP5P45974 858 aa22.96■■□□□ 1.27
VPS53-201ENST00000291074 UBASH3AP57075 661 aa22.96■■□□□ 1.27
VPS53-201ENST00000291074 SPTY2D1Q68D10 685 aaPredicted RBP22.96■■□□□ 1.27
VPS53-201ENST00000291074 ZNF592Q92610 1267 aa22.96■■□□□ 1.27
VPS53-201ENST00000291074 DHX58Q96C10 678 aa22.95■■□□□ 1.27
VPS53-201ENST00000291074 HOOK1Q9UJC3 728 aaKnown RBP22.95■■□□□ 1.27
VPS53-201ENST00000291074 TFAP4Q01664 338 aa22.95■■□□□ 1.26
VPS53-201ENST00000291074 FMR1Q06787 632 aaKnown RBP eCLIP22.95■■□□□ 1.264e-8■■■■■ 46.3
VPS53-201ENST00000291074 SMARCE1Q969G3 411 aa22.95■■□□□ 1.26
VPS53-201ENST00000291074 MKRN1Q9UHC7 482 aaKnown RBP22.95■■□□□ 1.26
VPS53-201ENST00000291074 TMEM232C9JQI7 657 aa22.95■■□□□ 1.26
VPS53-201ENST00000291074 ELOA2Q8IYF1 753 aaPredicted RBP22.95■■□□□ 1.26
VPS53-201ENST00000291074 TRMT44Q8IYL2 757 aaKnown RBP22.95■■□□□ 1.26
VPS53-201ENST00000291074 CCAR2Q8N163 923 aaKnown RBP22.95■■□□□ 1.26
VPS53-201ENST00000291074 IL17RBQ9NRM6 502 aa22.95■■□□□ 1.26
VPS53-201ENST00000291074 SFPQP23246 707 aaKnown RBP eCLIP22.94■■□□□ 1.26
VPS53-201ENST00000291074 CFAP100Q494V2 611 aa22.94■■□□□ 1.26
VPS53-201ENST00000291074 C12orf60Q5U649 245 aa22.94■■□□□ 1.26
VPS53-201ENST00000291074 CCDC150Q8NCX0 1101 aa22.94■■□□□ 1.26
VPS53-201ENST00000291074 BRMS1Q9HCU9 246 aa22.94■■□□□ 1.26
VPS53-201ENST00000291074 SCG2P13521 617 aa22.94■■□□□ 1.26
VPS53-201ENST00000291074 CASP1P29466 404 aa22.94■■□□□ 1.26
VPS53-201ENST00000291074 SARSP49591 514 aaKnown RBP22.94■■□□□ 1.26
VPS53-201ENST00000291074 CEP135Q66GS9 1140 aa22.94■■□□□ 1.26
VPS53-201ENST00000291074 PRR5LQ6MZQ0 368 aa22.94■■□□□ 1.26
VPS53-201ENST00000291074 WDR66Q8TBY9 1149 aa22.94■■□□□ 1.26
VPS53-201ENST00000291074 SYMPKQ92797 1274 aaKnown RBP22.94■■□□□ 1.26
VPS53-201ENST00000291074 XDHP47989 1333 aa22.93■■□□□ 1.26
VPS53-201ENST00000291074 TTC38Q5R3I4 469 aa22.93■■□□□ 1.26
VPS53-201ENST00000291074 NT5DC1Q5TFE4 455 aa22.93■■□□□ 1.26
VPS53-201ENST00000291074 NYAP1Q6ZVC0 841 aa22.93■■□□□ 1.26
VPS53-201ENST00000291074 SLC44A5Q8NCS7 719 aa22.93■■□□□ 1.26
VPS53-201ENST00000291074 NAV1Q8NEY1 1877 aa22.93■■□□□ 1.26
VPS53-201ENST00000291074 LEMD3Q9Y2U8 911 aa22.93■■□□□ 1.26
VPS53-201ENST00000291074 MORC3Q14149 939 aa22.93■■□□□ 1.26
VPS53-201ENST00000291074 PIK3AP1Q6ZUJ8 805 aa22.93■■□□□ 1.26
VPS53-201ENST00000291074 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.92■■□□□ 1.26
VPS53-201ENST00000291074 AFMP43652 599 aa22.92■■□□□ 1.26
VPS53-201ENST00000291074 NLRP5P59047 1200 aa22.92■■□□□ 1.26
VPS53-201ENST00000291074 GPSM2P81274 684 aa22.92■■□□□ 1.26
VPS53-201ENST00000291074 TGFBRAP1Q8WUH2 860 aa22.92■■□□□ 1.26
VPS53-201ENST00000291074 USP17L3A6NCW0 530 aa22.92■■□□□ 1.26
VPS53-201ENST00000291074 USP17L4A6NCW7 530 aa22.92■■□□□ 1.26
VPS53-201ENST00000291074 GOLGA8FQ08AF8 430 aa22.92■■□□□ 1.26
VPS53-201ENST00000291074 GOLGA8DPQ0D2H9 430 aa22.92■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms