RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 CCDC8Q9H0W5 538 aaPredicted RBP11.86□□□□□ -0.51
UPF3B-201ENST00000276201 HELLSQ9NRZ9 838 aa11.86□□□□□ -0.51
UPF3B-201ENST00000276201 POLR3EQ9NVU0 708 aa11.86□□□□□ -0.51
UPF3B-201ENST00000276201 V9GYY5 206 aaPredicted RBP11.86□□□□□ -0.51
UPF3B-201ENST00000276201 PTPDC1A2A3K4 754 aa11.86□□□□□ -0.51
UPF3B-201ENST00000276201 EFCAB8A8MWE9 144 aa11.86□□□□□ -0.51
UPF3B-201ENST00000276201 CYP21A2P08686 494 aa11.86□□□□□ -0.51
UPF3B-201ENST00000276201 HSPA6P17066 643 aa11.86□□□□□ -0.51
UPF3B-201ENST00000276201 IRX5P78411 483 aaPredicted RBP11.86□□□□□ -0.51
UPF3B-201ENST00000276201 CCDC158Q5M9N0 1113 aa11.86□□□□□ -0.51
UPF3B-201ENST00000276201 TLR7Q9NYK1 1049 aaKnown RBP11.86□□□□□ -0.51
UPF3B-201ENST00000276201 GOLGA6L9A6NEM1 432 aa11.85□□□□□ -0.51
UPF3B-201ENST00000276201 CBFA2T2O43439 604 aa11.85□□□□□ -0.51
UPF3B-201ENST00000276201 TADA3O75528 432 aa11.85□□□□□ -0.51
UPF3B-201ENST00000276201 KIF4BQ2VIQ3 1234 aa11.85□□□□□ -0.51
UPF3B-201ENST00000276201 BRAPQ7Z569 592 aa11.85□□□□□ -0.51
UPF3B-201ENST00000276201 TXLNBQ8N3L3 684 aa11.85□□□□□ -0.51
UPF3B-201ENST00000276201 TRMT1Q9NXH9 659 aaKnown RBP11.85□□□□□ -0.51
UPF3B-201ENST00000276201 PCDHA7Q9UN72 937 aa11.85□□□□□ -0.51
UPF3B-201ENST00000276201 COL1A1P02452 1464 aaPredicted RBP11.85□□□□□ -0.51
UPF3B-201ENST00000276201 FAM237AA0A1B0GTK4 181 aa11.85□□□□□ -0.51
UPF3B-201ENST00000276201 A0A1B0GUL7 405 aa11.85□□□□□ -0.51
UPF3B-201ENST00000276201 ITGBL1O95965 494 aaPredicted RBP11.85□□□□□ -0.51
UPF3B-201ENST00000276201 TIMM10P62072 90 aa11.85□□□□□ -0.51
UPF3B-201ENST00000276201 FKBP1AP62942 108 aaKnown RBP11.85□□□□□ -0.51
UPF3B-201ENST00000276201 NCAPHQ15003 741 aa11.85□□□□□ -0.51
UPF3B-201ENST00000276201 ERCC6LQ2NKX8 1250 aa11.85□□□□□ -0.51
UPF3B-201ENST00000276201 LRRFIP1Q32MZ4 808 aaKnown RBP11.85□□□□□ -0.51
UPF3B-201ENST00000276201 RBM26Q5T8P6 1007 aaKnown RBP11.85□□□□□ -0.51
UPF3B-201ENST00000276201 KIAA0825Q8IV33 1275 aa11.85□□□□□ -0.51
UPF3B-201ENST00000276201 ELOA2Q8IYF1 753 aaPredicted RBP11.85□□□□□ -0.51
UPF3B-201ENST00000276201 MSL3Q8N5Y2 521 aaKnown RBP11.85□□□□□ -0.51
UPF3B-201ENST00000276201 XPO4Q9C0E2 1151 aaKnown RBP11.85□□□□□ -0.51
UPF3B-201ENST00000276201 PSD3Q9NYI0 1048 aa11.85□□□□□ -0.51
UPF3B-201ENST00000276201 PGAP2Q9UHJ9 254 aa11.85□□□□□ -0.51
UPF3B-201ENST00000276201 AKAP2Q9Y2D5 859 aa11.85□□□□□ -0.51
UPF3B-201ENST00000276201 DTNBO60941 627 aa11.84□□□□□ -0.51
UPF3B-201ENST00000276201 PHKA1P46020 1223 aa11.84□□□□□ -0.51
UPF3B-201ENST00000276201 TRIM65Q6PJ69 517 aa11.84□□□□□ -0.51
UPF3B-201ENST00000276201 TMCO3Q6UWJ1 677 aa11.84□□□□□ -0.51
UPF3B-201ENST00000276201 SYT10Q6XYQ8 523 aa11.84□□□□□ -0.51
UPF3B-201ENST00000276201 LINC00301Q8NCQ3 95 aa11.84□□□□□ -0.51
UPF3B-201ENST00000276201 BBXQ8WY36 941 aaPredicted RBP11.84□□□□□ -0.51
UPF3B-201ENST00000276201 MYOZ2Q9NPC6 264 aa11.84□□□□□ -0.51
UPF3B-201ENST00000276201 A0A0U1RQG5 324 aaPredicted RBP11.84□□□□□ -0.51
UPF3B-201ENST00000276201 ARHGAP29Q52LW3 1261 aa11.84□□□□□ -0.51
UPF3B-201ENST00000276201 TNNI3KQ59H18 835 aa11.84□□□□□ -0.51
UPF3B-201ENST00000276201 MFSD14BQ5SR56 506 aa11.84□□□□□ -0.51
UPF3B-201ENST00000276201 ZC3H15Q8WU90 426 aaKnown RBP11.84□□□□□ -0.51
UPF3B-201ENST00000276201 FPGT-TNNI3KV9GXZ4 949 aa11.84□□□□□ -0.51
UPF3B-201ENST00000276201 ASTN2O75129 1339 aaPredicted RBP11.83□□□□□ -0.51
UPF3B-201ENST00000276201 PASKQ96RG2 1323 aa11.83□□□□□ -0.51
UPF3B-201ENST00000276201 MYH13Q9UKX3 1938 aa11.83□□□□□ -0.52
UPF3B-201ENST00000276201 ME1P48163 572 aa11.83□□□□□ -0.52
UPF3B-201ENST00000276201 STOX1Q6ZVD7 989 aa11.83□□□□□ -0.52
UPF3B-201ENST00000276201 TMC6Q7Z403 805 aa11.83□□□□□ -0.52
UPF3B-201ENST00000276201 KBTBD3Q8NAB2 608 aa11.83□□□□□ -0.52
UPF3B-201ENST00000276201 UBXN4Q92575 508 aa11.83□□□□□ -0.52
UPF3B-201ENST00000276201 DDX11Q96FC9 970 aa11.83□□□□□ -0.52
UPF3B-201ENST00000276201 XAGE2Q96GT9 111 aa11.83□□□□□ -0.52
UPF3B-201ENST00000276201 GPR108Q9NPR9 543 aa11.83□□□□□ -0.52
UPF3B-201ENST00000276201 IFNKQ9P0W0 207 aa11.83□□□□□ -0.52
UPF3B-201ENST00000276201 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.83□□□□□ -0.52
UPF3B-201ENST00000276201 TUBE1Q9UJT0 475 aa11.83□□□□□ -0.52
UPF3B-201ENST00000276201 ZSCAN12O43309 604 aa11.83□□□□□ -0.52
UPF3B-201ENST00000276201 CMA1P23946 247 aa11.83□□□□□ -0.52
UPF3B-201ENST00000276201 GRIK5Q16478 980 aa11.83□□□□□ -0.52
UPF3B-201ENST00000276201 JAKMIP3Q5VZ66 844 aa11.83□□□□□ -0.52
UPF3B-201ENST00000276201 CCDC102BQ68D86 513 aa11.83□□□□□ -0.52
UPF3B-201ENST00000276201 OGFOD1Q8N543 542 aa11.83□□□□□ -0.52
UPF3B-201ENST00000276201 GPR161Q8N6U8 529 aaKnown RBP11.83□□□□□ -0.52
UPF3B-201ENST00000276201 SDF4Q9BRK5 362 aa11.83□□□□□ -0.52
UPF3B-201ENST00000276201 DBNLQ9UJU6 430 aaKnown RBP11.83□□□□□ -0.52
UPF3B-201ENST00000276201 WDR19Q8NEZ3 1342 aa11.82□□□□□ -0.52
UPF3B-201ENST00000276201 F8W031 263 aaPredicted RBP11.82□□□□□ -0.52
UPF3B-201ENST00000276201 SLC3A2P08195 630 aaKnown RBP11.82□□□□□ -0.52
UPF3B-201ENST00000276201 ZRSR1Q15695 479 aaKnown RBP11.82□□□□□ -0.52
UPF3B-201ENST00000276201 REXO1L1PQ8IX06 675 aa11.82□□□□□ -0.52
UPF3B-201ENST00000276201 NEUROD6Q96NK8 337 aa11.82□□□□□ -0.52
UPF3B-201ENST00000276201 TRAF5O00463 557 aa11.82□□□□□ -0.52
UPF3B-201ENST00000276201 PDIA3P30101 505 aaKnown RBP11.82□□□□□ -0.52
UPF3B-201ENST00000276201 MMP14P50281 582 aa11.82□□□□□ -0.52
UPF3B-201ENST00000276201 APLP1P51693 650 aa11.82□□□□□ -0.52
UPF3B-201ENST00000276201 FANCCQ00597 558 aa11.82□□□□□ -0.52
UPF3B-201ENST00000276201 FMR1Q06787 632 aaKnown RBP eCLIP11.82□□□□□ -0.52
UPF3B-201ENST00000276201 SCARF1Q14162 830 aa11.82□□□□□ -0.52
UPF3B-201ENST00000276201 DPCR1Q3MIW9 517 aa11.82□□□□□ -0.52
UPF3B-201ENST00000276201 GLIS2Q9BZE0 524 aaPredicted RBP11.82□□□□□ -0.52
UPF3B-201ENST00000276201 GNL3LQ9NVN8 582 aaKnown RBP11.82□□□□□ -0.52
UPF3B-201ENST00000276201 GGA3Q9NZ52 723 aa11.82□□□□□ -0.52
UPF3B-201ENST00000276201 HDAC9Q9UKV0 1011 aa11.82□□□□□ -0.52
UPF3B-201ENST00000276201 ZBTB22O15209 634 aa11.81□□□□□ -0.52
UPF3B-201ENST00000276201 SMC2O95347 1197 aa11.81□□□□□ -0.52
UPF3B-201ENST00000276201 NDUFA8P51970 172 aa11.81□□□□□ -0.52
UPF3B-201ENST00000276201 TUBB4BP68371 445 aa11.81□□□□□ -0.52
UPF3B-201ENST00000276201 RASGRF1Q13972 1273 aa11.81□□□□□ -0.52
UPF3B-201ENST00000276201 ZMYM1Q5SVZ6 1142 aa11.81□□□□□ -0.52
UPF3B-201ENST00000276201 IQUBQ8NA54 791 aa11.81□□□□□ -0.52
UPF3B-201ENST00000276201 TBC1D22AQ8WUA7 517 aa11.81□□□□□ -0.52
UPF3B-201ENST00000276201 ZBED3Q96IU2 234 aaPredicted RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms