RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 MAP3K13O43283 966 aa11.78□□□□□ -0.52
VPS41-201ENST00000265745 ELNP15502 786 aa11.78□□□□□ -0.52
VPS41-201ENST00000265745 GJA8P48165 433 aa11.78□□□□□ -0.52
VPS41-201ENST00000265745 UBXN2AP68543 259 aa11.78□□□□□ -0.52
VPS41-201ENST00000265745 IRX3P78415 501 aaPredicted RBP11.78□□□□□ -0.52
VPS41-201ENST00000265745 GABPAQ06546 454 aa11.78□□□□□ -0.52
VPS41-201ENST00000265745 CERKLQ49MI3 558 aaPredicted RBP11.78□□□□□ -0.52
VPS41-201ENST00000265745 NKX2-3Q8TAU0 364 aa11.78□□□□□ -0.52
VPS41-201ENST00000265745 SHISA4Q96DD7 197 aa11.78□□□□□ -0.52
VPS41-201ENST00000265745 HAUS7Q99871 368 aa11.78□□□□□ -0.52
VPS41-201ENST00000265745 CRNKL1Q9BZJ0 848 aaKnown RBP11.78□□□□□ -0.52
VPS41-201ENST00000265745 RNF208Q9H0X6 261 aa11.78□□□□□ -0.52
VPS41-201ENST00000265745 PAG1Q9NWQ8 432 aa11.78□□□□□ -0.52
VPS41-201ENST00000265745 MORF4L1Q9UBU8 362 aa11.78□□□□□ -0.52
VPS41-201ENST00000265745 GJD2Q9UKL4 321 aa11.78□□□□□ -0.52
VPS41-201ENST00000265745 POLR3DP05423 398 aaPredicted RBP11.77□□□□□ -0.53
VPS41-201ENST00000265745 SHMT1P34896 483 aa11.77□□□□□ -0.53
VPS41-201ENST00000265745 FXR2P51116 673 aaKnown RBP eCLIP11.77□□□□□ -0.53
VPS41-201ENST00000265745 USP17L2Q6R6M4 530 aa11.77□□□□□ -0.53
VPS41-201ENST00000265745 LRRCC1Q9C099 1032 aa11.77□□□□□ -0.53
VPS41-201ENST00000265745 UNC93B1Q9H1C4 597 aa11.77□□□□□ -0.53
VPS41-201ENST00000265745 TXNRD2Q9NNW7 524 aa11.77□□□□□ -0.53
VPS41-201ENST00000265745 DCP1AQ9NPI6 582 aaPredicted RBP11.77□□□□□ -0.53
VPS41-201ENST00000265745 MCM9Q9NXL9 1143 aa11.77□□□□□ -0.53
VPS41-201ENST00000265745 RBPJLQ9UBG7 517 aa11.77□□□□□ -0.53
VPS41-201ENST00000265745 AK9Q5TCS8 1911 aa11.77□□□□□ -0.53
VPS41-201ENST00000265745 SMARCA5O60264 1052 aaPredicted RBP11.76□□□□□ -0.53
VPS41-201ENST00000265745 PEX10O60683 326 aa11.76□□□□□ -0.53
VPS41-201ENST00000265745 INHAP05111 366 aa11.76□□□□□ -0.53
VPS41-201ENST00000265745 ADD2P35612 726 aa11.76□□□□□ -0.53
VPS41-201ENST00000265745 HERVK_113P62684 666 aa11.76□□□□□ -0.53
VPS41-201ENST00000265745 RAB3GAP1Q15042 981 aa11.76□□□□□ -0.53
VPS41-201ENST00000265745 E2F4Q16254 413 aa11.76□□□□□ -0.53
VPS41-201ENST00000265745 ABCB5Q2M3G0 1257 aa11.76□□□□□ -0.53
VPS41-201ENST00000265745 SLFNL1Q499Z3 407 aa11.76□□□□□ -0.53
VPS41-201ENST00000265745 POTEEQ6S8J3 1075 aa11.76□□□□□ -0.53
VPS41-201ENST00000265745 UBE2Q1Q7Z7E8 422 aa11.76□□□□□ -0.53
VPS41-201ENST00000265745 LCORLQ8N3X6 602 aa11.76□□□□□ -0.53
VPS41-201ENST00000265745 GPRC5AQ8NFJ5 357 aa11.76□□□□□ -0.53
VPS41-201ENST00000265745 SDR42E1Q8WUS8 393 aa11.76□□□□□ -0.53
VPS41-201ENST00000265745 KIF12Q96FN5 646 aa11.76□□□□□ -0.53
VPS41-201ENST00000265745 C12orf42Q96LP6 360 aa11.76□□□□□ -0.53
VPS41-201ENST00000265745 SGPL1O95470 568 aa11.75□□□□□ -0.53
VPS41-201ENST00000265745 CHGBP05060 677 aa11.75□□□□□ -0.53
VPS41-201ENST00000265745 GUCY1A2P33402 732 aa11.75□□□□□ -0.53
VPS41-201ENST00000265745 EVX2Q03828 476 aa11.75□□□□□ -0.53
VPS41-201ENST00000265745 UBE3CQ15386 1083 aa11.75□□□□□ -0.53
VPS41-201ENST00000265745 Q3C1V9 767 aa11.75□□□□□ -0.53
VPS41-201ENST00000265745 ACER1Q8TDN7 264 aa11.75□□□□□ -0.53
VPS41-201ENST00000265745 U2AF1L4Q8WU68 220 aaKnown RBP11.75□□□□□ -0.53
VPS41-201ENST00000265745 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.75□□□□□ -0.532e-7■■■■□ 19.6
VPS41-201ENST00000265745 KIAA1683Q9H0B3 1180 aa11.75□□□□□ -0.53
VPS41-201ENST00000265745 DCTPP1Q9H773 170 aa11.75□□□□□ -0.53
VPS41-201ENST00000265745 ARMT1Q9H993 441 aa11.75□□□□□ -0.53
VPS41-201ENST00000265745 CABP5Q9NP86 173 aa11.75□□□□□ -0.53
VPS41-201ENST00000265745 DOCK2Q92608 1830 aa11.74□□□□□ -0.53
VPS41-201ENST00000265745 USP17L15C9J2P7 530 aa11.74□□□□□ -0.53
VPS41-201ENST00000265745 USP17L13C9JLJ4 530 aa11.74□□□□□ -0.53
VPS41-201ENST00000265745 USP17L11C9JVI0 530 aa11.74□□□□□ -0.53
VPS41-201ENST00000265745 USP17L18D6R9N7 530 aa11.74□□□□□ -0.53
VPS41-201ENST00000265745 USP17L22D6RA61 530 aa11.74□□□□□ -0.53
VPS41-201ENST00000265745 USP17L17D6RBQ6 530 aa11.74□□□□□ -0.53
VPS41-201ENST00000265745 USP17L19D6RCP7 530 aa11.74□□□□□ -0.53
VPS41-201ENST00000265745 USP17L20D6RJB6 530 aa11.74□□□□□ -0.53
VPS41-201ENST00000265745 PRKAB2O43741 272 aa11.74□□□□□ -0.53
VPS41-201ENST00000265745 CYP2D6P10635 497 aa11.74□□□□□ -0.53
VPS41-201ENST00000265745 USP14P54578 494 aa11.74□□□□□ -0.53
VPS41-201ENST00000265745 USP17L24Q0WX57 530 aa11.74□□□□□ -0.53
VPS41-201ENST00000265745 SEPT2Q15019 361 aa11.74□□□□□ -0.53
VPS41-201ENST00000265745 ZYXQ15942 572 aaKnown RBP11.74□□□□□ -0.53
VPS41-201ENST00000265745 CATSPERGQ6ZRH7 1159 aa11.74□□□□□ -0.53
VPS41-201ENST00000265745 GTF3C2Q8WUA4 911 aaPredicted RBP11.74□□□□□ -0.53
VPS41-201ENST00000265745 GCC1Q96CN9 775 aa11.74□□□□□ -0.53
VPS41-201ENST00000265745 FEZ1Q99689 392 aa11.74□□□□□ -0.53
VPS41-201ENST00000265745 PAK6Q9NQU5 681 aaPredicted RBP11.74□□□□□ -0.53
VPS41-201ENST00000265745 ATP8A2Q9NTI2 1148 aa11.74□□□□□ -0.53
VPS41-201ENST00000265745 ECHDC1Q9NTX5 307 aa11.74□□□□□ -0.53
VPS41-201ENST00000265745 MBD4O95243 580 aa11.73□□□□□ -0.53
VPS41-201ENST00000265745 HMGCRP04035 888 aa11.73□□□□□ -0.53
VPS41-201ENST00000265745 VCAM1P19320 739 aa11.73□□□□□ -0.53
VPS41-201ENST00000265745 MAPK4P31152 587 aa11.73□□□□□ -0.53
VPS41-201ENST00000265745 ERVK-9P63128 1117 aa11.73□□□□□ -0.53
VPS41-201ENST00000265745 ERVK-24P63145 666 aa11.73□□□□□ -0.53
VPS41-201ENST00000265745 DEFB118Q96PH6 123 aa11.73□□□□□ -0.53
VPS41-201ENST00000265745 DOCK1Q14185 1865 aa11.72□□□□□ -0.53
VPS41-201ENST00000265745 ZSWIM8A7E2V4 1837 aa11.72□□□□□ -0.53
VPS41-201ENST00000265745 A0A1W2PRG0 241 aa11.72□□□□□ -0.53
VPS41-201ENST00000265745 USP17L12C9JPN9 530 aa11.72□□□□□ -0.53
VPS41-201ENST00000265745 USP17L21D6R901 530 aa11.72□□□□□ -0.53
VPS41-201ENST00000265745 H0YGN5 161 aa11.72□□□□□ -0.53
VPS41-201ENST00000265745 TFRCP02786 760 aaKnown RBP11.72□□□□□ -0.53
VPS41-201ENST00000265745 XRCC5P13010 732 aaKnown RBP11.72□□□□□ -0.53
VPS41-201ENST00000265745 CAPN2P17655 700 aa11.72□□□□□ -0.53
VPS41-201ENST00000265745 CYP2B6P20813 491 aa11.72□□□□□ -0.53
VPS41-201ENST00000265745 HABP4Q5JVS0 413 aaKnown RBP11.72□□□□□ -0.53
VPS41-201ENST00000265745 ZSCAN25Q6NSZ9 544 aa11.72□□□□□ -0.53
VPS41-201ENST00000265745 SLC44A5Q8NCS7 719 aa11.72□□□□□ -0.53
VPS41-201ENST00000265745 USP6NLQ92738 828 aa11.72□□□□□ -0.53
VPS41-201ENST00000265745 DYNLL2Q96FJ2 89 aa11.72□□□□□ -0.53
VPS41-201ENST00000265745 NUDT12Q9BQG2 462 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms