RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 VWCEQ96DN2 955 aa6.93□□□□□ -1.3
CCDC54-201ENST00000261058 DUSP23Q9BVJ7 150 aa6.93□□□□□ -1.3
CCDC54-201ENST00000261058 KCNF1Q9H3M0 494 aa6.93□□□□□ -1.3
CCDC54-201ENST00000261058 PRDM10Q9NQV6 1147 aa6.93□□□□□ -1.3
CCDC54-201ENST00000261058 SLC12A7Q9Y666 1083 aa6.93□□□□□ -1.3
CCDC54-201ENST00000261058 LTBP3Q9NS15 1303 aa6.92□□□□□ -1.3
CCDC54-201ENST00000261058 POLR2BP30876 1174 aaKnown RBP6.92□□□□□ -1.3
CCDC54-201ENST00000261058 CDK5R2Q13319 367 aa6.92□□□□□ -1.3
CCDC54-201ENST00000261058 NKAPLQ5M9Q1 402 aa6.92□□□□□ -1.3
CCDC54-201ENST00000261058 FAM214BQ7L5A3 538 aa6.92□□□□□ -1.3
CCDC54-201ENST00000261058 ZAR1Q86SH2 424 aa6.92□□□□□ -1.3
CCDC54-201ENST00000261058 KIF2CQ99661 725 aa6.92□□□□□ -1.3
CCDC54-201ENST00000261058 LNPKQ9C0E8 428 aa6.92□□□□□ -1.3
CCDC54-201ENST00000261058 ACTR10Q9NZ32 417 aa6.92□□□□□ -1.3
CCDC54-201ENST00000261058 STOML1Q9UBI4 398 aa6.92□□□□□ -1.3
CCDC54-201ENST00000261058 EOMESO95936 686 aa6.91□□□□□ -1.3
CCDC54-201ENST00000261058 ADMP35318 185 aa6.91□□□□□ -1.3
CCDC54-201ENST00000261058 NFKBIBQ15653 356 aa6.91□□□□□ -1.3
CCDC54-201ENST00000261058 RNF43Q68DV7 783 aa6.91□□□□□ -1.3
CCDC54-201ENST00000261058 LETMD1Q6P1Q0 360 aa6.91□□□□□ -1.3
CCDC54-201ENST00000261058 PHACTR4Q8IZ21 702 aa6.91□□□□□ -1.3
CCDC54-201ENST00000261058 BAHD1Q8TBE0 780 aaPredicted RBP6.91□□□□□ -1.3
CCDC54-201ENST00000261058 CEP131Q9UPN4 1083 aa6.91□□□□□ -1.3
CCDC54-201ENST00000261058 MSRB2Q9Y3D2 182 aa6.91□□□□□ -1.3
CCDC54-201ENST00000261058 OGFOD3Q6PK18 319 aa6.9□□□□□ -1.31
CCDC54-201ENST00000261058 DPH6Q7L8W6 267 aa6.9□□□□□ -1.31
CCDC54-201ENST00000261058 TMEM192Q8IY95 271 aa6.9□□□□□ -1.31
CCDC54-201ENST00000261058 CELF2-AS1Q8N7Q2 184 aa6.9□□□□□ -1.31
CCDC54-201ENST00000261058 RIN3Q8TB24 985 aa6.9□□□□□ -1.31
CCDC54-201ENST00000261058 MKL1Q969V6 931 aa6.9□□□□□ -1.31
CCDC54-201ENST00000261058 MIPEPQ99797 713 aa6.9□□□□□ -1.31
CCDC54-201ENST00000261058 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP6.9□□□□□ -1.31
CCDC54-201ENST00000261058 PHAXQ9H814 394 aaKnown RBP6.9□□□□□ -1.31
CCDC54-201ENST00000261058 LGR6Q9HBX8 967 aa6.9□□□□□ -1.31
CCDC54-201ENST00000261058 ZNF214Q9UL59 606 aaPredicted RBP6.9□□□□□ -1.31
CCDC54-201ENST00000261058 DDR2Q16832 855 aa6.89□□□□□ -1.31
CCDC54-201ENST00000261058 RSPO4Q2I0M5 234 aaPredicted RBP6.89□□□□□ -1.31
CCDC54-201ENST00000261058 MICAL1Q8TDZ2 1067 aa6.89□□□□□ -1.31
CCDC54-201ENST00000261058 XAGE3Q8WTP9 111 aa6.89□□□□□ -1.31
CCDC54-201ENST00000261058 SIRPGQ9P1W8 387 aa6.89□□□□□ -1.31
CCDC54-201ENST00000261058 SUCOQ9UBS9 1254 aaKnown RBP6.89□□□□□ -1.31
CCDC54-201ENST00000261058 LEFTY1O75610 366 aa6.88□□□□□ -1.31
CCDC54-201ENST00000261058 PMS1P54277 932 aaKnown RBP6.88□□□□□ -1.31
CCDC54-201ENST00000261058 NFIAQ12857 509 aa6.88□□□□□ -1.31
CCDC54-201ENST00000261058 C22orf34Q6ZV56 151 aa6.88□□□□□ -1.31
CCDC54-201ENST00000261058 LRP10Q7Z4F1 713 aa6.88□□□□□ -1.31
CCDC54-201ENST00000261058 SHISA5Q8N114 240 aa6.88□□□□□ -1.31
CCDC54-201ENST00000261058 TOP6BLQ8N6T0 577 aa6.88□□□□□ -1.31
CCDC54-201ENST00000261058 KLHL6Q8WZ60 621 aa6.88□□□□□ -1.31
CCDC54-201ENST00000261058 DHRS1Q96LJ7 313 aa6.88□□□□□ -1.31
CCDC54-201ENST00000261058 SLC6A18Q96N87 628 aa6.88□□□□□ -1.31
CCDC54-201ENST00000261058 OSBPL2Q9H1P3 480 aa6.88□□□□□ -1.31
CCDC54-201ENST00000261058 FAM87AP0C7U9 286 aa6.87□□□□□ -1.31
CCDC54-201ENST00000261058 GBP1P32455 592 aa6.87□□□□□ -1.31
CCDC54-201ENST00000261058 ETV3P41162 512 aa6.87□□□□□ -1.31
CCDC54-201ENST00000261058 DOC2BQ14184 412 aa6.87□□□□□ -1.31
CCDC54-201ENST00000261058 PPP2R5EQ16537 467 aa6.87□□□□□ -1.31
CCDC54-201ENST00000261058 FXNQ16595 210 aa6.87□□□□□ -1.31
CCDC54-201ENST00000261058 ZNF746Q6NUN9 644 aaPredicted RBP6.87□□□□□ -1.31
CCDC54-201ENST00000261058 SLC51AQ86UW1 340 aa6.87□□□□□ -1.31
CCDC54-201ENST00000261058 PPFIBP1Q86W92 1011 aa6.87□□□□□ -1.31
CCDC54-201ENST00000261058 GIMAP7Q8NHV1 300 aa6.87□□□□□ -1.31
CCDC54-201ENST00000261058 COX4I2Q96KJ9 171 aa6.87□□□□□ -1.31
CCDC54-201ENST00000261058 FBXL18Q96ME1 805 aa6.87□□□□□ -1.31
CCDC54-201ENST00000261058 TBC1D32Q96NH3 1257 aa6.87□□□□□ -1.31
CCDC54-201ENST00000261058 DBNDD2Q9BQY9 259 aa6.87□□□□□ -1.31
CCDC54-201ENST00000261058 CNTNAP4Q9C0A0 1308 aa6.87□□□□□ -1.31
CCDC54-201ENST00000261058 IGF2BP3O00425 579 aaKnown RBP eCLIP6.86□□□□□ -1.31
CCDC54-201ENST00000261058 GSC2O15499 205 aa6.86□□□□□ -1.31
CCDC54-201ENST00000261058 F13BP05160 661 aa6.86□□□□□ -1.31
CCDC54-201ENST00000261058 RASA3Q14644 834 aa6.86□□□□□ -1.31
CCDC54-201ENST00000261058 CPSF6Q16630 551 aaKnown RBP eCLIP6.86□□□□□ -1.31
CCDC54-201ENST00000261058 CCDC144BQ3MJ40 725 aa6.86□□□□□ -1.31
CCDC54-201ENST00000261058 NBPF12Q5TAG4 269 aaPredicted RBP6.86□□□□□ -1.31
CCDC54-201ENST00000261058 CDH24Q86UP0 819 aa6.86□□□□□ -1.31
CCDC54-201ENST00000261058 PMFBP1Q8TBY8 1022 aa6.86□□□□□ -1.31
CCDC54-201ENST00000261058 RNF141Q8WVD5 230 aa6.86□□□□□ -1.31
CCDC54-201ENST00000261058 SMARCC1Q92922 1105 aaPredicted RBP6.86□□□□□ -1.31
CCDC54-201ENST00000261058 HEXIM2Q96MH2 286 aaKnown RBP6.86□□□□□ -1.31
CCDC54-201ENST00000261058 KREMEN1Q96MU8 473 aa6.86□□□□□ -1.31
CCDC54-201ENST00000261058 ASPNQ9BXN1 380 aa6.86□□□□□ -1.31
CCDC54-201ENST00000261058 KRTAP4-8Q9BYQ9 185 aa6.86□□□□□ -1.31
CCDC54-201ENST00000261058 TRIM55Q9BYV6 548 aa6.86□□□□□ -1.31
CCDC54-201ENST00000261058 MAPK8IP1Q9UQF2 711 aa6.86□□□□□ -1.31
CCDC54-201ENST00000261058 R3HCC1Q9Y3T6 440 aaKnown RBP6.86□□□□□ -1.31
CCDC54-201ENST00000261058 CLEC3AO75596 197 aa6.85□□□□□ -1.31
CCDC54-201ENST00000261058 FSTP19883 344 aa6.85□□□□□ -1.31
CCDC54-201ENST00000261058 CYP27A1Q02318 531 aa6.85□□□□□ -1.31
CCDC54-201ENST00000261058 NCAPHQ15003 741 aa6.85□□□□□ -1.31
CCDC54-201ENST00000261058 BBS9Q3SYG4 887 aa6.85□□□□□ -1.31
CCDC54-201ENST00000261058 MRM1Q6IN84 353 aaKnown RBP6.85□□□□□ -1.31
CCDC54-201ENST00000261058 ZNF765Q7L2R6 523 aa6.85□□□□□ -1.31
CCDC54-201ENST00000261058 MFSD14AQ96MC6 490 aa6.85□□□□□ -1.31
CCDC54-201ENST00000261058 CCDC113Q9H0I3 377 aa6.85□□□□□ -1.31
CCDC54-201ENST00000261058 FAM170BA6NMN3 283 aa6.84□□□□□ -1.31
CCDC54-201ENST00000261058 C9IYK1 514 aa6.84□□□□□ -1.31
CCDC54-201ENST00000261058 DYRK3O43781 588 aa6.84□□□□□ -1.31
CCDC54-201ENST00000261058 GJB6O95452 261 aa6.84□□□□□ -1.31
CCDC54-201ENST00000261058 IGLV1-40P01703 118 aa6.84□□□□□ -1.31
CCDC54-201ENST00000261058 ZNF865P0CJ78 1059 aaPredicted RBP6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms