RNA–Protein interactions for RNA: ENST00000233146.6

MSH2-201, Transcript of mutS homolog 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSH2, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-201ENST00000233146 RUFY1Q96T51 708 aa14.59□□□□□ -0.07
MSH2-201ENST00000233146 HDAC6Q9UBN7 1215 aa14.59□□□□□ -0.07
MSH2-201ENST00000233146 XRN1Q8IZH2 1706 aaKnown RBP14.59□□□□□ -0.07
MSH2-201ENST00000233146 A0A1B0GTH6 734 aa14.59□□□□□ -0.07
MSH2-201ENST00000233146 PTPDC1A2A3K4 754 aa14.59□□□□□ -0.07
MSH2-201ENST00000233146 ATP4AP20648 1035 aa14.59□□□□□ -0.07
MSH2-201ENST00000233146 CDC27P30260 824 aa14.59□□□□□ -0.07
MSH2-201ENST00000233146 G3BP1Q13283 466 aaKnown RBP eCLIP14.59□□□□□ -0.073e-6■■■□□ 17.2
MSH2-201ENST00000233146 PAPD7Q5XG87 772 aaKnown RBP14.59□□□□□ -0.07
MSH2-201ENST00000233146 KCTD16Q68DU8 428 aa14.59□□□□□ -0.07
MSH2-201ENST00000233146 P3H4Q92791 437 aa14.59□□□□□ -0.07
MSH2-201ENST00000233146 CNKSR1Q969H4 720 aa14.59□□□□□ -0.07
MSH2-201ENST00000233146 SAR1BQ9Y6B6 198 aa14.59□□□□□ -0.07
MSH2-201ENST00000233146 ADGRB3O60242 1522 aa14.58□□□□□ -0.07
MSH2-201ENST00000233146 E7EVH7 732 aa14.58□□□□□ -0.07
MSH2-201ENST00000233146 CD151P48509 253 aa14.58□□□□□ -0.07
MSH2-201ENST00000233146 PNOCQ13519 176 aa14.58□□□□□ -0.07
MSH2-201ENST00000233146 PPP1R42Q7Z4L9 355 aa14.58□□□□□ -0.07
MSH2-201ENST00000233146 PPFIBP1Q86W92 1011 aa14.58□□□□□ -0.07
MSH2-201ENST00000233146 RUBCNQ92622 972 aa14.58□□□□□ -0.07
MSH2-201ENST00000233146 RBM41Q96IZ5 413 aaKnown RBP14.58□□□□□ -0.07
MSH2-201ENST00000233146 GORASP1Q9BQQ3 440 aa14.58□□□□□ -0.07
MSH2-201ENST00000233146 USP44Q9H0E7 712 aa14.58□□□□□ -0.07
MSH2-201ENST00000233146 MAP2P11137 1827 aaKnown RBP14.58□□□□□ -0.08
MSH2-201ENST00000233146 ATP7BP35670 1465 aa14.58□□□□□ -0.08
MSH2-201ENST00000233146 MFAP3LO75121 409 aa14.58□□□□□ -0.08
MSH2-201ENST00000233146 GHRP10912 638 aa14.58□□□□□ -0.08
MSH2-201ENST00000233146 BMP6P22004 513 aa14.58□□□□□ -0.08
MSH2-201ENST00000233146 OSCARQ8IYS5 282 aa14.58□□□□□ -0.08
MSH2-201ENST00000233146 POLD4Q9HCU8 107 aa14.58□□□□□ -0.08
MSH2-201ENST00000233146 NFE2L3Q9Y4A8 694 aa14.58□□□□□ -0.08
MSH2-201ENST00000233146 NR1D1P20393 614 aa14.58□□□□□ -0.08
MSH2-201ENST00000233146 GUCY1B3Q02153 619 aa14.58□□□□□ -0.08
MSH2-201ENST00000233146 GNPTABQ3T906 1256 aa14.58□□□□□ -0.08
MSH2-201ENST00000233146 SDCCAG8Q86SQ7 713 aaPredicted RBP14.58□□□□□ -0.08
MSH2-201ENST00000233146 ZIM3Q96PE6 472 aa14.58□□□□□ -0.08
MSH2-201ENST00000233146 NOP53Q9NZM5 478 aaKnown RBP14.58□□□□□ -0.08
MSH2-201ENST00000233146 ZFATQ9P243 1243 aa14.58□□□□□ -0.08
MSH2-201ENST00000233146 SALL1Q9NSC2 1324 aa14.58□□□□□ -0.08
MSH2-201ENST00000233146 JCADQ9P266 1359 aa14.57□□□□□ -0.08
MSH2-201ENST00000233146 OVOS2A0A0G2JMS6 1433 aa14.57□□□□□ -0.08
MSH2-201ENST00000233146 OVOS2A0A0J9YW53 1432 aa14.57□□□□□ -0.08
MSH2-201ENST00000233146 OVOS2Q6IE36 1432 aa14.57□□□□□ -0.08
MSH2-201ENST00000233146 APBA1Q02410 837 aa14.57□□□□□ -0.08
MSH2-201ENST00000233146 KRT32Q14532 448 aa14.57□□□□□ -0.08
MSH2-201ENST00000233146 MSL1Q68DK7 614 aa14.57□□□□□ -0.08
MSH2-201ENST00000233146 PPP4R3AQ6IN85 833 aa14.57□□□□□ -0.08
MSH2-201ENST00000233146 SEC62Q99442 399 aaKnown RBP14.57□□□□□ -0.08
MSH2-201ENST00000233146 GOPCQ9HD26 462 aa14.57□□□□□ -0.08
MSH2-201ENST00000233146 L3MBTL1Q9Y468 752 aa14.57□□□□□ -0.08
MSH2-201ENST00000233146 MROH7-TTC4A0A0A0MT08 1334 aa14.57□□□□□ -0.08
MSH2-201ENST00000233146 ITSN1Q15811 1721 aa14.57□□□□□ -0.08
MSH2-201ENST00000233146 HIP1O00291 1037 aa14.57□□□□□ -0.08
MSH2-201ENST00000233146 KIF3BO15066 747 aa14.57□□□□□ -0.08
MSH2-201ENST00000233146 SRGAP2O75044 1071 aa14.57□□□□□ -0.08
MSH2-201ENST00000233146 HMGB1P09429 215 aaKnown RBP14.57□□□□□ -0.08
MSH2-201ENST00000233146 SAFB2Q14151 953 aaKnown RBP eCLIP14.57□□□□□ -0.08
MSH2-201ENST00000233146 ENC1O14682 589 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 PPIP5K2O43314 1243 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 KIF4AO95239 1232 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 ATP1A1P05023 1023 aaKnown RBP14.56□□□□□ -0.08
MSH2-201ENST00000233146 PBX1P40424 430 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 ABL2P42684 1182 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 SYKP43405 635 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 EMBQ6PCB8 327 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 MYLK4Q86YV6 388 aaPredicted RBP14.56□□□□□ -0.08
MSH2-201ENST00000233146 FOXP4Q8IVH2 680 aaPredicted RBP14.56□□□□□ -0.08
MSH2-201ENST00000233146 ENOX1Q8TC92 643 aaKnown RBP14.56□□□□□ -0.08
MSH2-201ENST00000233146 MKL1Q969V6 931 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 CCDC51Q96ER9 411 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 NEK1Q96PY6 1258 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 HPSEQ9Y251 543 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.56□□□□□ -0.08
MSH2-201ENST00000233146 TEX33O43247 280 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 ALDH1L1O75891 902 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 EIF2S2P20042 333 aaKnown RBP14.56□□□□□ -0.08
MSH2-201ENST00000233146 EPHB4P54760 987 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 BYSLQ13895 437 aaKnown RBP14.56□□□□□ -0.08
MSH2-201ENST00000233146 SETDB1Q15047 1291 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 HIBCHQ6NVY1 386 aaPredicted RBP14.56□□□□□ -0.08
MSH2-201ENST00000233146 TMTC1Q8IUR5 882 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 CPLX3Q8WVH0 158 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 CCT6BQ92526 530 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 CAVIN3Q969G5 261 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 SLX1AQ9BQ83 275 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 ECHDC1Q9NTX5 307 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 LEMD3Q9Y2U8 911 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 FMNL1O95466 1100 aaPredicted RBP14.56□□□□□ -0.08
MSH2-201ENST00000233146 KRT14P02533 472 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 UBTFL1P0CB47 393 aaPredicted RBP14.56□□□□□ -0.08
MSH2-201ENST00000233146 TPP2P29144 1249 aaPredicted RBP14.56□□□□□ -0.08
MSH2-201ENST00000233146 CTCFP49711 727 aaPredicted RBP14.56□□□□□ -0.08
MSH2-201ENST00000233146 FMR1Q06787 632 aaKnown RBP eCLIP14.56□□□□□ -0.086e-7■■■□□ 16.5
MSH2-201ENST00000233146 NUTM2DQ5VT03 806 aaPredicted RBP14.56□□□□□ -0.08
MSH2-201ENST00000233146 NUTM2AQ8IVF1 878 aaPredicted RBP14.56□□□□□ -0.08
MSH2-201ENST00000233146 HVCN1Q96D96 273 aa14.56□□□□□ -0.08
MSH2-201ENST00000233146 N4BP2Q86UW6 1770 aaPredicted RBP14.55□□□□□ -0.08
MSH2-201ENST00000233146 SMIM24O75264 130 aa14.55□□□□□ -0.08
MSH2-201ENST00000233146 ERVK-24P63145 666 aa14.55□□□□□ -0.08
MSH2-201ENST00000233146 C1orf131Q8NDD1 294 aaKnown RBP14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms