RNA–Protein interactions for RNA: YLR055C

SPT8, Transcript of Subunit of the SAGA transcriptional regulatory complex, yeastyeast

Gene SPT8, Length 1,809 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SPT8YLR055C YEL023CP39992 682 aa11.23□□□□□ -0.61
SPT8YLR055C YFL052WP43551 465 aa11.23□□□□□ -0.61
SPT8YLR055C DAN4P47179 1161 aa11.23□□□□□ -0.61
SPT8YLR055C YTP1P53584 459 aa11.23□□□□□ -0.61
SPT8YLR055C HST2P53686 357 aa11.23□□□□□ -0.61
SPT8YLR055C HEH2Q03281 663 aa11.23□□□□□ -0.61
SPT8YLR055C ATG26Q06321 1198 aa11.23□□□□□ -0.61
SPT8YLR055C IOC2Q12072 812 aa11.23□□□□□ -0.61
SPT8YLR055C EMP46Q12396 444 aa11.23□□□□□ -0.61
SPT8YLR055C ATP2P00830 511 aaKnown RBP11.22□□□□□ -0.61
SPT8YLR055C PRT1P06103 763 aaKnown RBP11.22□□□□□ -0.61
SPT8YLR055C MRP4P32902 394 aa11.22□□□□□ -0.61
SPT8YLR055C SIT1P39980 628 aa11.22□□□□□ -0.61
SPT8YLR055C YIL054WP40524 105 aa11.22□□□□□ -0.61
SPT8YLR055C VTC4P47075 721 aa11.22□□□□□ -0.61
SPT8YLR055C YJR054WP47114 497 aa11.22□□□□□ -0.61
SPT8YLR055C PRO2P54885 456 aaKnown RBP11.22□□□□□ -0.61
SPT8YLR055C MCH5Q08777 521 aa11.22□□□□□ -0.61
SPT8YLR055C TMA46Q12000 345 aaKnown RBP11.22□□□□□ -0.61
SPT8YLR055C YRR1Q12172 810 aa11.22□□□□□ -0.61
SPT8YLR055C SEM1O94742 89 aa11.21□□□□□ -0.61
SPT8YLR055C YBL036CP38197 257 aa11.21□□□□□ -0.61
SPT8YLR055C NPT1P39683 429 aaKnown RBP11.21□□□□□ -0.61
SPT8YLR055C TGL3P40308 642 aa11.21□□□□□ -0.61
SPT8YLR055C FAF1P40546 346 aaPredicted RBP11.21□□□□□ -0.61
SPT8YLR055C FMP32P43557 207 aa11.21□□□□□ -0.61
SPT8YLR055C ELP3Q02908 557 aaKnown RBP11.21□□□□□ -0.61
SPT8YLR055C AIM39Q08223 395 aa11.21□□□□□ -0.61
SPT8YLR055C KCS1Q12494 1050 aa11.21□□□□□ -0.61
SPT8YLR055C MRP8P35719 219 aa11.21□□□□□ -0.62
SPT8YLR055C SHE3P38272 425 aaKnown RBP11.21□□□□□ -0.62
SPT8YLR055C MUB1Q03162 620 aa11.21□□□□□ -0.62
SPT8YLR055C MZM1Q03429 123 aaPredicted RBP11.21□□□□□ -0.62
SPT8YLR055C YLL056CQ12177 298 aa11.21□□□□□ -0.62
SPT8YLR055C PUT4P15380 627 aa11.2□□□□□ -0.62
SPT8YLR055C IDI1P15496 288 aa11.2□□□□□ -0.62
SPT8YLR055C AMS1P22855 1083 aa11.2□□□□□ -0.62
SPT8YLR055C URA10P30402 227 aa11.2□□□□□ -0.62
SPT8YLR055C ZIP1P31111 875 aa11.2□□□□□ -0.62
SPT8YLR055C NUF2P33895 451 aa11.2□□□□□ -0.62
SPT8YLR055C SPC42P36094 363 aa11.2□□□□□ -0.62
SPT8YLR055C RRN7P40992 514 aa11.2□□□□□ -0.62
SPT8YLR055C RBL2P48606 106 aaKnown RBP11.2□□□□□ -0.62
SPT8YLR055C YGL036WP53185 909 aaPredicted RBP11.2□□□□□ -0.62
SPT8YLR055C YMR160WQ03823 816 aa11.2□□□□□ -0.62
SPT8YLR055C MRI1Q06489 411 aaKnown RBP11.2□□□□□ -0.62
SPT8YLR055C MRN1Q08925 612 aaKnown RBP RIP-Chip data11.2□□□□□ -0.62not detected
SPT8YLR055C PAB1P04147 577 aaKnown RBP RIP-Chip data11.19□□□□□ -0.62not detected
SPT8YLR055C TPK1P06244 397 aa11.19□□□□□ -0.62
SPT8YLR055C CNA1P23287 553 aa11.19□□□□□ -0.62
SPT8YLR055C VBA3P25594 458 aa11.19□□□□□ -0.62
SPT8YLR055C GAC1P28006 793 aa11.19□□□□□ -0.62
SPT8YLR055C FRE1P32791 686 aa11.19□□□□□ -0.62
SPT8YLR055C RIB7P33312 244 aa11.19□□□□□ -0.62
SPT8YLR055C VBA5P36172 582 aa11.19□□□□□ -0.62
SPT8YLR055C NOP4P37838 685 aaKnown RBP11.19□□□□□ -0.62
SPT8YLR055C HMT1P38074 348 aa11.19□□□□□ -0.62
SPT8YLR055C GIP1P38229 639 aa11.19□□□□□ -0.62
SPT8YLR055C SHU2P38957 223 aa11.19□□□□□ -0.62
SPT8YLR055C ERP2P39704 215 aa11.19□□□□□ -0.62
SPT8YLR055C SNL1P40548 159 aa11.19□□□□□ -0.62
SPT8YLR055C YFL012WP43580 148 aa11.19□□□□□ -0.62
SPT8YLR055C BNA3P47039 444 aaKnown RBP11.19□□□□□ -0.62
SPT8YLR055C SPC2Q04969 178 aa11.19□□□□□ -0.62
SPT8YLR055C FAR10Q06001 478 aa11.19□□□□□ -0.62
SPT8YLR055C APC9Q12107 265 aa11.19□□□□□ -0.62
SPT8YLR055C RGS2Q99188 309 aa11.19□□□□□ -0.62
SPT8YLR055C SUI3P09064 285 aaKnown RBP11.19□□□□□ -0.62
SPT8YLR055C URK1P27515 501 aa11.19□□□□□ -0.62
SPT8YLR055C HXT3P32466 567 aaKnown RBP11.19□□□□□ -0.62
SPT8YLR055C KDX1P36005 433 aa11.19□□□□□ -0.62
SPT8YLR055C SHE4P51534 789 aa11.19□□□□□ -0.62
SPT8YLR055C YKR005CQ02203 525 aa11.19□□□□□ -0.62
SPT8YLR055C SPO71Q03868 1245 aa11.19□□□□□ -0.62
SPT8YLR055C YML083CQ04526 418 aa11.19□□□□□ -0.62
SPT8YLR055C PEX15Q08215 383 aa11.19□□□□□ -0.62
SPT8YLR055C YVC1Q12324 675 aa11.19□□□□□ -0.62
SPT8YLR055C KGD2P19262 463 aaPredicted RBP11.18□□□□□ -0.62
SPT8YLR055C VAC17P25591 423 aa11.18□□□□□ -0.62
SPT8YLR055C TIF3P34167 436 aaKnown RBP11.18□□□□□ -0.62
SPT8YLR055C SEC31P38968 1273 aaKnown RBP11.18□□□□□ -0.62
SPT8YLR055C DSE1P40077 573 aa11.18□□□□□ -0.62
SPT8YLR055C MND1P53102 219 aa11.18□□□□□ -0.62
SPT8YLR055C SKI8Q02793 397 aaPredicted RBP11.18□□□□□ -0.62
SPT8YLR055C TAF11Q04226 346 aa11.18□□□□□ -0.62
SPT8YLR055C YEL077CQ3E7X8 1277 aa11.18□□□□□ -0.62
SPT8YLR055C TSR4P25040 408 aa11.17□□□□□ -0.62
SPT8YLR055C SAT4P25333 603 aaKnown RBP11.17□□□□□ -0.62
SPT8YLR055C CCR4P31384 837 aaKnown RBP11.17□□□□□ -0.62
SPT8YLR055C VPH1P32563 840 aaKnown RBP11.17□□□□□ -0.62
SPT8YLR055C FES1P38260 290 aa11.17□□□□□ -0.62
SPT8YLR055C MMF1P40185 145 aaKnown RBP11.17□□□□□ -0.62
SPT8YLR055C ASG7P46993 209 aa11.17□□□□□ -0.62
SPT8YLR055C RPA14P50106 137 aa11.17□□□□□ -0.62
SPT8YLR055C YNL108CP53929 270 aa11.17□□□□□ -0.62
SPT8YLR055C NAN1Q02931 896 aaKnown RBP11.17□□□□□ -0.62
SPT8YLR055C ATP1P07251 545 aaKnown RBP11.16□□□□□ -0.62
SPT8YLR055C CLB2P24869 491 aa11.16□□□□□ -0.62
SPT8YLR055C LRE1P25579 583 aaKnown RBP11.16□□□□□ -0.62
SPT8YLR055C PHA2P32452 334 aa11.16□□□□□ -0.62
Retrieved 100 of 5,963 RNA–protein pairs in 31.2 ms