RNA–Protein interactions for RNA: YDR330W

UBX5, Transcript of UBX domain-containing protein that interacts with Cdc48p, yeast

Gene UBX5, Length 1,503 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBX5	YDR330W	BET2	P20133	325 aa		4.21	□□□□□ -1.74
UBX5	YDR330W	GAS1	P22146	559 aa	Known RBP	4.21	□□□□□ -1.74
UBX5	YDR330W	PRP28	P23394	588 aa		4.21	□□□□□ -1.74
UBX5	YDR330W	DCG1	P32460	244 aa		4.21	□□□□□ -1.74
UBX5	YDR330W	BCS1	P32839	456 aa		4.21	□□□□□ -1.74
UBX5	YDR330W	TEF4	P36008	412 aa	Known RBP	4.21	□□□□□ -1.74
UBX5	YDR330W	YBR138C	P38277	524 aa		4.21	□□□□□ -1.74
UBX5	YDR330W	EHT1	P38295	451 aa		4.21	□□□□□ -1.74
UBX5	YDR330W	REV7	P38927	245 aa		4.21	□□□□□ -1.74
UBX5	YDR330W	YEL025C	P39991	1188 aa		4.21	□□□□□ -1.74
UBX5	YDR330W	YER010C	P40011	234 aa		4.21	□□□□□ -1.74
UBX5	YDR330W	HOS4	P40480	1083 aa		4.21	□□□□□ -1.74
UBX5	YDR330W	SPO22	P40511	975 aa		4.21	□□□□□ -1.74
UBX5	YDR330W	HYR1	P40581	163 aa	Known RBP	4.21	□□□□□ -1.74
UBX5	YDR330W	CIR1	P42940	261 aa		4.21	□□□□□ -1.74
UBX5	YDR330W	BNA1	P47096	177 aa		4.21	□□□□□ -1.74
UBX5	YDR330W	SRB7	P47822	140 aa		4.21	□□□□□ -1.74
UBX5	YDR330W	TRS31	Q03337	283 aa		4.21	□□□□□ -1.74
UBX5	YDR330W	CHS5	Q12114	671 aa	Known RBP	4.21	□□□□□ -1.74
UBX5	YDR330W	MED1	Q12321	566 aa		4.21	□□□□□ -1.74
UBX5	YDR330W	TPM1	P17536	199 aa	Known RBP	4.2	□□□□□ -1.74
UBX5	YDR330W	VPS33	P20795	691 aa		4.2	□□□□□ -1.74
UBX5	YDR330W	OPI1	P21957	404 aa		4.2	□□□□□ -1.74
UBX5	YDR330W	TSA1	P34760	196 aa	Known RBP	4.2	□□□□□ -1.74
UBX5	YDR330W	MAC1	P35192	417 aa		4.2	□□□□□ -1.74
UBX5	YDR330W	YBR053C	P38235	358 aa		4.2	□□□□□ -1.74
UBX5	YDR330W	IFA38	P38286	347 aa		4.2	□□□□□ -1.74
UBX5	YDR330W	OSH3	P38713	996 aa	Known RBP	4.2	□□□□□ -1.74
UBX5	YDR330W	YJL193W	P39542	402 aa		4.2	□□□□□ -1.74
UBX5	YDR330W	NDE1	P40215	560 aa		4.2	□□□□□ -1.74
UBX5	YDR330W	TEL2	P53038	688 aa		4.2	□□□□□ -1.74
UBX5	YDR330W	CBK1	P53894	756 aa		4.2	□□□□□ -1.74
UBX5	YDR330W	TIM50	Q02776	476 aa		4.2	□□□□□ -1.74
UBX5	YDR330W	ADY4	Q05955	493 aa		4.2	□□□□□ -1.74
UBX5	YDR330W	CDA2	Q06703	312 aa		4.2	□□□□□ -1.74
UBX5	YDR330W	TRM8	Q12009	286 aa		4.2	□□□□□ -1.74
UBX5	YDR330W	ZRT2	Q12436	422 aa		4.2	□□□□□ -1.74
UBX5	YDR330W	GLT1	Q12680	2145 aa	Known RBP	4.19	□□□□□ -1.74
UBX5	YDR330W	YLR358C	O13565	187 aa		4.19	□□□□□ -1.74
UBX5	YDR330W	RPL19A	P0CX82	189 aa	Known RBP	4.19	□□□□□ -1.74
UBX5	YDR330W	RPL19B	P0CX83	189 aa	Predicted RBP	4.19	□□□□□ -1.74
UBX5	YDR330W	GUK1	P15454	187 aa	Known RBP	4.19	□□□□□ -1.74
UBX5	YDR330W	PRE10	P21242	288 aa	Known RBP RIP-Chip data	4.19	□□□□□ -1.74	not detected
UBX5	YDR330W	YCR015C	P25616	317 aa		4.19	□□□□□ -1.74
UBX5	YDR330W	RPS7A	P26786	190 aa	Known RBP	4.19	□□□□□ -1.74
UBX5	YDR330W	ARP2	P32381	391 aa	Known RBP	4.19	□□□□□ -1.74
UBX5	YDR330W	CNS1	P33313	385 aa		4.19	□□□□□ -1.74
UBX5	YDR330W	TOD6	P34219	525 aa		4.19	□□□□□ -1.74
UBX5	YDR330W	BCD1	P38772	366 aa		4.19	□□□□□ -1.74
UBX5	YDR330W	AXL2	P38928	823 aa		4.19	□□□□□ -1.74
UBX5	YDR330W	TMN3	P40071	706 aa		4.19	□□□□□ -1.74
UBX5	YDR330W	AIM21	P40563	679 aa		4.19	□□□□□ -1.74
UBX5	YDR330W	RFX1	P48743	811 aa		4.19	□□□□□ -1.74
UBX5	YDR330W	MNN10	P50108	393 aa	Known RBP	4.19	□□□□□ -1.74
UBX5	YDR330W	UBC11	P52492	156 aa		4.19	□□□□□ -1.74
UBX5	YDR330W	MCM6	P53091	1017 aa	Known RBP	4.19	□□□□□ -1.74
UBX5	YDR330W	GIR2	Q03768	265 aa	Predicted RBP	4.19	□□□□□ -1.74
UBX5	YDR330W	TFC6	Q06339	672 aa		4.19	□□□□□ -1.74
UBX5	YDR330W	LAS17	Q12446	633 aa		4.19	□□□□□ -1.74
UBX5	YDR330W	LAM4	P38800	1345 aa		4.18	□□□□□ -1.74
UBX5	YDR330W	TPK1	P06244	397 aa		4.18	□□□□□ -1.74
UBX5	YDR330W	PRP6	P19735	899 aa	Predicted RBP	4.18	□□□□□ -1.74
UBX5	YDR330W	PAH1	P32567	862 aa		4.18	□□□□□ -1.74
UBX5	YDR330W	HIS7	P33734	552 aa	Known RBP	4.18	□□□□□ -1.74
UBX5	YDR330W	DHR2	P36009	735 aa	Predicted RBP	4.18	□□□□□ -1.74
UBX5	YDR330W	SET3	P36124	751 aa		4.18	□□□□□ -1.74
UBX5	YDR330W	NOP16	P40007	231 aa	Known RBP	4.18	□□□□□ -1.74
UBX5	YDR330W	LRO1	P40345	661 aa		4.18	□□□□□ -1.74
UBX5	YDR330W	BST1	P43571	1029 aa		4.18	□□□□□ -1.74
UBX5	YDR330W	YGR054W	P53235	642 aa	Known RBP	4.18	□□□□□ -1.74
UBX5	YDR330W	YPL108W	Q02872	168 aa	Predicted RBP	4.18	□□□□□ -1.74
UBX5	YDR330W	BUG1	Q12191	341 aa		4.18	□□□□□ -1.74
UBX5	YDR330W	YKL033W-A	Q86ZR7	236 aa		4.18	□□□□□ -1.74
UBX5	YDR330W	POM152	P39685	1337 aa		4.18	□□□□□ -1.74
UBX5	YDR330W	CDC31	P06704	161 aa	Known RBP	4.17	□□□□□ -1.74
UBX5	YDR330W	FUM1	P08417	488 aa	Known RBP	4.17	□□□□□ -1.74
UBX5	YDR330W	SAN1	P22470	610 aa		4.17	□□□□□ -1.74
UBX5	YDR330W	CBF2	P32504	956 aa		4.17	□□□□□ -1.74
UBX5	YDR330W	ELM1	P32801	640 aa		4.17	□□□□□ -1.74
UBX5	YDR330W	PRX1	P34227	261 aa	Known RBP	4.17	□□□□□ -1.74
UBX5	YDR330W	MUD2	P36084	527 aa	Known RBP	4.17	□□□□□ -1.74
UBX5	YDR330W	STB5	P38699	743 aa		4.17	□□□□□ -1.74
UBX5	YDR330W	RIC1	P40395	1056 aa		4.17	□□□□□ -1.74
UBX5	YDR330W	RSM25	P40496	264 aa		4.17	□□□□□ -1.74
UBX5	YDR330W	IDS2	P46958	469 aa		4.17	□□□□□ -1.74
UBX5	YDR330W	MPS3	P47069	682 aa		4.17	□□□□□ -1.74
UBX5	YDR330W	PAN2	P53010	1115 aa	Predicted RBP	4.17	□□□□□ -1.74
UBX5	YDR330W	RRT6	P53117	311 aa	Predicted RBP	4.17	□□□□□ -1.74
UBX5	YDR330W	PIL1	P53252	339 aa	Known RBP	4.17	□□□□□ -1.74
UBX5	YDR330W	ARR3	Q06598	404 aa		4.17	□□□□□ -1.74
UBX5	YDR330W	DIB1	Q06819	143 aa	Predicted RBP	4.17	□□□□□ -1.74
UBX5	YDR330W	AIM6	Q07716	390 aa		4.17	□□□□□ -1.74
UBX5	YDR330W	PSK2	Q08217	1101 aa		4.17	□□□□□ -1.74
UBX5	YDR330W	IRC13	Q08630	104 aa		4.17	□□□□□ -1.74
UBX5	YDR330W	CTI6	Q08923	506 aa		4.17	□□□□□ -1.74
UBX5	YDR330W	PGA3	Q12746	312 aa	Known RBP	4.17	□□□□□ -1.74
UBX5	YDR330W	FAS2	P19097	1887 aa	Known RBP	4.17	□□□□□ -1.74
UBX5	YDR330W	PET122	P10355	254 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	ABF1	P14164	731 aa		4.16	□□□□□ -1.74
UBX5	YDR330W	VPS34	P22543	875 aa		4.16	□□□□□ -1.74

Retrieved 100 of 5,963 RNA–protein pairs in 18.6 ms