RNA–Protein interactions for RNA: YDL126C

CDC48, Transcript of AAA ATPase, yeast

Gene CDC48, Length 2,508 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CDC48	YDL126C	SWI4	P25302	1093 aa	Known RBP	4.7	□□□□□ -1.66
CDC48	YDL126C	SED4	P25365	1065 aa		4.7	□□□□□ -1.66
CDC48	YDL126C	CMK1	P27466	446 aa	Known RBP	4.7	□□□□□ -1.66
CDC48	YDL126C	MET22	P32179	357 aa		4.7	□□□□□ -1.66
CDC48	YDL126C	PUP2	P32379	260 aa		4.7	□□□□□ -1.66
CDC48	YDL126C	NNK1	P36003	928 aa		4.7	□□□□□ -1.66
CDC48	YDL126C	RFT1	P38206	574 aa	Predicted RBP	4.7	□□□□□ -1.66
CDC48	YDL126C	YLF2	P38746	405 aa		4.7	□□□□□ -1.66
CDC48	YDL126C	MET18	P40469	1032 aa		4.7	□□□□□ -1.66
CDC48	YDL126C	ILM1	P47155	203 aa		4.7	□□□□□ -1.66
CDC48	YDL126C	RTC4	P53850	401 aa		4.7	□□□□□ -1.66
CDC48	YDL126C	DOT1	Q04089	582 aa	Known RBP	4.7	□□□□□ -1.66
CDC48	YDL126C	ACK1	Q07622	623 aa	Predicted RBP	4.7	□□□□□ -1.66
CDC48	YDL126C	SPE3	Q12074	293 aa	Known RBP	4.7	□□□□□ -1.66
CDC48	YDL126C	DDP1	Q99321	188 aa	Known RBP	4.7	□□□□□ -1.66
CDC48	YDL126C	PDX1	P16451	410 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	ICL1	P28240	557 aa	Predicted RBP	4.69	□□□□□ -1.66
CDC48	YDL126C	SFA1	P32771	386 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	YKU70	P32807	602 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	CNS1	P33313	385 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	YKR051W	P36142	418 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	PCH2	P38126	564 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	FYV8	P46949	817 aa	Known RBP	4.69	□□□□□ -1.66
CDC48	YDL126C	UBC9	P50623	157 aa	Predicted RBP	4.69	□□□□□ -1.66
CDC48	YDL126C	HFM1	P51979	1187 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	MAL13	P53338	473 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	KIN4	Q01919	800 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	YML119W	Q03208	357 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	PUS7	Q08647	676 aa	Known RBP	4.69	□□□□□ -1.66
CDC48	YDL126C	CIR2	Q08822	631 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	SMC6	Q12749	1114 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	SEM1	O94742	89 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	HOP1	P20050	605 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	MAK31	P23059	88 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	RIT1	P23796	513 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	GPT2	P36148	743 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	CSM2	P40465	213 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	YRB1	P41920	201 aa	Known RBP	4.69	□□□□□ -1.66
CDC48	YDL126C	GCN20	P43535	752 aa	Known RBP	4.69	□□□□□ -1.66
CDC48	YDL126C	FET5	P43561	622 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	AGX1	P43567	385 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	CCT8	P47079	568 aa	Known RBP	4.69	□□□□□ -1.66
CDC48	YDL126C	YPT11	P48559	417 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	ORM1	P53224	222 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	COP1	P53622	1201 aa	Known RBP	4.69	□□□□□ -1.66
CDC48	YDL126C	NSG2	P53898	299 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	SEC5	P89102	971 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	LEE1	Q02799	301 aa	Known RBP	4.69	□□□□□ -1.66
CDC48	YDL126C	ARO80	Q04052	950 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	GAS5	Q08193	484 aa		4.69	□□□□□ -1.66
CDC48	YDL126C	GSC2	P40989	1895 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	FLO11	P08640	1367 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	RPS9B	P05755	195 aa	Known RBP	4.68	□□□□□ -1.66
CDC48	YDL126C	MTF2	P10849	440 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	VMA2	P16140	517 aa	Known RBP	4.68	□□□□□ -1.66
CDC48	YDL126C	FAR1	P21268	830 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	RNR3	P21672	869 aa	Known RBP	4.68	□□□□□ -1.66
CDC48	YDL126C	RPS7A	P26786	190 aa	Known RBP	4.68	□□□□□ -1.66
CDC48	YDL126C	RPC34	P32910	317 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	SEG2	P34250	1132 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	MAE1	P36013	669 aa	Known RBP	4.68	□□□□□ -1.66
CDC48	YDL126C	LHS1	P36016	881 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	ERC1	P38767	581 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	UTP18	P40362	594 aa	Predicted RBP	4.68	□□□□□ -1.66
CDC48	YDL126C	INP52	P50942	1183 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	YNR068C	P53754	272 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	FUS2	Q05670	677 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	YDL073W	Q07454	984 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	GET3	Q12154	354 aa	Known RBP	4.68	□□□□□ -1.66
CDC48	YDL126C	YOL159C-A	Q3E769	90 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	YLR149C	Q99296	730 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	YMR084W	A2P2R3	262 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	PET122	P10355	254 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	SAC7	P17121	654 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	COX11	P19516	300 aa	Known RBP	4.68	□□□□□ -1.66
CDC48	YDL126C	FUN30	P31380	1131 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	YKT6	P36015	200 aa	Known RBP	4.68	□□□□□ -1.66
CDC48	YDL126C	IFA38	P38286	347 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	BEM4	P39011	633 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	YER158C	P40095	573 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	PCL7	P40186	285 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	VMA13	P41807	478 aa	Known RBP	4.68	□□□□□ -1.66
CDC48	YDL126C	BRE2	P43132	505 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	IML2	P47031	731 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	JJJ3	P47138	172 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	HOP2	P53187	214 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	YNR061C	P53747	219 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	YMR155W	Q03795	547 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	ECM11	Q04110	302 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	MYO5	Q04439	1219 aa	Known RBP	4.68	□□□□□ -1.66
CDC48	YDL126C	RRN11	Q04712	507 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	PHO92	Q06390	306 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	LSO2	Q3E772	92 aa	Known RBP	4.68	□□□□□ -1.66
CDC48	YDL126C	YBL111C	Q3E7Y5	667 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	YOR111W	Q99210	232 aa		4.68	□□□□□ -1.66
CDC48	YDL126C	RPS3	P05750	240 aa	Known RBP	4.67	□□□□□ -1.66
CDC48	YDL126C	GPA1	P08539	472 aa		4.67	□□□□□ -1.66
CDC48	YDL126C	SUI3	P09064	285 aa	Known RBP	4.67	□□□□□ -1.66
CDC48	YDL126C	YMR085W	P0CF18	432 aa		4.67	□□□□□ -1.66
CDC48	YDL126C	PRO3	P32263	286 aa	Known RBP	4.67	□□□□□ -1.66

Retrieved 100 of 5,963 RNA–protein pairs in 21 ms