RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 SERTAD1Q9UHV2 236 aa14.63□□□□□ -0.07
LINC00540-203ENST00000631321 NIP7Q9Y221 180 aaKnown RBP eCLIP14.63□□□□□ -0.07
LINC00540-203ENST00000631321 TNKSO95271 1327 aa14.63□□□□□ -0.07
LINC00540-203ENST00000631321 PHLPP2Q6ZVD8 1323 aa14.63□□□□□ -0.07
LINC00540-203ENST00000631321 COL22A1Q8NFW1 1626 aaPredicted RBP14.62□□□□□ -0.07
LINC00540-203ENST00000631321 MAGEB6P1A0A0J9YX57 407 aa14.62□□□□□ -0.07
LINC00540-203ENST00000631321 TMEM232C9JQI7 657 aa14.62□□□□□ -0.07
LINC00540-203ENST00000631321 FGRP09769 529 aa14.62□□□□□ -0.07
LINC00540-203ENST00000631321 PRR29P0C7W0 189 aa14.62□□□□□ -0.07
LINC00540-203ENST00000631321 ETF1P62495 437 aaKnown RBP14.62□□□□□ -0.07
LINC00540-203ENST00000631321 ITPK1Q13572 414 aa14.62□□□□□ -0.07
LINC00540-203ENST00000631321 CT47A1Q5JQC4 288 aaPredicted RBP14.62□□□□□ -0.07
LINC00540-203ENST00000631321 TMEM139Q8IV31 216 aa14.62□□□□□ -0.07
LINC00540-203ENST00000631321 SMARCE1Q969G3 411 aa14.62□□□□□ -0.07
LINC00540-203ENST00000631321 SHISA4Q96DD7 197 aa14.62□□□□□ -0.07
LINC00540-203ENST00000631321 GTPBP4Q9BZE4 634 aaKnown RBP14.62□□□□□ -0.07
LINC00540-203ENST00000631321 PCP11498 1178 aaKnown RBP14.62□□□□□ -0.07
LINC00540-203ENST00000631321 UBE4AQ14139 1066 aa14.62□□□□□ -0.07
LINC00540-203ENST00000631321 PKN1Q16512 942 aa14.62□□□□□ -0.07
LINC00540-203ENST00000631321 NUP133Q8WUM0 1156 aa14.62□□□□□ -0.07
LINC00540-203ENST00000631321 BRIP1Q9BX63 1249 aa14.62□□□□□ -0.07
LINC00540-203ENST00000631321 GNL3LQ9NVN8 582 aaKnown RBP14.62□□□□□ -0.07
LINC00540-203ENST00000631321 AATFQ9NY61 560 aaKnown RBP eCLIP14.62□□□□□ -0.07
LINC00540-203ENST00000631321 COL1A1P02452 1464 aaPredicted RBP14.61□□□□□ -0.07
LINC00540-203ENST00000631321 PRPF3O43395 683 aaKnown RBP14.61□□□□□ -0.07
LINC00540-203ENST00000631321 FMR1Q06787 632 aaKnown RBP eCLIP14.61□□□□□ -0.07
LINC00540-203ENST00000631321 KMT5BQ4FZB7 885 aa14.61□□□□□ -0.07
LINC00540-203ENST00000631321 TRIM65Q6PJ69 517 aa14.61□□□□□ -0.07
LINC00540-203ENST00000631321 REXO1L1PQ8IX06 675 aa14.61□□□□□ -0.07
LINC00540-203ENST00000631321 CMTR1Q8N1G2 835 aaKnown RBP14.61□□□□□ -0.07
LINC00540-203ENST00000631321 CCDC82Q8N4S0 544 aa14.61□□□□□ -0.07
LINC00540-203ENST00000631321 SDR42E1Q8WUS8 393 aa14.61□□□□□ -0.07
LINC00540-203ENST00000631321 PHF20Q9BVI0 1012 aa14.61□□□□□ -0.07
LINC00540-203ENST00000631321 PRDM10Q9NQV6 1147 aa14.61□□□□□ -0.07
LINC00540-203ENST00000631321 THRAP3Q9Y2W1 955 aaKnown RBP14.61□□□□□ -0.07
LINC00540-203ENST00000631321 ARHGAP6O43182 974 aa14.61□□□□□ -0.07
LINC00540-203ENST00000631321 XBP1P17861 261 aa14.61□□□□□ -0.07
LINC00540-203ENST00000631321 ENAHQ8N8S7 591 aaPredicted RBP14.61□□□□□ -0.07
LINC00540-203ENST00000631321 ZSCAN10Q96SZ4 725 aaPredicted RBP14.61□□□□□ -0.07
LINC00540-203ENST00000631321 CSRNP2Q9H175 543 aa14.61□□□□□ -0.07
LINC00540-203ENST00000631321 CABP5Q9NP86 173 aa14.61□□□□□ -0.07
LINC00540-203ENST00000631321 TRIM75PA6NK02 468 aa14.6□□□□□ -0.07
LINC00540-203ENST00000631321 ERCC5P28715 1186 aaPredicted RBP14.6□□□□□ -0.07
LINC00540-203ENST00000631321 SF3B3Q15393 1217 aaKnown RBP14.6□□□□□ -0.07
LINC00540-203ENST00000631321 ELF2Q15723 593 aa14.6□□□□□ -0.07
LINC00540-203ENST00000631321 RBM28Q9NW13 759 aaKnown RBP14.6□□□□□ -0.07
LINC00540-203ENST00000631321 NFE2L3Q9Y4A8 694 aa14.6□□□□□ -0.07
LINC00540-203ENST00000631321 COL4A1P02462 1669 aa14.6□□□□□ -0.07
LINC00540-203ENST00000631321 MINDY4BA8MYZ0 360 aa14.6□□□□□ -0.07
LINC00540-203ENST00000631321 BMP15O95972 392 aa14.6□□□□□ -0.07
LINC00540-203ENST00000631321 PLCD1P51178 756 aa14.6□□□□□ -0.07
LINC00540-203ENST00000631321 CLEC4GQ6UXB4 293 aa14.6□□□□□ -0.07
LINC00540-203ENST00000631321 SH3RF1Q7Z6J0 888 aa14.6□□□□□ -0.07
LINC00540-203ENST00000631321 MED15Q96RN5 788 aa14.6□□□□□ -0.07
LINC00540-203ENST00000631321 BSDC1Q9NW68 430 aaPredicted RBP14.6□□□□□ -0.07
LINC00540-203ENST00000631321 FAM53CQ9NYF3 392 aa14.6□□□□□ -0.07
LINC00540-203ENST00000631321 RAI14Q9P0K7 980 aa14.6□□□□□ -0.07
LINC00540-203ENST00000631321 ZNF652Q9Y2D9 606 aa14.6□□□□□ -0.07
LINC00540-203ENST00000631321 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.6□□□□□ -0.07
LINC00540-203ENST00000631321 DUOX1Q9NRD9 1551 aa14.59□□□□□ -0.07
LINC00540-203ENST00000631321 SPATA31A1Q5TZJ5 1347 aa14.59□□□□□ -0.07
LINC00540-203ENST00000631321 CACNA1SQ13698 1873 aa14.59□□□□□ -0.07
LINC00540-203ENST00000631321 ZSCAN12O43309 604 aa14.59□□□□□ -0.07
LINC00540-203ENST00000631321 KRT2P35908 639 aa14.59□□□□□ -0.07
LINC00540-203ENST00000631321 AKAP17AQ02040 695 aaKnown RBP14.59□□□□□ -0.07
LINC00540-203ENST00000631321 DDB1Q16531 1140 aa14.59□□□□□ -0.07
LINC00540-203ENST00000631321 FBXO38Q6PIJ6 1188 aa14.59□□□□□ -0.07
LINC00540-203ENST00000631321 NUTM2AQ8IVF1 878 aaPredicted RBP14.59□□□□□ -0.07
LINC00540-203ENST00000631321 CALM1P0DP23 149 aa14.58□□□□□ -0.07
LINC00540-203ENST00000631321 CALM2P0DP24 149 aa14.58□□□□□ -0.07
LINC00540-203ENST00000631321 CALM3P0DP25 149 aa14.58□□□□□ -0.07
LINC00540-203ENST00000631321 GYG1P46976 350 aa14.58□□□□□ -0.07
LINC00540-203ENST00000631321 SPECC1LQ69YQ0 1117 aa14.58□□□□□ -0.07
LINC00540-203ENST00000631321 USP49Q70CQ1 688 aa14.58□□□□□ -0.07
LINC00540-203ENST00000631321 CATIPQ7Z7H3 387 aa14.58□□□□□ -0.07
LINC00540-203ENST00000631321 ANKRD18AQ8IVF6 992 aa14.58□□□□□ -0.07
LINC00540-203ENST00000631321 TNFRSF25Q93038 417 aa14.58□□□□□ -0.07
LINC00540-203ENST00000631321 ABCF2Q9UG63 623 aa14.58□□□□□ -0.07
LINC00540-203ENST00000631321 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.58□□□□□ -0.07
LINC00540-203ENST00000631321 V9GYY5 206 aaPredicted RBP14.58□□□□□ -0.07
LINC00540-203ENST00000631321 SMIM22K7EJ46 135 aa14.58□□□□□ -0.08
LINC00540-203ENST00000631321 STX10O60499 249 aa14.58□□□□□ -0.08
LINC00540-203ENST00000631321 DDAH1O94760 285 aa14.58□□□□□ -0.08
LINC00540-203ENST00000631321 SLFN14P0C7P3 912 aa14.58□□□□□ -0.08
LINC00540-203ENST00000631321 TROAPQ12815 778 aa14.58□□□□□ -0.08
LINC00540-203ENST00000631321 HOMER1Q86YM7 354 aa14.58□□□□□ -0.08
LINC00540-203ENST00000631321 GRAMD1CQ8IYS0 662 aa14.58□□□□□ -0.08
LINC00540-203ENST00000631321 FERMT2Q96AC1 680 aa14.58□□□□□ -0.08
LINC00540-203ENST00000631321 CCDC34Q96HJ3 373 aa14.58□□□□□ -0.08
LINC00540-203ENST00000631321 VPS54Q9P1Q0 977 aa14.58□□□□□ -0.08
LINC00540-203ENST00000631321 IQSEC3Q9UPP2 1182 aaPredicted RBP14.58□□□□□ -0.08
LINC00540-203ENST00000631321 AHDC1Q5TGY3 1603 aaPredicted RBP14.58□□□□□ -0.08
LINC00540-203ENST00000631321 H2AFXP16104 143 aaPredicted RBP14.57□□□□□ -0.08
LINC00540-203ENST00000631321 ZNF827Q17R98 1081 aa14.57□□□□□ -0.08
LINC00540-203ENST00000631321 IFIT1BQ5T764 474 aaKnown RBP14.57□□□□□ -0.08
LINC00540-203ENST00000631321 TC2NQ8N9U0 490 aa14.57□□□□□ -0.08
LINC00540-203ENST00000631321 MARCH10Q8NA82 808 aaPredicted RBP14.57□□□□□ -0.08
LINC00540-203ENST00000631321 ZNF384Q8TF68 577 aa14.57□□□□□ -0.08
LINC00540-203ENST00000631321 SRRTQ9BXP5 876 aaKnown RBP14.57□□□□□ -0.08
LINC00540-203ENST00000631321 KAT6BQ8WYB5 2073 aa14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms