RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 WNT10BO00744 389 aa16.73■□□□□ 0.27
USP39-220ENST00000613444 EGFRP00533 1210 aa16.73■□□□□ 0.27
USP39-220ENST00000613444 DHX36Q9H2U1 1008 aaKnown RBP16.73■□□□□ 0.27
USP39-220ENST00000613444 ZNF287Q9HBT7 754 aa16.73■□□□□ 0.27
USP39-220ENST00000613444 SERPINB13Q9UIV8 391 aa16.73■□□□□ 0.27
USP39-220ENST00000613444 NAP1L2Q9ULW6 460 aaPredicted RBP16.73■□□□□ 0.27
USP39-220ENST00000613444 CLRN2A0PK11 232 aa16.72■□□□□ 0.27
USP39-220ENST00000613444 NUCB2P80303 420 aa16.72■□□□□ 0.27
USP39-220ENST00000613444 DNAJC18Q9H819 358 aa16.72■□□□□ 0.27
USP39-220ENST00000613444 FAM217BQ9NTX9 383 aaPredicted RBP16.72■□□□□ 0.27
USP39-220ENST00000613444 TCP11L1Q9NUJ3 509 aa16.72■□□□□ 0.27
USP39-220ENST00000613444 GJA3Q9Y6H8 435 aa16.72■□□□□ 0.27
USP39-220ENST00000613444 CNTNAP1P78357 1384 aa16.72■□□□□ 0.27
USP39-220ENST00000613444 CCDC69A6NI79 296 aa16.72■□□□□ 0.27
USP39-220ENST00000613444 ZBTB43O43298 467 aa16.72■□□□□ 0.27
USP39-220ENST00000613444 SLURP2P0DP57 97 aa16.72■□□□□ 0.27
USP39-220ENST00000613444 NBPF9Q3BBW0 867 aa16.72■□□□□ 0.27
USP39-220ENST00000613444 FKBP1CQ5VVH2 108 aa16.72■□□□□ 0.27
USP39-220ENST00000613444 NFXL1Q6ZNB6 911 aa16.72■□□□□ 0.27
USP39-220ENST00000613444 ZNF444Q8N0Y2 327 aaPredicted RBP16.72■□□□□ 0.27
USP39-220ENST00000613444 MYL10Q9BUA6 226 aa16.72■□□□□ 0.27
USP39-220ENST00000613444 SLC12A7Q9Y666 1083 aa16.72■□□□□ 0.27
USP39-220ENST00000613444 HLA-DOAP06340 250 aa16.71■□□□□ 0.27
USP39-220ENST00000613444 RXRAP19793 462 aa16.71■□□□□ 0.27
USP39-220ENST00000613444 SHMT1P34896 483 aa16.71■□□□□ 0.27
USP39-220ENST00000613444 METTL16Q86W50 562 aaKnown RBP16.71■□□□□ 0.27
USP39-220ENST00000613444 MICALL2Q8IY33 904 aa16.71■□□□□ 0.27
USP39-220ENST00000613444 ANKS1AQ92625 1134 aa16.71■□□□□ 0.27
USP39-220ENST00000613444 SWAP70Q9UH65 585 aa16.71■□□□□ 0.27
USP39-220ENST00000613444 BRD1O95696 1058 aa16.71■□□□□ 0.27
USP39-220ENST00000613444 SYT1P21579 422 aa16.71■□□□□ 0.27
USP39-220ENST00000613444 CDC27P30260 824 aa16.71■□□□□ 0.27
USP39-220ENST00000613444 RCAN1P53805 252 aa16.71■□□□□ 0.27
USP39-220ENST00000613444 MICU3Q86XE3 530 aa16.71■□□□□ 0.27
USP39-220ENST00000613444 ZNF654Q8IZM8 581 aa16.71■□□□□ 0.27
USP39-220ENST00000613444 NEDD1Q8NHV4 660 aa16.71■□□□□ 0.27
USP39-220ENST00000613444 TNPO1Q92973 898 aaKnown RBP16.71■□□□□ 0.27
USP39-220ENST00000613444 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.71■□□□□ 0.27
USP39-220ENST00000613444 PI4KBQ9UBF8 816 aa16.71■□□□□ 0.27
USP39-220ENST00000613444 CNOT7Q9UIV1 285 aaKnown RBP16.71■□□□□ 0.27
USP39-220ENST00000613444 PLIN4Q96Q06 1357 aa16.7■□□□□ 0.26
USP39-220ENST00000613444 TSPY3P0CV98 308 aa16.7■□□□□ 0.26
USP39-220ENST00000613444 TSPY8P0CW00 308 aa16.7■□□□□ 0.26
USP39-220ENST00000613444 METAP2P50579 478 aaKnown RBP eCLIP16.7■□□□□ 0.262e-7■■■□□ 16.1
USP39-220ENST00000613444 IFIT1BQ5T764 474 aaKnown RBP16.7■□□□□ 0.26
USP39-220ENST00000613444 PTPDC1A2A3K4 754 aa16.7■□□□□ 0.26
USP39-220ENST00000613444 TCP10L2B9ZVM9 353 aa16.7■□□□□ 0.26
USP39-220ENST00000613444 ADD1P35611 737 aaKnown RBP16.7■□□□□ 0.26
USP39-220ENST00000613444 NOVP48745 357 aa16.7■□□□□ 0.26
USP39-220ENST00000613444 TROAPQ12815 778 aa16.7■□□□□ 0.26
USP39-220ENST00000613444 NTRK3Q16288 839 aa16.7■□□□□ 0.26
USP39-220ENST00000613444 DGKHQ86XP1 1220 aa16.7■□□□□ 0.26
USP39-220ENST00000613444 GPC2Q8N158 579 aa16.7■□□□□ 0.26
USP39-220ENST00000613444 FAM151AQ8WW52 585 aa16.7■□□□□ 0.26
USP39-220ENST00000613444 TMOD2Q9NZR1 351 aa16.7■□□□□ 0.26
USP39-220ENST00000613444 FDPSP14324 419 aaKnown RBP16.69■□□□□ 0.26
USP39-220ENST00000613444 SAMD7Q7Z3H4 446 aa16.69■□□□□ 0.26
USP39-220ENST00000613444 CHMP4CQ96CF2 233 aa16.69■□□□□ 0.26
USP39-220ENST00000613444 PGAP2Q9UHJ9 254 aa16.69■□□□□ 0.26
USP39-220ENST00000613444 TAOK2Q9UL54 1235 aa16.69■□□□□ 0.26
USP39-220ENST00000613444 GOLGA8AA7E2F4 631 aa16.68■□□□□ 0.26
USP39-220ENST00000613444 FAM83AQ86UY5 434 aa16.68■□□□□ 0.26
USP39-220ENST00000613444 CCDC144CPQ8IYA2 1237 aa16.68■□□□□ 0.26
USP39-220ENST00000613444 IGKV6D-41A0A0C4DH26 115 aa16.68■□□□□ 0.26
USP39-220ENST00000613444 STX6O43752 255 aa16.68■□□□□ 0.26
USP39-220ENST00000613444 DHX16O60231 1041 aaKnown RBP16.68■□□□□ 0.26
USP39-220ENST00000613444 AKR1B1P15121 316 aa16.68■□□□□ 0.26
USP39-220ENST00000613444 FOXP4Q8IVH2 680 aaPredicted RBP16.68■□□□□ 0.26
USP39-220ENST00000613444 ZSCAN29Q8IWY8 852 aaPredicted RBP16.68■□□□□ 0.26
USP39-220ENST00000613444 DDX11Q96FC9 970 aa16.68■□□□□ 0.26
USP39-220ENST00000613444 RNF181Q9P0P0 153 aa16.68■□□□□ 0.26
USP39-220ENST00000613444 MYH6P13533 1939 aa16.68■□□□□ 0.26
USP39-220ENST00000613444 TCHHQ07283 1943 aa16.67■□□□□ 0.26
USP39-220ENST00000613444 MYH4Q9Y623 1939 aa16.67■□□□□ 0.26
USP39-220ENST00000613444 FAM196BA6NMK8 535 aa16.67■□□□□ 0.26
USP39-220ENST00000613444 MYO1BO43795 1136 aa16.67■□□□□ 0.26
USP39-220ENST00000613444 HMGN5P82970 282 aaKnown RBP16.67■□□□□ 0.26
USP39-220ENST00000613444 CCDC178Q5BJE1 867 aa16.67■□□□□ 0.26
USP39-220ENST00000613444 TATDN1Q6P1N9 297 aa16.67■□□□□ 0.26
USP39-220ENST00000613444 SYNE3Q6ZMZ3 975 aa16.67■□□□□ 0.26
USP39-220ENST00000613444 CLEC17AQ6ZS10 378 aa16.67■□□□□ 0.26
USP39-220ENST00000613444 FANCBQ8NB91 859 aa16.67■□□□□ 0.26
USP39-220ENST00000613444 VEZTQ9HBM0 779 aa16.67■□□□□ 0.26
USP39-220ENST00000613444 GPRC5DQ9NZD1 345 aa16.67■□□□□ 0.26
USP39-220ENST00000613444 MTMR6Q9Y217 621 aa16.67■□□□□ 0.26
USP39-220ENST00000613444 PPFIA3O75145 1194 aa16.67■□□□□ 0.26
USP39-220ENST00000613444 TBC1D10BQ4KMP7 808 aaPredicted RBP16.67■□□□□ 0.26
USP39-220ENST00000613444 RBM26Q5T8P6 1007 aaKnown RBP16.67■□□□□ 0.26
USP39-220ENST00000613444 CEP95Q96GE4 821 aa16.67■□□□□ 0.26
USP39-220ENST00000613444 ASTN2O75129 1339 aaPredicted RBP16.66■□□□□ 0.26
USP39-220ENST00000613444 DDAH1O94760 285 aa16.66■□□□□ 0.26
USP39-220ENST00000613444 NFKBIBQ15653 356 aa16.66■□□□□ 0.26
USP39-220ENST00000613444 RTN1Q16799 776 aa16.66■□□□□ 0.26
USP39-220ENST00000613444 C9orf131Q5VYM1 1079 aa16.66■□□□□ 0.26
USP39-220ENST00000613444 LARP1BQ659C4 914 aaKnown RBP16.66■□□□□ 0.26
USP39-220ENST00000613444 CATIPQ7Z7H3 387 aa16.66■□□□□ 0.26
USP39-220ENST00000613444 CDAN1Q8IWY9 1227 aa16.66■□□□□ 0.26
USP39-220ENST00000613444 CSRNP1Q96S65 589 aa16.66■□□□□ 0.26
USP39-220ENST00000613444 TMEM39BQ9GZU3 492 aa16.66■□□□□ 0.26
USP39-220ENST00000613444 WDR33Q9C0J8 1336 aaKnown RBP16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms