RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 DCP1AQ9NPI6 582 aaPredicted RBP24.62■■□□□ 1.53
VPS53-210ENST00000571456 PATL2C9JE40 543 aaKnown RBP24.61■■□□□ 1.53
VPS53-210ENST00000571456 M0R2C6 588 aa24.61■■□□□ 1.53
VPS53-210ENST00000571456 MAP3K10Q02779 954 aa24.61■■□□□ 1.53
VPS53-210ENST00000571456 NMIQ13287 307 aaPredicted RBP24.61■■□□□ 1.53
VPS53-210ENST00000571456 TAF1CQ15572 869 aaPredicted RBP24.61■■□□□ 1.53
VPS53-210ENST00000571456 SLFNL1Q499Z3 407 aa24.61■■□□□ 1.53
VPS53-210ENST00000571456 EHD4Q9H223 541 aa24.61■■□□□ 1.53
VPS53-210ENST00000571456 ZFYVE28Q9HCC9 887 aa24.61■■□□□ 1.53
VPS53-210ENST00000571456 A0A0D9SFI3 127 aa24.6■■□□□ 1.53
VPS53-210ENST00000571456 USP2O75604 605 aaPredicted RBP24.6■■□□□ 1.53
VPS53-210ENST00000571456 CHGBP05060 677 aa24.6■■□□□ 1.53
VPS53-210ENST00000571456 CASC1Q6TDU7 716 aa24.6■■□□□ 1.53
VPS53-210ENST00000571456 MS4A4AQ96JQ5 239 aa24.6■■□□□ 1.53
VPS53-210ENST00000571456 ZNF341Q9BYN7 854 aa24.6■■□□□ 1.53
VPS53-210ENST00000571456 ARPP21Q9UBL0 812 aaPredicted RBP24.6■■□□□ 1.53
VPS53-210ENST00000571456 CCDC171Q6TFL3 1326 aa24.6■■□□□ 1.53
VPS53-210ENST00000571456 DDTLA6NHG4 134 aaPredicted RBP24.59■■□□□ 1.53
VPS53-210ENST00000571456 CHMLP26374 656 aa24.59■■□□□ 1.53
VPS53-210ENST00000571456 CWC27Q6UX04 472 aaKnown RBP24.59■■□□□ 1.53
VPS53-210ENST00000571456 METTL16Q86W50 562 aaKnown RBP24.59■■□□□ 1.53
VPS53-210ENST00000571456 ZFPM1Q8IX07 1006 aa24.59■■□□□ 1.53
VPS53-210ENST00000571456 SDR42E1Q8WUS8 393 aa24.59■■□□□ 1.53
VPS53-210ENST00000571456 FAM227BQ96M60 508 aa24.59■■□□□ 1.53
VPS53-210ENST00000571456 SEC62Q99442 399 aaKnown RBP24.59■■□□□ 1.53
VPS53-210ENST00000571456 MCM9Q9NXL9 1143 aa24.59■■□□□ 1.53
VPS53-210ENST00000571456 BAZ2AQ9UIF9 1905 aaKnown RBP24.59■■□□□ 1.53
VPS53-210ENST00000571456 ZSWIM8A7E2V4 1837 aa24.58■■□□□ 1.53
VPS53-210ENST00000571456 POLR3DP05423 398 aaPredicted RBP24.58■■□□□ 1.53
VPS53-210ENST00000571456 SH3BP5LQ7L8J4 393 aa24.58■■□□□ 1.53
VPS53-210ENST00000571456 OPTNQ96CV9 577 aa24.58■■□□□ 1.53
VPS53-210ENST00000571456 SHISA4Q96DD7 197 aa24.58■■□□□ 1.53
VPS53-210ENST00000571456 ZMYM6O95789 1325 aa24.58■■□□□ 1.52
VPS53-210ENST00000571456 GSG1L2A8MUP6 293 aa24.57■■□□□ 1.52
VPS53-210ENST00000571456 SBK1Q52WX2 424 aa24.57■■□□□ 1.52
VPS53-210ENST00000571456 BRI3BPQ8WY22 251 aa24.57■■□□□ 1.52
VPS53-210ENST00000571456 HTATIP2Q9BUP3 242 aa24.57■■□□□ 1.52
VPS53-210ENST00000571456 TRIM34Q9BYJ4 488 aa24.57■■□□□ 1.52
VPS53-210ENST00000571456 ELP3Q9H9T3 547 aa24.57■■□□□ 1.52
VPS53-210ENST00000571456 PRKAB2O43741 272 aa24.56■■□□□ 1.52
VPS53-210ENST00000571456 APPP05067 770 aa24.56■■□□□ 1.52
VPS53-210ENST00000571456 ALX1Q15699 326 aa24.56■■□□□ 1.52
VPS53-210ENST00000571456 SERPINB13Q9UIV8 391 aa24.56■■□□□ 1.52
VPS53-210ENST00000571456 PALD1Q9ULE6 856 aa24.56■■□□□ 1.52
VPS53-210ENST00000571456 NR2E3Q9Y5X4 410 aa24.56■■□□□ 1.52
VPS53-210ENST00000571456 A0A1W2PPC1 479 aa24.55■■□□□ 1.52
VPS53-210ENST00000571456 CDC45O75419 566 aa24.55■■□□□ 1.52
VPS53-210ENST00000571456 KIF22Q14807 665 aa24.55■■□□□ 1.52
VPS53-210ENST00000571456 IFNL3Q8IZI9 196 aa24.55■■□□□ 1.52
VPS53-210ENST00000571456 CRACR2BQ8N4Y2 399 aaPredicted RBP24.55■■□□□ 1.52
VPS53-210ENST00000571456 GINM1Q9NU53 330 aa24.55■■□□□ 1.52
VPS53-210ENST00000571456 ZNF112Q9UJU3 913 aa24.55■■□□□ 1.52
VPS53-210ENST00000571456 CCL15-CCL14A0A0B4J2E2 113 aa24.54■■□□□ 1.52
VPS53-210ENST00000571456 GNRH1P01148 92 aa24.54■■□□□ 1.52
VPS53-210ENST00000571456 TDO2P48775 406 aa24.54■■□□□ 1.52
VPS53-210ENST00000571456 MAP3K9P80192 1104 aa24.54■■□□□ 1.52
VPS53-210ENST00000571456 CCL15Q16663 113 aa24.54■■□□□ 1.52
VPS53-210ENST00000571456 SKAP1Q86WV1 359 aa24.54■■□□□ 1.52
VPS53-210ENST00000571456 CDAN1Q8IWY9 1227 aa24.54■■□□□ 1.52
VPS53-210ENST00000571456 DDX55Q8NHQ9 600 aaKnown RBP eCLIP24.54■■□□□ 1.52
VPS53-210ENST00000571456 NKX2-3Q8TAU0 364 aa24.54■■□□□ 1.52
VPS53-210ENST00000571456 ARHGAP39Q9C0H5 1083 aa24.54■■□□□ 1.52
VPS53-210ENST00000571456 NAPBQ9H115 298 aa24.54■■□□□ 1.52
VPS53-210ENST00000571456 XPO5Q9HAV4 1204 aaKnown RBP eCLIP24.54■■□□□ 1.52
VPS53-210ENST00000571456 SWAP70Q9UH65 585 aa24.54■■□□□ 1.52
VPS53-210ENST00000571456 SAP30BPQ9UHR5 308 aaKnown RBP24.54■■□□□ 1.52
VPS53-210ENST00000571456 GTF3C3Q9Y5Q9 886 aa24.54■■□□□ 1.52
VPS53-210ENST00000571456 SIPA1L1O43166 1804 aa24.54■■□□□ 1.52
VPS53-210ENST00000571456 UNC80Q8N2C7 3258 aa24.53■■□□□ 1.52
VPS53-210ENST00000571456 GTF2A2P52657 109 aa24.53■■□□□ 1.52
VPS53-210ENST00000571456 PRMT2P55345 433 aa24.53■■□□□ 1.52
VPS53-210ENST00000571456 LACTBP83111 547 aaPredicted RBP24.53■■□□□ 1.52
VPS53-210ENST00000571456 C12orf60Q5U649 245 aa24.53■■□□□ 1.52
VPS53-210ENST00000571456 DSCC1Q9BVC3 393 aa24.53■■□□□ 1.52
VPS53-210ENST00000571456 ZNF287Q9HBT7 754 aa24.53■■□□□ 1.52
VPS53-210ENST00000571456 CSADQ9Y600 493 aa24.53■■□□□ 1.52
VPS53-210ENST00000571456 USP17L12C9JPN9 530 aa24.52■■□□□ 1.52
VPS53-210ENST00000571456 USP17L21D6R901 530 aa24.52■■□□□ 1.52
VPS53-210ENST00000571456 SOX1O00570 391 aaPredicted RBP24.52■■□□□ 1.52
VPS53-210ENST00000571456 SGSM2O43147 1006 aa24.52■■□□□ 1.52
VPS53-210ENST00000571456 SLC3A2P08195 630 aaKnown RBP24.52■■□□□ 1.52
VPS53-210ENST00000571456 HSPD1P10809 573 aaKnown RBP24.52■■□□□ 1.52
VPS53-210ENST00000571456 MTFR1Q15390 333 aa24.52■■□□□ 1.52
VPS53-210ENST00000571456 MIGA2Q7L4E1 593 aa24.52■■□□□ 1.52
VPS53-210ENST00000571456 UBE2Q1Q7Z7E8 422 aa24.52■■□□□ 1.52
VPS53-210ENST00000571456 ZNF589Q86UQ0 364 aaPredicted RBP24.52■■□□□ 1.52
VPS53-210ENST00000571456 FAM43AQ8N2R8 423 aa24.52■■□□□ 1.52
VPS53-210ENST00000571456 WRNIP1Q96S55 665 aa24.52■■□□□ 1.52
VPS53-210ENST00000571456 MYH8P13535 1937 aa24.52■■□□□ 1.52
VPS53-210ENST00000571456 CTNND1O60716 968 aaKnown RBP24.51■■□□□ 1.51
VPS53-210ENST00000571456 EIF5BO60841 1220 aaKnown RBP24.51■■□□□ 1.51
VPS53-210ENST00000571456 NOL9Q5SY16 702 aaKnown RBP24.51■■□□□ 1.51
VPS53-210ENST00000571456 CTR9Q6PD62 1173 aa24.51■■□□□ 1.51
VPS53-210ENST00000571456 CCDC129Q6ZRS4 1044 aa24.51■■□□□ 1.51
VPS53-210ENST00000571456 CTNNA3Q9UI47 895 aa24.51■■□□□ 1.51
VPS53-210ENST00000571456 TLR2O60603 784 aa24.5■■□□□ 1.51
VPS53-210ENST00000571456 NT5C2P49902 561 aa24.5■■□□□ 1.51
VPS53-210ENST00000571456 CNKSR2Q8WXI2 1034 aa24.5■■□□□ 1.51
VPS53-210ENST00000571456 LRCH3Q96II8 777 aa24.5■■□□□ 1.51
VPS53-210ENST00000571456 EPB41L4AQ9HCS5 686 aaPredicted RBP24.5■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms