RNA–Protein interactions for RNA: ENST00000570874.1

SMG6-208, Transcript of SMG6, nonsense mediated mRNA decay factor, human

TSL 4

Gene SMG6, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG6-208	ENST00000570874	SMARCC1	Q92922	1105 aa	Predicted RBP	4.16	□□□□□ -1.74
SMG6-208	ENST00000570874	GPR101	Q96P66	508 aa	Predicted RBP	4.16	□□□□□ -1.74
SMG6-208	ENST00000570874	IPO9	Q96P70	1041 aa	Known RBP	4.16	□□□□□ -1.74
SMG6-208	ENST00000570874	SRPK1	Q96SB4	655 aa	Known RBP	4.16	□□□□□ -1.74
SMG6-208	ENST00000570874	KCNK17	Q96T54	332 aa		4.16	□□□□□ -1.74
SMG6-208	ENST00000570874	SELENOO	Q9BVL4	669 aa		4.16	□□□□□ -1.74
SMG6-208	ENST00000570874	API5	Q9BZZ5	524 aa	Known RBP	4.16	□□□□□ -1.74
SMG6-208	ENST00000570874	PDGFD	Q9GZP0	370 aa	Predicted RBP	4.16	□□□□□ -1.74
SMG6-208	ENST00000570874	SLC52A2	Q9HAB3	445 aa		4.16	□□□□□ -1.74
SMG6-208	ENST00000570874	TMEM63C	Q9P1W3	806 aa		4.16	□□□□□ -1.74
SMG6-208	ENST00000570874	VTI1B	Q9UEU0	232 aa		4.16	□□□□□ -1.74
SMG6-208	ENST00000570874	MAFF	Q9ULX9	164 aa		4.16	□□□□□ -1.74
SMG6-208	ENST00000570874	TCHH	Q07283	1943 aa		4.16	□□□□□ -1.74
SMG6-208	ENST00000570874	CIC	Q96RK0	1608 aa	Predicted RBP	4.16	□□□□□ -1.74
SMG6-208	ENST00000570874	NHS	Q6T4R5	1651 aa		4.16	□□□□□ -1.74
SMG6-208	ENST00000570874	USP17L15	C9J2P7	530 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	USP17L10	C9JJH3	530 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	USP17L13	C9JLJ4	530 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	USP17L12	C9JPN9	530 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	USP17L11	C9JVI0	530 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	USP17L21	D6R901	530 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	USP17L18	D6R9N7	530 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	USP17L22	D6RA61	530 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	USP17L17	D6RBQ6	530 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	USP17L19	D6RCP7	530 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	USP17L20	D6RJB6	530 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	KIF1C	O43896	1103 aa	Known RBP	4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	KIF5C	O60282	957 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	PRMT3	O60678	531 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	COQ9	O75208	318 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	ALDH1L1	O75891	902 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	SLC34A2	O95436	690 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	NBPF7	P0C2Y1	421 aa	Predicted RBP	4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	HCLS1	P14317	486 aa	Predicted RBP	4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	IL2RB	P14784	551 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	NAT1	P18440	290 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	RPL17	P18621	184 aa	Known RBP	4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	PPM1F	P49593	454 aa	Predicted RBP	4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	NAP1L1	P55209	391 aa	Known RBP	4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	USP17L24	Q0WX57	530 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	ZNF211	Q13398	564 aa	Predicted RBP	4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	TMED1	Q13445	227 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	FKBP5	Q13451	457 aa	Predicted RBP	4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	PDE1C	Q14123	709 aa	Predicted RBP	4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	TRIM29	Q14134	588 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	TOMM20	Q15388	145 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874		Q3C1V9	767 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	CCDC30	Q5VVM6	783 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	KSR2	Q6VAB6	950 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	OTUD6A	Q7L8S5	288 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	TMC4	Q7Z404	712 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	RIC3	Q7Z5B4	369 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	BRSK2	Q8IWQ3	736 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	IFNL2	Q8IZJ0	200 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	ZNF654	Q8IZM8	581 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	MIGA1	Q8NAN2	632 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	ACRBP	Q8NEB7	543 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	DDX54	Q8TDD1	881 aa	Known RBP	4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	HELQ	Q8TDG4	1101 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	FBXO41	Q8TF61	875 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	SKA1	Q96BD8	255 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	ZNF496	Q96IT1	587 aa	Predicted RBP	4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	MPP4	Q96JB8	637 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	SERINC2	Q96SA4	455 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	C22orf23	Q9BZE7	217 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	NBPF3	Q9H094	633 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	PTPRH	Q9HD43	1115 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	RIC8A	Q9NPQ8	531 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	KMT5A	Q9NQR1	393 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	FANCL	Q9NW38	375 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	CDV3	Q9UKY7	258 aa	Known RBP	4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	SPG7	Q9UQ90	795 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	IKBKG	Q9Y6K9	419 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	UBR3	Q6ZT12	1888 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	PTPRC	P08575	1304 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	PCDH11X	Q9BZA7	1347 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	PCDH11Y	Q9BZA8	1340 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	SLIT2	O94813	1529 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	AKAP11	Q9UKA4	1901 aa		4.15	□□□□□ -1.75
SMG6-208	ENST00000570874	TNS2	Q63HR2	1409 aa		4.14	□□□□□ -1.75
SMG6-208	ENST00000570874	ZNF831	Q5JPB2	1677 aa		4.14	□□□□□ -1.75
SMG6-208	ENST00000570874	GTPBP10	A4D1E9	387 aa	Known RBP	4.14	□□□□□ -1.75
SMG6-208	ENST00000570874	PRSS47	A8MTI9	375 aa		4.14	□□□□□ -1.75
SMG6-208	ENST00000570874	UBAP1L	F5GYI3	381 aa		4.14	□□□□□ -1.75
SMG6-208	ENST00000570874	C21orf2	O43822	256 aa		4.14	□□□□□ -1.75
SMG6-208	ENST00000570874	SCGB1D2	O95969	90 aa		4.14	□□□□□ -1.75
SMG6-208	ENST00000570874	CCDC159	P0C7I6	412 aa		4.14	□□□□□ -1.75
SMG6-208	ENST00000570874	SRGN	P10124	158 aa		4.14	□□□□□ -1.75
SMG6-208	ENST00000570874	OSBP	P22059	807 aa		4.14	□□□□□ -1.75
SMG6-208	ENST00000570874	MASP1	P48740	699 aa		4.14	□□□□□ -1.75
SMG6-208	ENST00000570874	CABP4	P57796	275 aa		4.14	□□□□□ -1.75
SMG6-208	ENST00000570874	NUCB1	Q02818	461 aa		4.14	□□□□□ -1.75
SMG6-208	ENST00000570874	AIMP1	Q12904	312 aa	Known RBP	4.14	□□□□□ -1.75
SMG6-208	ENST00000570874	IFT88	Q13099	833 aa		4.14	□□□□□ -1.75
SMG6-208	ENST00000570874	PTGDR	Q13258	359 aa		4.14	□□□□□ -1.75
SMG6-208	ENST00000570874	E2F5	Q15329	346 aa		4.14	□□□□□ -1.75
SMG6-208	ENST00000570874	SPECC1	Q5M775	1068 aa		4.14	□□□□□ -1.75
SMG6-208	ENST00000570874	RC3H1	Q5TC82	1133 aa	Known RBP	4.14	□□□□□ -1.75
SMG6-208	ENST00000570874	ANO1	Q5XXA6	986 aa		4.14	□□□□□ -1.75
SMG6-208	ENST00000570874	TSHZ3	Q63HK5	1081 aa		4.14	□□□□□ -1.75

Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms