RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 MMP1P03956 469 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 PICALMQ13492 652 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 SEC23AQ15436 765 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 KCNF1Q9H3M0 494 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 CLIP2Q9UDT6 1046 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 STX8Q9UNK0 236 aa11.45□□□□□ -0.58
VPS53-206ENST00000570359 TFAP4Q01664 338 aa11.44□□□□□ -0.58
VPS53-206ENST00000570359 DDR1Q08345 913 aa11.44□□□□□ -0.58
VPS53-206ENST00000570359 SLC39A14Q15043 492 aa11.44□□□□□ -0.58
VPS53-206ENST00000570359 HS1BP3Q53T59 392 aa11.44□□□□□ -0.58
VPS53-206ENST00000570359 EARS2Q5JPH6 523 aaKnown RBP11.44□□□□□ -0.58
VPS53-206ENST00000570359 AXDND1Q5T1B0 1012 aaPredicted RBP11.44□□□□□ -0.58
VPS53-206ENST00000570359 KRT27Q7Z3Y8 459 aa11.44□□□□□ -0.58
VPS53-206ENST00000570359 ZNF804AQ7Z570 1209 aa11.44□□□□□ -0.58
VPS53-206ENST00000570359 NBPF11Q86T75 865 aa11.44□□□□□ -0.58
VPS53-206ENST00000570359 CEP57L1Q8IYX8 460 aa11.44□□□□□ -0.58
VPS53-206ENST00000570359 GPKOWQ92917 476 aaPredicted RBP eCLIP11.44□□□□□ -0.58
VPS53-206ENST00000570359 SHISA4Q96DD7 197 aa11.44□□□□□ -0.58
VPS53-206ENST00000570359 NOL10Q9BSC4 688 aaKnown RBP11.44□□□□□ -0.58
VPS53-206ENST00000570359 ECM29Q5VYK3 1845 aa11.44□□□□□ -0.58
VPS53-206ENST00000570359 XDHP47989 1333 aa11.44□□□□□ -0.58
VPS53-206ENST00000570359 DEXIO95424 95 aa11.44□□□□□ -0.58
VPS53-206ENST00000570359 GOLGA8HP0CJ92 632 aa11.44□□□□□ -0.58
VPS53-206ENST00000570359 ZNF75DP51815 510 aa11.44□□□□□ -0.58
VPS53-206ENST00000570359 BRIP1Q9BX63 1249 aa11.44□□□□□ -0.58
VPS53-206ENST00000570359 CCDC196A0A1B0GTZ2 297 aa11.43□□□□□ -0.58
VPS53-206ENST00000570359 SMC2O95347 1197 aa11.43□□□□□ -0.58
VPS53-206ENST00000570359 TOB1P50616 345 aaPredicted RBP11.43□□□□□ -0.58
VPS53-206ENST00000570359 DOK7Q18PE1 504 aa11.43□□□□□ -0.58
VPS53-206ENST00000570359 ATL3Q6DD88 541 aa11.43□□□□□ -0.58
VPS53-206ENST00000570359 RBM43Q6ZSC3 357 aaKnown RBP11.43□□□□□ -0.58
VPS53-206ENST00000570359 USP49Q70CQ1 688 aa11.43□□□□□ -0.58
VPS53-206ENST00000570359 CTCFLQ8NI51 663 aaPredicted RBP11.43□□□□□ -0.58
VPS53-206ENST00000570359 WASF1Q92558 559 aa11.43□□□□□ -0.58
VPS53-206ENST00000570359 ANO10Q9NW15 660 aa11.43□□□□□ -0.58
VPS53-206ENST00000570359 GGA1Q9UJY5 639 aa11.43□□□□□ -0.58
VPS53-206ENST00000570359 A0A1B0GUL6 1792 aa11.43□□□□□ -0.58
VPS53-206ENST00000570359 WNT7AO00755 349 aa11.43□□□□□ -0.58
VPS53-206ENST00000570359 ADAMTS3O15072 1205 aa11.43□□□□□ -0.58
VPS53-206ENST00000570359 CTAGE5O15320 804 aa11.43□□□□□ -0.58
VPS53-206ENST00000570359 BTDP43251 543 aa11.43□□□□□ -0.58
VPS53-206ENST00000570359 PLCD1P51178 756 aa11.43□□□□□ -0.58
VPS53-206ENST00000570359 ZNF174Q15697 407 aa11.43□□□□□ -0.58
VPS53-206ENST00000570359 ZNF827Q17R98 1081 aa11.43□□□□□ -0.58
VPS53-206ENST00000570359 MFSD14BQ5SR56 506 aa11.43□□□□□ -0.58
VPS53-206ENST00000570359 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.43□□□□□ -0.58
VPS53-206ENST00000570359 KIAA1468Q9P260 1216 aa11.43□□□□□ -0.58
VPS53-206ENST00000570359 LMOD1P29536 600 aaPredicted RBP11.42□□□□□ -0.58
VPS53-206ENST00000570359 EIF6P56537 245 aaKnown RBP11.42□□□□□ -0.58
VPS53-206ENST00000570359 GTF2IP78347 998 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 PDE4BQ07343 736 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 PTPAQ15257 358 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 CCDC144BQ3MJ40 725 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 LONRF3Q496Y0 759 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 TMTC2Q8N394 836 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 CNNM3Q8NE01 707 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 RASGRP4Q8TDF6 673 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 MAP3K14Q99558 947 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 POLLQ9UGP5 575 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 NHSQ6T4R5 1651 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 GOLGA6L6A8MZA4 724 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 RAD21O60216 631 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 OFD1O75665 1012 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 TSPY3P0CV98 308 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 TSPY8P0CW00 308 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 SLURP2P0DP57 97 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 CASP1P29466 404 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 RBM10P98175 930 aaKnown RBP11.42□□□□□ -0.58
VPS53-206ENST00000570359 IQCB1Q15051 598 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 DHX40Q8IX18 779 aaKnown RBP11.42□□□□□ -0.58
VPS53-206ENST00000570359 STAG2Q8N3U4 1231 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 SRBD1Q8N5C6 995 aaKnown RBP11.42□□□□□ -0.58
VPS53-206ENST00000570359 TDRD7Q8NHU6 1098 aaKnown RBP11.42□□□□□ -0.58
VPS53-206ENST00000570359 STAMQ92783 540 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 KAT14Q9H8E8 782 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 CD209Q9NNX6 404 aa11.42□□□□□ -0.58
VPS53-206ENST00000570359 MYH6P13533 1939 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 A0A1W2PQ27 194 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 A0A1W2PQ64 194 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 A0A1W2PQD8 194 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 SEMA3EO15041 775 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 POLR2DO15514 142 aaKnown RBP11.41□□□□□ -0.58
VPS53-206ENST00000570359 ZNF500O60304 480 aaPredicted RBP11.41□□□□□ -0.58
VPS53-206ENST00000570359 U2AF2P26368 475 aaKnown RBP eCLIP11.41□□□□□ -0.58
VPS53-206ENST00000570359 SCNN1DP51172 638 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 TXNRD1Q16881 649 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 SPTY2D1Q68D10 685 aaPredicted RBP11.41□□□□□ -0.58
VPS53-206ENST00000570359 HOMER1Q86YM7 354 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 JMYQ8N9B5 988 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 TSC1Q92574 1164 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 VAT1LQ9HCJ6 419 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 KCNH3Q9ULD8 1083 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 TAF1LQ8IZX4 1826 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 G3V3G9 751 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 CMA1P23946 247 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 NLRP5P59047 1200 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 NOLC1Q14978 699 aaKnown RBP eCLIP11.41□□□□□ -0.58
VPS53-206ENST00000570359 PKN1Q16512 942 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 DCAF8Q5TAQ9 597 aa11.41□□□□□ -0.58
VPS53-206ENST00000570359 CLEC10AQ8IUN9 316 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms