RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 PDLIM7Q9NR12 457 aa22.59■■□□□ 1.21
CLK3-227ENST00000570296 TMOD4Q9NZQ9 345 aa22.59■■□□□ 1.21
CLK3-227ENST00000570296 FAM196BA6NMK8 535 aa22.58■■□□□ 1.21
CLK3-227ENST00000570296 SNX17Q15036 470 aa22.58■■□□□ 1.21
CLK3-227ENST00000570296 KLHDC4Q8TBB5 520 aa22.58■■□□□ 1.21
CLK3-227ENST00000570296 WDR18Q9BV38 432 aa22.58■■□□□ 1.21
CLK3-227ENST00000570296 DENND2AQ9ULE3 1009 aa22.58■■□□□ 1.21
CLK3-227ENST00000570296 FANCIQ9NVI1 1328 aa22.57■■□□□ 1.2
CLK3-227ENST00000570296 DNAJB2P25686 324 aa22.57■■□□□ 1.2
CLK3-227ENST00000570296 BACE1P56817 501 aa22.57■■□□□ 1.2
CLK3-227ENST00000570296 MRPS5P82675 430 aaKnown RBP22.57■■□□□ 1.2
CLK3-227ENST00000570296 MTMR2Q13614 643 aa22.57■■□□□ 1.2
CLK3-227ENST00000570296 Q3C1V9 767 aa22.57■■□□□ 1.2
CLK3-227ENST00000570296 SLC4A10Q6U841 1118 aa22.57■■□□□ 1.2
CLK3-227ENST00000570296 ARRDC4Q8NCT1 418 aa22.57■■□□□ 1.2
CLK3-227ENST00000570296 EDC3Q96F86 508 aaKnown RBP22.57■■□□□ 1.2
CLK3-227ENST00000570296 ZBTB22O15209 634 aa22.56■■□□□ 1.2
CLK3-227ENST00000570296 GLRX3O76003 335 aaKnown RBP22.56■■□□□ 1.2
CLK3-227ENST00000570296 CNGA1P29973 690 aa22.56■■□□□ 1.2
CLK3-227ENST00000570296 BTDP43251 543 aa22.56■■□□□ 1.2
CLK3-227ENST00000570296 TRIM60Q495X7 471 aa22.56■■□□□ 1.2
CLK3-227ENST00000570296 AKNAD1Q5T1N1 836 aa22.56■■□□□ 1.2
CLK3-227ENST00000570296 DZIP1Q86YF9 867 aaKnown RBP22.56■■□□□ 1.2
CLK3-227ENST00000570296 CWC22Q9HCG8 908 aaKnown RBP22.56■■□□□ 1.2
CLK3-227ENST00000570296 TRIM43BA6NCK2 446 aa22.55■■□□□ 1.2
CLK3-227ENST00000570296 TRIM43Q96BQ3 446 aaPredicted RBP22.55■■□□□ 1.2
CLK3-227ENST00000570296 ZNF576Q9H609 170 aa22.55■■□□□ 1.2
CLK3-227ENST00000570296 FLRT1Q9NZU1 646 aa22.55■■□□□ 1.2
CLK3-227ENST00000570296 HSFX4A0A1B0GTS1 333 aaPredicted RBP22.54■■□□□ 1.2
CLK3-227ENST00000570296 HSFX3A0A1B0GWH4 333 aaPredicted RBP22.54■■□□□ 1.2
CLK3-227ENST00000570296 C19orf81C9J6K1 198 aa22.54■■□□□ 1.2
CLK3-227ENST00000570296 KBTBD13C9JR72 458 aa22.54■■□□□ 1.2
CLK3-227ENST00000570296 EYA2O00167 538 aa22.54■■□□□ 1.2
CLK3-227ENST00000570296 GJC2Q5T442 439 aaPredicted RBP22.54■■□□□ 1.2
CLK3-227ENST00000570296 C1orf53Q5VUE5 145 aa22.54■■□□□ 1.2
CLK3-227ENST00000570296 SH3RF1Q7Z6J0 888 aa22.54■■□□□ 1.2
CLK3-227ENST00000570296 IL27Q8NEV9 243 aa22.54■■□□□ 1.2
CLK3-227ENST00000570296 GAS2L1Q99501 681 aaPredicted RBP22.54■■□□□ 1.2
CLK3-227ENST00000570296 RHBDL3P58872 404 aa22.53■■□□□ 1.2
CLK3-227ENST00000570296 RRP1BQ14684 758 aaKnown RBP22.53■■□□□ 1.2
CLK3-227ENST00000570296 PAGR1Q9BTK6 254 aa22.53■■□□□ 1.2
CLK3-227ENST00000570296 HERC5Q9UII4 1024 aaKnown RBP22.53■■□□□ 1.2
CLK3-227ENST00000570296 HCN4Q9Y3Q4 1203 aa22.53■■□□□ 1.2
CLK3-227ENST00000570296 MROH7-TTC4A0A0A0MT08 1334 aa22.53■■□□□ 1.2
CLK3-227ENST00000570296 SLC15A5A6NIM6 579 aa22.52■■□□□ 1.2
CLK3-227ENST00000570296 HOXC6P09630 235 aa22.52■■□□□ 1.2
CLK3-227ENST00000570296 CCNA1P78396 465 aa22.52■■□□□ 1.2
CLK3-227ENST00000570296 ATP2B2Q01814 1243 aa22.52■■□□□ 1.2
CLK3-227ENST00000570296 GPR75-ASB3A0A0A6YYF3 556 aa22.51■■□□□ 1.19
CLK3-227ENST00000570296 MAP4K4O95819 1239 aaPredicted RBP22.51■■□□□ 1.19
CLK3-227ENST00000570296 ATP2B3Q16720 1220 aa22.51■■□□□ 1.19
CLK3-227ENST00000570296 PPM1EQ8WY54 764 aa22.51■■□□□ 1.19
CLK3-227ENST00000570296 TIFAQ96CG3 184 aa22.51■■□□□ 1.19
CLK3-227ENST00000570296 MUC6Q6W4X9 2439 aa22.51■■□□□ 1.19
CLK3-227ENST00000570296 CHD9Q3L8U1 2897 aa22.51■■□□□ 1.19
CLK3-227ENST00000570296 ASNSP08243 561 aa22.5■■□□□ 1.19
CLK3-227ENST00000570296 EPHB4P54760 987 aa22.5■■□□□ 1.19
CLK3-227ENST00000570296 EXOSC9Q06265 439 aaKnown RBP22.5■■□□□ 1.19
CLK3-227ENST00000570296 SPTY2D1Q68D10 685 aaPredicted RBP22.5■■□□□ 1.19
CLK3-227ENST00000570296 POTEEQ6S8J3 1075 aa22.5■■□□□ 1.19
CLK3-227ENST00000570296 TRPV1Q8NER1 839 aa22.5■■□□□ 1.19
CLK3-227ENST00000570296 RABGAP1Q9Y3P9 1069 aa22.5■■□□□ 1.19
CLK3-227ENST00000570296 TACC3Q9Y6A5 838 aa22.5■■□□□ 1.19
CLK3-227ENST00000570296 PDS5AQ29RF7 1337 aaKnown RBP22.5■■□□□ 1.19
CLK3-227ENST00000570296 USP17L10C9JJH3 530 aa22.49■■□□□ 1.19
CLK3-227ENST00000570296 IGHA2P01877 340 aa22.49■■□□□ 1.19
CLK3-227ENST00000570296 CYBAP13498 195 aa22.49■■□□□ 1.19
CLK3-227ENST00000570296 PTPREP23469 700 aa22.49■■□□□ 1.19
CLK3-227ENST00000570296 PHKA1P46020 1223 aa22.49■■□□□ 1.19
CLK3-227ENST00000570296 CYP2C19P33261 490 aa22.48■■□□□ 1.19
CLK3-227ENST00000570296 TLE2Q04725 743 aa22.48■■□□□ 1.19
CLK3-227ENST00000570296 NCBP3Q53F19 620 aaKnown RBP22.48■■□□□ 1.19
CLK3-227ENST00000570296 ATG9AQ7Z3C6 839 aa22.48■■□□□ 1.19
CLK3-227ENST00000570296 ABCF2Q9UG63 623 aa22.48■■□□□ 1.19
CLK3-227ENST00000570296 ITGB8P26012 769 aa22.47■■□□□ 1.19
CLK3-227ENST00000570296 RFX5P48382 616 aaPredicted RBP22.47■■□□□ 1.19
CLK3-227ENST00000570296 FPGSQ05932 587 aa22.47■■□□□ 1.19
CLK3-227ENST00000570296 GRB14Q14449 540 aa22.47■■□□□ 1.19
CLK3-227ENST00000570296 GINM1Q9NU53 330 aa22.47■■□□□ 1.19
CLK3-227ENST00000570296 IVNS1ABPQ9Y6Y0 642 aa22.47■■□□□ 1.19
CLK3-227ENST00000570296 TCF20Q9UGU0 1960 aaKnown RBP22.47■■□□□ 1.19
CLK3-227ENST00000570296 SIPA1L1O43166 1804 aa22.46■■□□□ 1.19
CLK3-227ENST00000570296 KIAA0355O15063 1070 aa22.46■■□□□ 1.19
CLK3-227ENST00000570296 CLTBP09497 229 aa22.46■■□□□ 1.19
CLK3-227ENST00000570296 ADCYAP1R1P41586 468 aa22.46■■□□□ 1.19
CLK3-227ENST00000570296 PLXNA1Q9UIW2 1896 aa22.45■■□□□ 1.19
CLK3-227ENST00000570296 SEPT4O43236 478 aa22.45■■□□□ 1.18
CLK3-227ENST00000570296 CNMDO75829 334 aa22.45■■□□□ 1.18
CLK3-227ENST00000570296 WDR78Q5VTH9 848 aa22.45■■□□□ 1.18
CLK3-227ENST00000570296 NPLOC4Q8TAT6 608 aa22.45■■□□□ 1.18
CLK3-227ENST00000570296 CEP126Q9P2H0 1117 aa22.45■■□□□ 1.18
CLK3-227ENST00000570296 PI4KBQ9UBF8 816 aa22.45■■□□□ 1.18
CLK3-227ENST00000570296 FBXO3Q9UK99 471 aa22.45■■□□□ 1.18
CLK3-227ENST00000570296 NDUFB9Q9Y6M9 179 aa22.45■■□□□ 1.18
CLK3-227ENST00000570296 ZNF236Q9UL36 1845 aa22.45■■□□□ 1.18
CLK3-227ENST00000570296 XIRP2A4UGR9 3374 aa22.44■■□□□ 1.18
CLK3-227ENST00000570296 RAG1P15918 1043 aa22.44■■□□□ 1.18
CLK3-227ENST00000570296 MECOMQ03112 1051 aa22.44■■□□□ 1.18
CLK3-227ENST00000570296 RASGRF1Q13972 1273 aa22.44■■□□□ 1.18
CLK3-227ENST00000570296 OLFML2BQ68BL8 750 aa22.44■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms