RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 MINDY4BA8MYZ0 360 aa9.33□□□□□ -0.92
VPS39-213ENST00000570062 CPLX1O14810 134 aa9.33□□□□□ -0.92
VPS39-213ENST00000570062 IFIT3O14879 490 aaKnown RBP9.33□□□□□ -0.92
VPS39-213ENST00000570062 STX6O43752 255 aa9.33□□□□□ -0.92
VPS39-213ENST00000570062 CPA1P15085 419 aa9.33□□□□□ -0.92
VPS39-213ENST00000570062 NCLP19338 710 aaKnown RBP9.33□□□□□ -0.92
VPS39-213ENST00000570062 GJB2P29033 226 aa9.33□□□□□ -0.92
VPS39-213ENST00000570062 PDIA3P30101 505 aaKnown RBP9.33□□□□□ -0.92
VPS39-213ENST00000570062 LARP1BQ659C4 914 aaKnown RBP9.33□□□□□ -0.92
VPS39-213ENST00000570062 ATL3Q6DD88 541 aa9.33□□□□□ -0.92
VPS39-213ENST00000570062 NOL8Q76FK4 1167 aaKnown RBP9.33□□□□□ -0.92
VPS39-213ENST00000570062 USP17L1Q7RTZ2 530 aa9.33□□□□□ -0.92
VPS39-213ENST00000570062 TTC6Q86TZ1 520 aa9.33□□□□□ -0.92
VPS39-213ENST00000570062 TEKT1Q969V4 418 aa9.33□□□□□ -0.92
VPS39-213ENST00000570062 ZSCAN16Q9H4T2 348 aaPredicted RBP9.33□□□□□ -0.92
VPS39-213ENST00000570062 EPB41L4AQ9HCS5 686 aaPredicted RBP9.33□□□□□ -0.92
VPS39-213ENST00000570062 DCP1AQ9NPI6 582 aaPredicted RBP9.33□□□□□ -0.92
VPS39-213ENST00000570062 SLC12A7Q9Y666 1083 aa9.33□□□□□ -0.92
VPS39-213ENST00000570062 COL1A1P02452 1464 aaPredicted RBP9.33□□□□□ -0.92
VPS39-213ENST00000570062 USP17L12C9JPN9 530 aa9.32□□□□□ -0.92
VPS39-213ENST00000570062 USP17L21D6R901 530 aa9.32□□□□□ -0.92
VPS39-213ENST00000570062 SH2B2O14492 632 aaPredicted RBP9.32□□□□□ -0.92
VPS39-213ENST00000570062 ZBTB43O43298 467 aa9.32□□□□□ -0.92
VPS39-213ENST00000570062 ZSCAN22P10073 491 aaPredicted RBP9.32□□□□□ -0.92
VPS39-213ENST00000570062 SYT1P21579 422 aa9.32□□□□□ -0.92
VPS39-213ENST00000570062 WTAPQ15007 396 aa9.32□□□□□ -0.92
VPS39-213ENST00000570062 TMEM67Q5HYA8 995 aa9.32□□□□□ -0.92
VPS39-213ENST00000570062 CTR9Q6PD62 1173 aa9.32□□□□□ -0.92
VPS39-213ENST00000570062 NFXL1Q6ZNB6 911 aa9.32□□□□□ -0.92
VPS39-213ENST00000570062 ADGRA1Q86SQ6 560 aa9.32□□□□□ -0.92
VPS39-213ENST00000570062 ZNF444Q8N0Y2 327 aaPredicted RBP9.32□□□□□ -0.92
VPS39-213ENST00000570062 SMARCC2Q8TAQ2 1214 aa9.32□□□□□ -0.92
VPS39-213ENST00000570062 TOMM22Q9NS69 142 aa9.32□□□□□ -0.92
VPS39-213ENST00000570062 MCM9Q9NXL9 1143 aa9.32□□□□□ -0.92
VPS39-213ENST00000570062 ZSWIM5Q9P217 1185 aa9.32□□□□□ -0.92
VPS39-213ENST00000570062 SERPINA10Q9UK55 444 aa9.32□□□□□ -0.92
VPS39-213ENST00000570062 HDAC9Q9UKV0 1011 aa9.32□□□□□ -0.92
VPS39-213ENST00000570062 KLF18A0A0U1RQI7 1052 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 B4E1Z4 1266 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 H3BQV1 296 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 PRKAB2O43741 272 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 BAG4O95429 457 aaKnown RBP9.31□□□□□ -0.92
VPS39-213ENST00000570062 POLR3DP05423 398 aaPredicted RBP9.31□□□□□ -0.92
VPS39-213ENST00000570062 CHRNA5P30532 468 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 BTDP43251 543 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 DYNLL1P63167 89 aaKnown RBP9.31□□□□□ -0.92
VPS39-213ENST00000570062 KCNC4Q03721 635 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 NBR1Q14596 966 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 DALRD3Q5D0E6 543 aaKnown RBP9.31□□□□□ -0.92
VPS39-213ENST00000570062 C12orf60Q5U649 245 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 TBC1D10CQ8IV04 446 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 TEX11Q8IYF3 940 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 IGDCC4Q8TDY8 1250 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 ZNF384Q8TF68 577 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 SDR42E1Q8WUS8 393 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 BBXQ8WY36 941 aaPredicted RBP9.31□□□□□ -0.92
VPS39-213ENST00000570062 ZDHHC15Q96MV8 337 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 MAP3K14Q99558 947 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 DHX36Q9H2U1 1008 aaKnown RBP9.31□□□□□ -0.92
VPS39-213ENST00000570062 MKNK2Q9HBH9 465 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 TCP11L1Q9NUJ3 509 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 RBM28Q9NW13 759 aaKnown RBP9.31□□□□□ -0.92
VPS39-213ENST00000570062 CDKN2AIPQ9NXV6 580 aaPredicted RBP9.31□□□□□ -0.92
VPS39-213ENST00000570062 RBM27Q9P2N5 1060 aaKnown RBP9.31□□□□□ -0.92
VPS39-213ENST00000570062 SWAP70Q9UH65 585 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 TTF2Q9UNY4 1162 aaKnown RBP9.31□□□□□ -0.92
VPS39-213ENST00000570062 TAF6LQ9Y6J9 622 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 DOCK2Q92608 1830 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 LRRC37AA6NMS7 1700 aa9.31□□□□□ -0.92
VPS39-213ENST00000570062 GOLGA8BA8MQT2 603 aa9.3□□□□□ -0.92
VPS39-213ENST00000570062 PPIP5K2O43314 1243 aa9.3□□□□□ -0.92
VPS39-213ENST00000570062 ECE2O60344 883 aa9.3□□□□□ -0.92
VPS39-213ENST00000570062 KDM4AO75164 1064 aa9.3□□□□□ -0.92
VPS39-213ENST00000570062 MBD3O95983 291 aa9.3□□□□□ -0.92
VPS39-213ENST00000570062 DPEP1P16444 411 aa9.3□□□□□ -0.92
VPS39-213ENST00000570062 METAP2P50579 478 aaKnown RBP eCLIP9.3□□□□□ -0.92
VPS39-213ENST00000570062 APOBRQ0VD83 1088 aa9.3□□□□□ -0.92
VPS39-213ENST00000570062 SCRN1Q12765 414 aa9.3□□□□□ -0.92
VPS39-213ENST00000570062 CATIPQ7Z7H3 387 aa9.3□□□□□ -0.92
VPS39-213ENST00000570062 DGKHQ86XP1 1220 aa9.3□□□□□ -0.92
VPS39-213ENST00000570062 TRIM22Q8IYM9 498 aa9.3□□□□□ -0.92
VPS39-213ENST00000570062 FAM177A1Q8N128 213 aaPredicted RBP9.3□□□□□ -0.92
VPS39-213ENST00000570062 OGFOD1Q8N543 542 aa9.3□□□□□ -0.92
VPS39-213ENST00000570062 NECAB1Q8N987 351 aa9.3□□□□□ -0.92
VPS39-213ENST00000570062 ZSCAN10Q96SZ4 725 aaPredicted RBP9.3□□□□□ -0.92
VPS39-213ENST00000570062 MKRN1Q9UHC7 482 aaKnown RBP9.3□□□□□ -0.92
VPS39-213ENST00000570062 TSR3Q9UJK0 312 aaKnown RBP9.3□□□□□ -0.92
VPS39-213ENST00000570062 NAP1L2Q9ULW6 460 aaPredicted RBP9.3□□□□□ -0.92
VPS39-213ENST00000570062 COL4A1P02462 1669 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 NID2Q14112 1375 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 ROBO3Q96MS0 1386 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 TSPY2A6NKD2 308 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 MAP3K7O43318 606 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 C21orf2O43822 256 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 RANBP6O60518 1105 aaKnown RBP9.29□□□□□ -0.92
VPS39-213ENST00000570062 DDAH1O94760 285 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 F13A1P00488 732 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 HLA-DOAP06340 250 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 XBP1P17861 261 aa9.29□□□□□ -0.92
VPS39-213ENST00000570062 GNAQP50148 359 aa9.29□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms