RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 FOXP1Q9H334 677 aaPredicted RBP23.42■■□□□ 1.34
CLN3-230ENST00000568076 KCNF1Q9H3M0 494 aa23.42■■□□□ 1.34
CLN3-230ENST00000568076 PLEKHA8P1O95397 391 aa23.41■■□□□ 1.34
CLN3-230ENST00000568076 LDHBP07195 334 aaKnown RBP23.41■■□□□ 1.34
CLN3-230ENST00000568076 NR5A1Q13285 461 aa23.41■■□□□ 1.34
CLN3-230ENST00000568076 FAM47AQ5JRC9 791 aa23.41■■□□□ 1.34
CLN3-230ENST00000568076 OXER1Q8TDS5 423 aa23.41■■□□□ 1.34
CLN3-230ENST00000568076 MKRN1Q9UHC7 482 aaKnown RBP23.41■■□□□ 1.34
CLN3-230ENST00000568076 TRIM5Q9C035 493 aa23.41■■□□□ 1.34
CLN3-230ENST00000568076 FAM237AA0A1B0GTK4 181 aa23.4■■□□□ 1.34
CLN3-230ENST00000568076 USP17L8P0C7I0 530 aa23.4■■□□□ 1.34
CLN3-230ENST00000568076 SLC27A3Q5K4L6 730 aa23.4■■□□□ 1.34
CLN3-230ENST00000568076 ZNF804AQ7Z570 1209 aa23.4■■□□□ 1.34
CLN3-230ENST00000568076 ST5P78524 1137 aa23.4■■□□□ 1.34
CLN3-230ENST00000568076 DIXDC1Q155Q3 683 aa23.4■■□□□ 1.34
CLN3-230ENST00000568076 RESP18Q5W5W9 173 aa23.4■■□□□ 1.34
CLN3-230ENST00000568076 FBXW7Q969H0 707 aa23.4■■□□□ 1.34
CLN3-230ENST00000568076 MCM9Q9NXL9 1143 aa23.4■■□□□ 1.34
CLN3-230ENST00000568076 hCG_1642624A0A1W2PR95 340 aa23.39■■□□□ 1.33
CLN3-230ENST00000568076 SYKP43405 635 aa23.39■■□□□ 1.33
CLN3-230ENST00000568076 DDR1Q08345 913 aa23.39■■□□□ 1.33
CLN3-230ENST00000568076 SLC4A8Q2Y0W8 1093 aa23.39■■□□□ 1.33
CLN3-230ENST00000568076 SH3RF3Q8TEJ3 882 aaPredicted RBP23.39■■□□□ 1.33
CLN3-230ENST00000568076 PIBF1Q8WXW3 757 aa23.39■■□□□ 1.33
CLN3-230ENST00000568076 RBM28Q9NW13 759 aaKnown RBP23.39■■□□□ 1.33
CLN3-230ENST00000568076 GOLGA6L19H0YKK7 550 aa23.38■■□□□ 1.33
CLN3-230ENST00000568076 PRPF3O43395 683 aaKnown RBP23.38■■□□□ 1.33
CLN3-230ENST00000568076 CUTAO60888 179 aa23.38■■□□□ 1.33
CLN3-230ENST00000568076 DDAH1O94760 285 aa23.38■■□□□ 1.33
CLN3-230ENST00000568076 TRIM37O94972 964 aa23.38■■□□□ 1.33
CLN3-230ENST00000568076 SLC3A2P08195 630 aaKnown RBP23.38■■□□□ 1.33
CLN3-230ENST00000568076 CEP57L1Q8IYX8 460 aa23.38■■□□□ 1.33
CLN3-230ENST00000568076 TIGD1Q96MW7 591 aa23.38■■□□□ 1.33
CLN3-230ENST00000568076 VPS54Q9P1Q0 977 aa23.38■■□□□ 1.33
CLN3-230ENST00000568076 UFL1O94874 794 aa23.38■■□□□ 1.33
CLN3-230ENST00000568076 CALM1P0DP23 149 aa23.38■■□□□ 1.33
CLN3-230ENST00000568076 CALM2P0DP24 149 aa23.38■■□□□ 1.33
CLN3-230ENST00000568076 CALM3P0DP25 149 aa23.38■■□□□ 1.33
CLN3-230ENST00000568076 DPCR1Q3MIW9 517 aa23.38■■□□□ 1.33
CLN3-230ENST00000568076 SARM1Q6SZW1 724 aa23.38■■□□□ 1.33
CLN3-230ENST00000568076 GOLGA6L6A8MZA4 724 aa23.37■■□□□ 1.33
CLN3-230ENST00000568076 IGSF3O75054 1194 aa23.37■■□□□ 1.33
CLN3-230ENST00000568076 RILPL1Q5EBL4 403 aa23.37■■□□□ 1.33
CLN3-230ENST00000568076 TMTC3Q6ZXV5 915 aa23.37■■□□□ 1.33
CLN3-230ENST00000568076 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.37■■□□□ 1.33
CLN3-230ENST00000568076 C17orf53Q8N3J3 647 aaPredicted RBP23.37■■□□□ 1.33
CLN3-230ENST00000568076 RBM17Q96I25 401 aaKnown RBP23.37■■□□□ 1.33
CLN3-230ENST00000568076 V9GY48 417 aaPredicted RBP23.37■■□□□ 1.33
CLN3-230ENST00000568076 MYH6P13533 1939 aa23.37■■□□□ 1.33
CLN3-230ENST00000568076 TPM3P06753 285 aa23.36■■□□□ 1.33
CLN3-230ENST00000568076 AKAP17AQ02040 695 aaKnown RBP23.36■■□□□ 1.33
CLN3-230ENST00000568076 PDE4BQ07343 736 aa23.36■■□□□ 1.33
CLN3-230ENST00000568076 C12orf60Q5U649 245 aa23.36■■□□□ 1.33
CLN3-230ENST00000568076 KRT27Q7Z3Y8 459 aa23.36■■□□□ 1.33
CLN3-230ENST00000568076 PHF20Q9BVI0 1012 aa23.36■■□□□ 1.33
CLN3-230ENST00000568076 CD209Q9NNX6 404 aa23.36■■□□□ 1.33
CLN3-230ENST00000568076 PCDHB6Q9Y5E3 794 aa23.36■■□□□ 1.33
CLN3-230ENST00000568076 BECN2A8MW95 431 aa23.36■■□□□ 1.33
CLN3-230ENST00000568076 POLRMTO00411 1230 aaKnown RBP23.36■■□□□ 1.33
CLN3-230ENST00000568076 PTGS1P23219 599 aa23.36■■□□□ 1.33
CLN3-230ENST00000568076 RCSD1Q6JBY9 416 aa23.36■■□□□ 1.33
CLN3-230ENST00000568076 PROM2Q8N271 834 aa23.36■■□□□ 1.33
CLN3-230ENST00000568076 AOPEPQ8N6M6 819 aa23.36■■□□□ 1.33
CLN3-230ENST00000568076 KRI1Q8N9T8 703 aaKnown RBP23.36■■□□□ 1.33
CLN3-230ENST00000568076 NRBP1Q9UHY1 535 aa23.36■■□□□ 1.33
CLN3-230ENST00000568076 BRWD3Q6RI45 1802 aa23.35■■□□□ 1.33
CLN3-230ENST00000568076 CNTNAP5Q8WYK1 1306 aa23.35■■□□□ 1.33
CLN3-230ENST00000568076 TSPY2A6NKD2 308 aa23.35■■□□□ 1.33
CLN3-230ENST00000568076 ATP2B4P23634 1241 aa23.35■■□□□ 1.33
CLN3-230ENST00000568076 USP5P45974 858 aa23.35■■□□□ 1.33
CLN3-230ENST00000568076 PPP4CP60510 307 aa23.35■■□□□ 1.33
CLN3-230ENST00000568076 GRIN1Q05586 938 aa23.35■■□□□ 1.33
CLN3-230ENST00000568076 SRBD1Q8N5C6 995 aaKnown RBP23.35■■□□□ 1.33
CLN3-230ENST00000568076 FBXO2Q9UK22 296 aaPredicted RBP23.35■■□□□ 1.33
CLN3-230ENST00000568076 PYCARDQ9ULZ3 195 aa23.35■■□□□ 1.33
CLN3-230ENST00000568076 BIN1O00499 593 aa23.34■■□□□ 1.33
CLN3-230ENST00000568076 RBM6P78332 1123 aaKnown RBP23.34■■□□□ 1.33
CLN3-230ENST00000568076 GSTO1P78417 241 aa23.34■■□□□ 1.33
CLN3-230ENST00000568076 DYNLL2Q96FJ2 89 aa23.34■■□□□ 1.33
CLN3-230ENST00000568076 CABP5Q9NP86 173 aa23.34■■□□□ 1.33
CLN3-230ENST00000568076 GGA1Q9UJY5 639 aa23.34■■□□□ 1.33
CLN3-230ENST00000568076 FAM205CA6NFA0 338 aa23.34■■□□□ 1.33
CLN3-230ENST00000568076 IL1R1P14778 569 aa23.34■■□□□ 1.33
CLN3-230ENST00000568076 PTPREP23469 700 aa23.34■■□□□ 1.33
CLN3-230ENST00000568076 HOXA10P31260 410 aaPredicted RBP23.34■■□□□ 1.33
CLN3-230ENST00000568076 NLRP12P59046 1061 aa23.34■■□□□ 1.33
CLN3-230ENST00000568076 NOLC1Q14978 699 aaKnown RBP eCLIP23.34■■□□□ 1.33
CLN3-230ENST00000568076 EARS2Q5JPH6 523 aaKnown RBP23.34■■□□□ 1.33
CLN3-230ENST00000568076 CCDC186Q7Z3E2 898 aa23.34■■□□□ 1.33
CLN3-230ENST00000568076 RTFDC1Q9BY42 306 aaPredicted RBP23.34■■□□□ 1.33
CLN3-230ENST00000568076 NAT10Q9H0A0 1025 aaKnown RBP23.34■■□□□ 1.33
CLN3-230ENST00000568076 CDC25BP30305 580 aa23.33■■□□□ 1.33
CLN3-230ENST00000568076 SPECC1Q5M775 1068 aa23.33■■□□□ 1.33
CLN3-230ENST00000568076 IL17RBQ9NRM6 502 aa23.33■■□□□ 1.33
CLN3-230ENST00000568076 POLLQ9UGP5 575 aa23.33■■□□□ 1.33
CLN3-230ENST00000568076 KCNH3Q9ULD8 1083 aa23.33■■□□□ 1.33
CLN3-230ENST00000568076 ROBO3Q96MS0 1386 aa23.33■■□□□ 1.33
CLN3-230ENST00000568076 BBOX1O75936 387 aa23.32■■□□□ 1.32
CLN3-230ENST00000568076 BAG3O95817 575 aa23.32■■□□□ 1.32
CLN3-230ENST00000568076 XBP1P17861 261 aa23.32■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms