RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 SKAP1Q86WV1 359 aa11.77□□□□□ -0.53
CLK3-220ENST00000567992 FAM43AQ8N2R8 423 aa11.77□□□□□ -0.53
CLK3-220ENST00000567992 SLC44A5Q8NCS7 719 aa11.77□□□□□ -0.53
CLK3-220ENST00000567992 R3HDMLQ9H3Y0 253 aa11.77□□□□□ -0.53
CLK3-220ENST00000567992 PICK1Q9NRD5 415 aa11.77□□□□□ -0.53
CLK3-220ENST00000567992 ZBTB21Q9ULJ3 1066 aa11.77□□□□□ -0.53
CLK3-220ENST00000567992 ZHX2Q9Y6X8 837 aa11.77□□□□□ -0.53
CLK3-220ENST00000567992 CASP8AP2Q9UKL3 1982 aa11.76□□□□□ -0.53
CLK3-220ENST00000567992 A0A0G2JLL6 359 aaPredicted RBP11.76□□□□□ -0.53
CLK3-220ENST00000567992 USP17L12C9JPN9 530 aa11.76□□□□□ -0.53
CLK3-220ENST00000567992 USP17L21D6R901 530 aa11.76□□□□□ -0.53
CLK3-220ENST00000567992 GNAT2P19087 354 aa11.76□□□□□ -0.53
CLK3-220ENST00000567992 NMIQ13287 307 aaPredicted RBP11.76□□□□□ -0.53
CLK3-220ENST00000567992 SNAPC2Q13487 334 aa11.76□□□□□ -0.53
CLK3-220ENST00000567992 SBK1Q52WX2 424 aa11.76□□□□□ -0.53
CLK3-220ENST00000567992 PRRT2Q7Z6L0 340 aaPredicted RBP11.76□□□□□ -0.53
CLK3-220ENST00000567992 RILPL2Q969X0 211 aa11.76□□□□□ -0.53
CLK3-220ENST00000567992 DYNLL2Q96FJ2 89 aa11.76□□□□□ -0.53
CLK3-220ENST00000567992 PRDM10Q9NQV6 1147 aa11.76□□□□□ -0.53
CLK3-220ENST00000567992 HELLSQ9NRZ9 838 aa11.76□□□□□ -0.53
CLK3-220ENST00000567992 ARPP21Q9UBL0 812 aaPredicted RBP11.76□□□□□ -0.53
CLK3-220ENST00000567992 LAMA4Q16363 1823 aa11.76□□□□□ -0.53
CLK3-220ENST00000567992 HTTP42858 3142 aa11.75□□□□□ -0.53
CLK3-220ENST00000567992 PATL2C9JE40 543 aaKnown RBP11.75□□□□□ -0.53
CLK3-220ENST00000567992 BTBD19C9JJ37 291 aa11.75□□□□□ -0.53
CLK3-220ENST00000567992 CXCL11O14625 94 aa11.75□□□□□ -0.53
CLK3-220ENST00000567992 ASNSP08243 561 aa11.75□□□□□ -0.53
CLK3-220ENST00000567992 CETPP11597 493 aa11.75□□□□□ -0.53
CLK3-220ENST00000567992 SDSP20132 328 aa11.75□□□□□ -0.53
CLK3-220ENST00000567992 GUCY1A2P33402 732 aa11.75□□□□□ -0.53
CLK3-220ENST00000567992 VPS53Q5VIR6 699 aa11.75□□□□□ -0.53
CLK3-220ENST00000567992 GPAT2Q6NUI2 795 aa11.75□□□□□ -0.53
CLK3-220ENST00000567992 C16orf86Q6ZW13 317 aa11.75□□□□□ -0.53
CLK3-220ENST00000567992 ZNF589Q86UQ0 364 aaPredicted RBP11.75□□□□□ -0.53
CLK3-220ENST00000567992 IFNL3Q8IZI9 196 aa11.75□□□□□ -0.53
CLK3-220ENST00000567992 TRIM34Q9BYJ4 488 aa11.75□□□□□ -0.53
CLK3-220ENST00000567992 GINM1Q9NU53 330 aa11.75□□□□□ -0.53
CLK3-220ENST00000567992 TAOK2Q9UL54 1235 aa11.75□□□□□ -0.53
CLK3-220ENST00000567992 TRIM75PA6NK02 468 aa11.74□□□□□ -0.53
CLK3-220ENST00000567992 USP17L5A8MUK1 530 aa11.74□□□□□ -0.53
CLK3-220ENST00000567992 TBC1D8O95759 1140 aa11.74□□□□□ -0.53
CLK3-220ENST00000567992 ALDH1A1P00352 501 aa11.74□□□□□ -0.53
CLK3-220ENST00000567992 GH2P01242 217 aa11.74□□□□□ -0.53
CLK3-220ENST00000567992 CRHR2Q13324 411 aa11.74□□□□□ -0.53
CLK3-220ENST00000567992 DGKZQ13574 1117 aa11.74□□□□□ -0.53
CLK3-220ENST00000567992 CERKLQ49MI3 558 aaPredicted RBP11.74□□□□□ -0.53
CLK3-220ENST00000567992 MCMDC2Q4G0Z9 681 aa11.74□□□□□ -0.53
CLK3-220ENST00000567992 COL13A1Q5TAT6 717 aaPredicted RBP11.74□□□□□ -0.53
CLK3-220ENST00000567992 ZNF280CQ8ND82 737 aa11.74□□□□□ -0.53
CLK3-220ENST00000567992 WDR18Q9BV38 432 aa11.74□□□□□ -0.53
CLK3-220ENST00000567992 IL25Q9H293 177 aa11.74□□□□□ -0.53
CLK3-220ENST00000567992 ZCCHC17Q9NP64 241 aaKnown RBP11.74□□□□□ -0.53
CLK3-220ENST00000567992 SWAP70Q9UH65 585 aa11.74□□□□□ -0.53
CLK3-220ENST00000567992 ADGRA2Q96PE1 1338 aa11.74□□□□□ -0.53
CLK3-220ENST00000567992 ZSWIM8A7E2V4 1837 aa11.73□□□□□ -0.53
CLK3-220ENST00000567992 NEFLP07196 543 aa11.73□□□□□ -0.53
CLK3-220ENST00000567992 CDK8P49336 464 aa11.73□□□□□ -0.53
CLK3-220ENST00000567992 SPP2Q13103 211 aa11.73□□□□□ -0.53
CLK3-220ENST00000567992 ABCB5Q2M3G0 1257 aa11.73□□□□□ -0.53
CLK3-220ENST00000567992 NOM1Q5C9Z4 860 aaKnown RBP11.73□□□□□ -0.53
CLK3-220ENST00000567992 CCDC171Q6TFL3 1326 aa11.73□□□□□ -0.53
CLK3-220ENST00000567992 ANKRD23Q86SG2 305 aa11.73□□□□□ -0.53
CLK3-220ENST00000567992 DDRGK1Q96HY6 314 aa11.73□□□□□ -0.53
CLK3-220ENST00000567992 CCDC136Q96JN2 1154 aa11.73□□□□□ -0.53
CLK3-220ENST00000567992 TBC1D2Q9BYX2 928 aa11.73□□□□□ -0.53
CLK3-220ENST00000567992 ZMYM6O95789 1325 aa11.72□□□□□ -0.53
CLK3-220ENST00000567992 GPR25O00155 361 aa11.72□□□□□ -0.53
CLK3-220ENST00000567992 AKR1B1P15121 316 aa11.72□□□□□ -0.53
CLK3-220ENST00000567992 TDO2P48775 406 aa11.72□□□□□ -0.53
CLK3-220ENST00000567992 MTMR2Q13614 643 aa11.72□□□□□ -0.53
CLK3-220ENST00000567992 SH3D19Q5HYK7 790 aa11.72□□□□□ -0.53
CLK3-220ENST00000567992 TREML2Q5T2D2 321 aa11.72□□□□□ -0.53
CLK3-220ENST00000567992 OTUD7BQ6GQQ9 843 aa11.72□□□□□ -0.53
CLK3-220ENST00000567992 AMOTL1Q8IY63 956 aa11.72□□□□□ -0.53
CLK3-220ENST00000567992 AS3MTQ9HBK9 375 aa11.72□□□□□ -0.53
CLK3-220ENST00000567992 MINDY4BA8MYZ0 360 aa11.71□□□□□ -0.53
CLK3-220ENST00000567992 PDHXO00330 501 aa11.71□□□□□ -0.53
CLK3-220ENST00000567992 APPP05067 770 aa11.71□□□□□ -0.53
CLK3-220ENST00000567992 HSPD1P10809 573 aaKnown RBP11.71□□□□□ -0.53
CLK3-220ENST00000567992 RASA1P20936 1047 aa11.71□□□□□ -0.53
CLK3-220ENST00000567992 HMGCS2P54868 508 aa11.71□□□□□ -0.53
CLK3-220ENST00000567992 BACE1P56817 501 aa11.71□□□□□ -0.53
CLK3-220ENST00000567992 CAP1Q01518 475 aa11.71□□□□□ -0.53
CLK3-220ENST00000567992 SEPT2Q15019 361 aa11.71□□□□□ -0.53
CLK3-220ENST00000567992 TAF1CQ15572 869 aaPredicted RBP11.71□□□□□ -0.53
CLK3-220ENST00000567992 ALX1Q15699 326 aa11.71□□□□□ -0.53
CLK3-220ENST00000567992 CWC27Q6UX04 472 aaKnown RBP11.71□□□□□ -0.53
CLK3-220ENST00000567992 CLEC10AQ8IUN9 316 aa11.71□□□□□ -0.53
CLK3-220ENST00000567992 PROCA1Q8NCQ7 364 aaPredicted RBP11.71□□□□□ -0.53
CLK3-220ENST00000567992 ACER1Q8TDN7 264 aa11.71□□□□□ -0.53
CLK3-220ENST00000567992 ZNF296Q8WUU4 475 aaPredicted RBP11.71□□□□□ -0.53
CLK3-220ENST00000567992 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.71□□□□□ -0.53
CLK3-220ENST00000567992 NACAP1Q9BZK3 213 aa11.71□□□□□ -0.53
CLK3-220ENST00000567992 NAPBQ9H115 298 aa11.71□□□□□ -0.53
CLK3-220ENST00000567992 DIAPH3Q9NSV4 1193 aa11.71□□□□□ -0.53
CLK3-220ENST00000567992 TACC3Q9Y6A5 838 aa11.71□□□□□ -0.53
CLK3-220ENST00000567992 PARP14Q460N5 1801 aa11.7□□□□□ -0.54
CLK3-220ENST00000567992 A0A1W2PRG0 241 aa11.7□□□□□ -0.54
CLK3-220ENST00000567992 HIP1O00291 1037 aa11.7□□□□□ -0.54
CLK3-220ENST00000567992 PPARAQ07869 468 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms