RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 LRRC10BA6NIK2 292 aa7.57□□□□□ -1.2
VPS13C-210ENST00000561258 RACK1P63244 317 aaKnown RBP7.57□□□□□ -1.2
VPS13C-210ENST00000561258 ZNF394Q53GI3 561 aa7.57□□□□□ -1.2
VPS13C-210ENST00000561258 PPM1JQ5JR12 505 aa7.57□□□□□ -1.2
VPS13C-210ENST00000561258 UBE3DQ7Z6J8 389 aa7.57□□□□□ -1.2
VPS13C-210ENST00000561258 FLAD1Q8NFF5 587 aa7.57□□□□□ -1.2
VPS13C-210ENST00000561258 SPATA32Q96LK8 384 aa7.57□□□□□ -1.2
VPS13C-210ENST00000561258 AKAP2Q9Y2D5 859 aa7.57□□□□□ -1.2
VPS13C-210ENST00000561258 USP31Q70CQ4 1352 aa7.57□□□□□ -1.2
VPS13C-210ENST00000561258 ZNF503-AS2A6NEH8 195 aa7.56□□□□□ -1.2
VPS13C-210ENST00000561258 HSP90B1P14625 803 aaKnown RBP7.56□□□□□ -1.2
VPS13C-210ENST00000561258 ZP2Q05996 745 aa7.56□□□□□ -1.2
VPS13C-210ENST00000561258 IKZF1Q13422 519 aa7.56□□□□□ -1.2
VPS13C-210ENST00000561258 GNL2Q13823 731 aaKnown RBP7.56□□□□□ -1.2
VPS13C-210ENST00000561258 MLANAQ16655 118 aa7.56□□□□□ -1.2
VPS13C-210ENST00000561258 ZSWIM9Q86XI8 627 aa7.56□□□□□ -1.2
VPS13C-210ENST00000561258 SPACA3Q8IXA5 215 aa7.56□□□□□ -1.2
VPS13C-210ENST00000561258 FAM84AQ96KN4 292 aa7.56□□□□□ -1.2
VPS13C-210ENST00000561258 PPP4R2Q9NY27 417 aa7.56□□□□□ -1.2
VPS13C-210ENST00000561258 PCDHGB7Q9Y5F8 929 aa7.56□□□□□ -1.2
VPS13C-210ENST00000561258 SMARCA5O60264 1052 aaPredicted RBP7.55□□□□□ -1.2
VPS13C-210ENST00000561258 HMGB1P09429 215 aaKnown RBP7.55□□□□□ -1.2
VPS13C-210ENST00000561258 NME2P22392 152 aa7.55□□□□□ -1.2
VPS13C-210ENST00000561258 ZNF252P-AS1Q0IIN9 211 aa7.55□□□□□ -1.2
VPS13C-210ENST00000561258 NKPD1Q17RQ9 610 aa7.55□□□□□ -1.2
VPS13C-210ENST00000561258 DPH6Q7L8W6 267 aa7.55□□□□□ -1.2
VPS13C-210ENST00000561258 HS2ST1Q7LGA3 356 aa7.55□□□□□ -1.2
VPS13C-210ENST00000561258 USP48Q86UV5 1035 aa7.55□□□□□ -1.2
VPS13C-210ENST00000561258 ZNF654Q8IZM8 581 aa7.55□□□□□ -1.2
VPS13C-210ENST00000561258 ARMC5Q96C12 935 aa7.55□□□□□ -1.2
VPS13C-210ENST00000561258 ACSBG1Q96GR2 724 aa7.55□□□□□ -1.2
VPS13C-210ENST00000561258 CBX8Q9HC52 389 aa7.55□□□□□ -1.2
VPS13C-210ENST00000561258 PRDM10Q9NQV6 1147 aa7.55□□□□□ -1.2
VPS13C-210ENST00000561258 NTF4P34130 210 aa7.54□□□□□ -1.2
VPS13C-210ENST00000561258 KCNMB1Q16558 191 aa7.54□□□□□ -1.2
VPS13C-210ENST00000561258 MEI1Q5TIA1 1274 aa7.54□□□□□ -1.2
VPS13C-210ENST00000561258 FYB2Q5VWT5 728 aa7.54□□□□□ -1.2
VPS13C-210ENST00000561258 NXPE4Q6UWF7 544 aa7.54□□□□□ -1.2
VPS13C-210ENST00000561258 GRIN3AQ8TCU5 1115 aa7.54□□□□□ -1.2
VPS13C-210ENST00000561258 ASB11Q8WXH4 323 aa7.54□□□□□ -1.2
VPS13C-210ENST00000561258 DHX38Q92620 1227 aaKnown RBP7.54□□□□□ -1.2
VPS13C-210ENST00000561258 LIN37Q96GY3 246 aaPredicted RBP7.54□□□□□ -1.2
VPS13C-210ENST00000561258 DNAJC2Q99543 621 aaKnown RBP7.54□□□□□ -1.2
VPS13C-210ENST00000561258 FAM8A1Q9UBU6 413 aa7.54□□□□□ -1.2
VPS13C-210ENST00000561258 GTF2IRD1Q9UHL9 959 aa7.54□□□□□ -1.2
VPS13C-210ENST00000561258 DCDC2CA8MYV0 355 aa7.53□□□□□ -1.2
VPS13C-210ENST00000561258 IGF2BP3O00425 579 aaKnown RBP eCLIP7.53□□□□□ -1.2
VPS13C-210ENST00000561258 XRCC5P13010 732 aaKnown RBP7.53□□□□□ -1.2
VPS13C-210ENST00000561258 ATP2B1P20020 1258 aa7.53□□□□□ -1.2
VPS13C-210ENST00000561258 CANXP27824 592 aaKnown RBP7.53□□□□□ -1.2
VPS13C-210ENST00000561258 ST13P50502 369 aaKnown RBP7.53□□□□□ -1.2
VPS13C-210ENST00000561258 C12orf40Q86WS4 652 aa7.53□□□□□ -1.2
VPS13C-210ENST00000561258 CILP2Q8IUL8 1156 aa7.53□□□□□ -1.2
VPS13C-210ENST00000561258 EMILIN2Q9BXX0 1053 aa7.53□□□□□ -1.2
VPS13C-210ENST00000561258 SRCIN1Q9C0H9 1055 aa7.53□□□□□ -1.2
VPS13C-210ENST00000561258 CACNA2D2Q9NY47 1150 aa7.53□□□□□ -1.2
VPS13C-210ENST00000561258 CTNND2Q9UQB3 1225 aa7.53□□□□□ -1.2
VPS13C-210ENST00000561258 INPP5FQ9Y2H2 1132 aa7.53□□□□□ -1.2
VPS13C-210ENST00000561258 CADPSQ9ULU8 1353 aa7.52□□□□□ -1.21
VPS13C-210ENST00000561258 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.52□□□□□ -1.21
VPS13C-210ENST00000561258 USP17L7P0C7H9 530 aa7.52□□□□□ -1.21
VPS13C-210ENST00000561258 DNAJA1P31689 397 aaKnown RBP7.52□□□□□ -1.21
VPS13C-210ENST00000561258 TAF1CQ15572 869 aaPredicted RBP7.52□□□□□ -1.21
VPS13C-210ENST00000561258 KRTAP4-2Q9BYR5 136 aa7.52□□□□□ -1.21
VPS13C-210ENST00000561258 FAM53CQ9NYF3 392 aa7.52□□□□□ -1.21
VPS13C-210ENST00000561258 GGT7Q9UJ14 662 aa7.52□□□□□ -1.21
VPS13C-210ENST00000561258 EOMESO95936 686 aa7.51□□□□□ -1.21
VPS13C-210ENST00000561258 BMP6P22004 513 aa7.51□□□□□ -1.21
VPS13C-210ENST00000561258 ARID5AQ03989 594 aa7.51□□□□□ -1.21
VPS13C-210ENST00000561258 GIMAP6Q6P9H5 292 aa7.51□□□□□ -1.21
VPS13C-210ENST00000561258 ERMP1Q7Z2K6 904 aa7.51□□□□□ -1.21
VPS13C-210ENST00000561258 LNPKQ9C0E8 428 aa7.51□□□□□ -1.21
VPS13C-210ENST00000561258 PICK1Q9NRD5 415 aa7.51□□□□□ -1.21
VPS13C-210ENST00000561258 PITPNM2Q9BZ72 1349 aa7.51□□□□□ -1.21
VPS13C-210ENST00000561258 PAGE1O75459 146 aa7.5□□□□□ -1.21
VPS13C-210ENST00000561258 GTF2F1P35269 517 aaKnown RBP eCLIP7.5□□□□□ -1.21
VPS13C-210ENST00000561258 GJA8P48165 433 aa7.5□□□□□ -1.21
VPS13C-210ENST00000561258 TPTE2Q6XPS3 522 aa7.5□□□□□ -1.21
VPS13C-210ENST00000561258 C3orf58Q8NDZ4 430 aa7.5□□□□□ -1.21
VPS13C-210ENST00000561258 NECAB3Q96P71 396 aaPredicted RBP7.5□□□□□ -1.21
VPS13C-210ENST00000561258 GNAT3A8MTJ3 354 aa7.49□□□□□ -1.21
VPS13C-210ENST00000561258 KRTAP9-7A8MTY7 169 aa7.49□□□□□ -1.21
VPS13C-210ENST00000561258 RAP1GAPP47736 663 aa7.49□□□□□ -1.21
VPS13C-210ENST00000561258 RING1Q06587 406 aa7.49□□□□□ -1.21
VPS13C-210ENST00000561258 ZBTB37Q5TC79 503 aa7.49□□□□□ -1.21
VPS13C-210ENST00000561258 PRR23BQ6ZRT6 265 aa7.49□□□□□ -1.21
VPS13C-210ENST00000561258 BHLHE22Q8NFJ8 381 aaPredicted RBP7.49□□□□□ -1.21
VPS13C-210ENST00000561258 ENC1O14682 589 aa7.48□□□□□ -1.21
VPS13C-210ENST00000561258 FBXO24O75426 580 aa7.48□□□□□ -1.21
VPS13C-210ENST00000561258 FGRP09769 529 aa7.48□□□□□ -1.21
VPS13C-210ENST00000561258 CFPP27918 469 aa7.48□□□□□ -1.21
VPS13C-210ENST00000561258 AFMP43652 599 aa7.48□□□□□ -1.21
VPS13C-210ENST00000561258 CLCN7P51798 805 aa7.48□□□□□ -1.21
VPS13C-210ENST00000561258 RBL2Q08999 1139 aa7.48□□□□□ -1.21
VPS13C-210ENST00000561258 RASIP1Q5U651 963 aa7.48□□□□□ -1.21
VPS13C-210ENST00000561258 MCF2L2Q86YR7 1114 aa7.48□□□□□ -1.21
VPS13C-210ENST00000561258 CARS2Q9HA77 564 aaKnown RBP7.48□□□□□ -1.21
VPS13C-210ENST00000561258 CNTNAP4Q9C0A0 1308 aa7.48□□□□□ -1.21
VPS13C-210ENST00000561258 PRR33A8MZF0 331 aa7.47□□□□□ -1.21
VPS13C-210ENST00000561258 RBAK-RBAKDNI3L0D1 243 aa7.47□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms