RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 AEBP2Q6ZN18 517 aaPredicted RBP29.23■■■□□ 2.27
VPS13C-210ENST00000561258 CHIC1Q5VXU3 224 aa27.7■■■□□ 2.02
VPS13C-210ENST00000561258 SENP3Q9H4L4 574 aaPredicted RBP24.85■■□□□ 1.57
VPS13C-210ENST00000561258 PHF23Q9BUL5 403 aaPredicted RBP24.58■■□□□ 1.53
VPS13C-210ENST00000561258 FOXD1Q16676 465 aa23.23■■□□□ 1.31
VPS13C-210ENST00000561258 PLPPR3Q6T4P5 718 aa22.09■■□□□ 1.13
VPS13C-210ENST00000561258 PPP6R1Q9UPN7 881 aa21.74■■□□□ 1.07
VPS13C-210ENST00000561258 PIAS4Q8N2W9 510 aaPredicted RBP21.69■■□□□ 1.06
VPS13C-210ENST00000561258 MSH5O43196 834 aa21.67■■□□□ 1.06
VPS13C-210ENST00000561258 ADRA2BP18089 450 aa21.67■■□□□ 1.06
VPS13C-210ENST00000561258 POTEDQ86YR6 584 aa21.25■□□□□ 0.99
VPS13C-210ENST00000561258 MAPK8IP2Q13387 824 aaPredicted RBP19.93■□□□□ 0.78
VPS13C-210ENST00000561258 DMRT2Q9Y5R5 561 aa19.72■□□□□ 0.75
VPS13C-210ENST00000561258 SCAF1Q9H7N4 1312 aaKnown RBP19.72■□□□□ 0.75
VPS13C-210ENST00000561258 PPP4R3CPQ6ZMV5 832 aa19.4■□□□□ 0.7
VPS13C-210ENST00000561258 CNKSR2Q8WXI2 1034 aa19.01■□□□□ 0.63
VPS13C-210ENST00000561258 HOXD11P31277 338 aaPredicted RBP18.99■□□□□ 0.63
VPS13C-210ENST00000561258 DCAF8L1A6NGE4 600 aa18.97■□□□□ 0.63
VPS13C-210ENST00000561258 RNF216Q9NWF9 866 aaPredicted RBP18.83■□□□□ 0.6
VPS13C-210ENST00000561258 CACNB1Q02641 598 aaPredicted RBP18.66■□□□□ 0.58
VPS13C-210ENST00000561258 NCBP3Q53F19 620 aaKnown RBP18.59■□□□□ 0.57
VPS13C-210ENST00000561258 RNF39Q9H2S5 420 aa18.52■□□□□ 0.56
VPS13C-210ENST00000561258 NPM3O75607 178 aaKnown RBP18.39■□□□□ 0.53
VPS13C-210ENST00000561258 DNAJC5BQ9UF47 199 aa18.26■□□□□ 0.51
VPS13C-210ENST00000561258 C1QBPQ07021 282 aaKnown RBP18.22■□□□□ 0.51
VPS13C-210ENST00000561258 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.11■□□□□ 0.49
VPS13C-210ENST00000561258 KCNA4P22459 653 aa18.05■□□□□ 0.48
VPS13C-210ENST00000561258 U3KPZ7 1027 aaPredicted RBP17.74■□□□□ 0.43
VPS13C-210ENST00000561258 SLC4A2P04920 1241 aa17.58■□□□□ 0.4
VPS13C-210ENST00000561258 SPINK5Q9NQ38 1064 aaPredicted RBP17.52■□□□□ 0.4
VPS13C-210ENST00000561258 CAPN15O75808 1086 aa17.46■□□□□ 0.39
VPS13C-210ENST00000561258 DSG3P32926 999 aa17.36■□□□□ 0.37
VPS13C-210ENST00000561258 TRHP20396 242 aaPredicted RBP17.2■□□□□ 0.34
VPS13C-210ENST00000561258 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.15■□□□□ 0.34
VPS13C-210ENST00000561258 HNRNPUL2Q1KMD3 747 aaKnown RBP17.15■□□□□ 0.34
VPS13C-210ENST00000561258 APLP2Q06481 763 aa17.14■□□□□ 0.33
VPS13C-210ENST00000561258 ABCB7O75027 752 aa17.09■□□□□ 0.33
VPS13C-210ENST00000561258 ZNF219Q9P2Y4 722 aaPredicted RBP17.09■□□□□ 0.33
VPS13C-210ENST00000561258 SAMD1Q6SPF0 538 aaPredicted RBP17.08■□□□□ 0.32
VPS13C-210ENST00000561258 SLC4A1APQ9BWU0 796 aaKnown RBP17.01■□□□□ 0.31
VPS13C-210ENST00000561258 MYCNP04198 464 aaPredicted RBP16.97■□□□□ 0.31
VPS13C-210ENST00000561258 FOXD4L1Q9NU39 408 aa16.8■□□□□ 0.28
VPS13C-210ENST00000561258 POLA2Q14181 598 aa16.72■□□□□ 0.27
VPS13C-210ENST00000561258 ATF5Q9Y2D1 282 aaPredicted RBP16.67■□□□□ 0.26
VPS13C-210ENST00000561258 POTEHQ6S545 545 aa16.63■□□□□ 0.25
VPS13C-210ENST00000561258 ZBTB22O15209 634 aa16.61■□□□□ 0.25
VPS13C-210ENST00000561258 RBM42Q9BTD8 480 aaKnown RBP16.5■□□□□ 0.23
VPS13C-210ENST00000561258 ZBTB12Q9Y330 459 aaPredicted RBP16.29■□□□□ 0.2
VPS13C-210ENST00000561258 ATXN8OSP0DMR3 200 aa16.23■□□□□ 0.19
VPS13C-210ENST00000561258 CHRDL2Q6WN34 429 aa16.2■□□□□ 0.18
VPS13C-210ENST00000561258 OSCARQ8IYS5 282 aa16.19■□□□□ 0.18
VPS13C-210ENST00000561258 AKT1S1Q96B36 256 aa16.14■□□□□ 0.17
VPS13C-210ENST00000561258 REM2Q8IYK8 340 aaPredicted RBP16.02■□□□□ 0.16
VPS13C-210ENST00000561258 FBLN2P98095 1184 aa15.93■□□□□ 0.14
VPS13C-210ENST00000561258 MKRN4PQ13434 485 aaPredicted RBP15.87■□□□□ 0.13
VPS13C-210ENST00000561258 PITPNM1O00562 1244 aa15.86■□□□□ 0.13
VPS13C-210ENST00000561258 SPDYE2BA6NHP3 402 aa15.82■□□□□ 0.12
VPS13C-210ENST00000561258 SPDYE6P0CI01 402 aa15.82■□□□□ 0.12
VPS13C-210ENST00000561258 SPDYE2Q495Y8 402 aa15.82■□□□□ 0.12
VPS13C-210ENST00000561258 PIP4P2Q8N4L2 257 aa15.82■□□□□ 0.12
VPS13C-210ENST00000561258 CSRNP3Q8WYN3 585 aa15.82■□□□□ 0.12
VPS13C-210ENST00000561258 FXR2P51116 673 aaKnown RBP eCLIP15.71■□□□□ 0.11
VPS13C-210ENST00000561258 ZNF692Q9BU19 519 aaPredicted RBP15.67■□□□□ 0.1
VPS13C-210ENST00000561258 EHMT2Q96KQ7 1210 aa15.63■□□□□ 0.09
VPS13C-210ENST00000561258 SSUH2Q9Y2M2 353 aa15.63■□□□□ 0.09
VPS13C-210ENST00000561258 CLEC11AQ9Y240 323 aa15.59■□□□□ 0.09
VPS13C-210ENST00000561258 SP7Q8TDD2 431 aaPredicted RBP15.57■□□□□ 0.08
VPS13C-210ENST00000561258 SPDYE1Q8NFV5 336 aaPredicted RBP15.56■□□□□ 0.08
VPS13C-210ENST00000561258 HAX1O00165 279 aa15.55■□□□□ 0.08
VPS13C-210ENST00000561258 PRKAR2AP13861 404 aaKnown RBP15.45■□□□□ 0.06
VPS13C-210ENST00000561258 PABPN1Q86U42 306 aaKnown RBP eCLIP15.45■□□□□ 0.06
VPS13C-210ENST00000561258 EVX2Q03828 476 aa15.4■□□□□ 0.06
VPS13C-210ENST00000561258 CHADLQ6NUI6 762 aa15.32■□□□□ 0.04
VPS13C-210ENST00000561258 PRR29P0C7W0 189 aa15.3■□□□□ 0.04
VPS13C-210ENST00000561258 C19orf67A6NJJ6 358 aa15.2■□□□□ 0.02
VPS13C-210ENST00000561258 SPDYE4A6NLX3 237 aa15.09■□□□□ 0.01
VPS13C-210ENST00000561258 FARP1Q9Y4F1 1045 aaPredicted RBP15.04■□□□□ -0
VPS13C-210ENST00000561258 GABBR2O75899 941 aa15.01□□□□□ -0.01
VPS13C-210ENST00000561258 CD44P16070 742 aaKnown RBP14.96□□□□□ -0.01
VPS13C-210ENST00000561258 STAG3Q9UJ98 1225 aa14.96□□□□□ -0.01
VPS13C-210ENST00000561258 CREBZFQ9NS37 354 aa14.93□□□□□ -0.02
VPS13C-210ENST00000561258 ZRANB1Q9UGI0 708 aa14.76□□□□□ -0.05
VPS13C-210ENST00000561258 POTEIP0CG38 1075 aa14.72□□□□□ -0.05
VPS13C-210ENST00000561258 ZNF579Q8NAF0 562 aaKnown RBP14.7□□□□□ -0.06
VPS13C-210ENST00000561258 PROM2Q8N271 834 aa14.69□□□□□ -0.06
VPS13C-210ENST00000561258 MNX1P50219 401 aaPredicted RBP14.67□□□□□ -0.06
VPS13C-210ENST00000561258 CLCN6P51797 869 aa14.65□□□□□ -0.06
VPS13C-210ENST00000561258 LHX8Q68G74 356 aa14.63□□□□□ -0.07
VPS13C-210ENST00000561258 NPM1P06748 294 aaKnown RBP eCLIP14.61□□□□□ -0.07
VPS13C-210ENST00000561258 PAK3O75914 559 aaPredicted RBP14.58□□□□□ -0.08
VPS13C-210ENST00000561258 DCBLD2Q96PD2 775 aa14.58□□□□□ -0.08
VPS13C-210ENST00000561258 GALR2O43603 387 aaPredicted RBP14.57□□□□□ -0.08
VPS13C-210ENST00000561258 PHF12Q96QT6 1004 aa14.57□□□□□ -0.08
VPS13C-210ENST00000561258 TSPYL2Q9H2G4 693 aaPredicted RBP14.42□□□□□ -0.1
VPS13C-210ENST00000561258 MIER1Q8N108 512 aa14.4□□□□□ -0.1
VPS13C-210ENST00000561258 MS4A3Q96HJ5 214 aa14.36□□□□□ -0.11
VPS13C-210ENST00000561258 FKBP8Q14318 412 aa14.35□□□□□ -0.11
VPS13C-210ENST00000561258 PLEKHG5O94827 1062 aa14.33□□□□□ -0.12
VPS13C-210ENST00000561258 CCDC61Q9Y6R9 512 aa14.32□□□□□ -0.12
VPS13C-210ENST00000561258 PELP1Q8IZL8 1130 aaKnown RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 158.5 ms