RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 UBE2HP62256 183 aa14.77□□□□□ -0.04
USP3-213ENST00000559711 SSRP1Q08945 709 aaKnown RBP14.77□□□□□ -0.04
USP3-213ENST00000559711 SLC4A8Q2Y0W8 1093 aa14.77□□□□□ -0.04
USP3-213ENST00000559711 ATL3Q6DD88 541 aa14.77□□□□□ -0.04
USP3-213ENST00000559711 NBPF11Q86T75 865 aa14.77□□□□□ -0.04
USP3-213ENST00000559711 ZNF444Q8N0Y2 327 aaPredicted RBP14.77□□□□□ -0.04
USP3-213ENST00000559711 CRACR2BQ8N4Y2 399 aaPredicted RBP14.77□□□□□ -0.04
USP3-213ENST00000559711 ALG1Q9BT22 464 aa14.77□□□□□ -0.04
USP3-213ENST00000559711 IL17RBQ9NRM6 502 aa14.77□□□□□ -0.04
USP3-213ENST00000559711 PIM2Q9P1W9 311 aa14.77□□□□□ -0.04
USP3-213ENST00000559711 SERPINA10Q9UK55 444 aa14.77□□□□□ -0.04
USP3-213ENST00000559711 NMT2O60551 498 aa14.77□□□□□ -0.05
USP3-213ENST00000559711 FOSBP53539 338 aa14.77□□□□□ -0.05
USP3-213ENST00000559711 GUCY1B3Q02153 619 aa14.77□□□□□ -0.05
USP3-213ENST00000559711 KIAA0825Q8IV33 1275 aa14.77□□□□□ -0.05
USP3-213ENST00000559711 NUP133Q8WUM0 1156 aa14.77□□□□□ -0.05
USP3-213ENST00000559711 DDX4Q9NQI0 724 aaKnown RBP14.77□□□□□ -0.05
USP3-213ENST00000559711 RBM28Q9NW13 759 aaKnown RBP14.77□□□□□ -0.05
USP3-213ENST00000559711 LAMB1P07942 1786 aa14.76□□□□□ -0.05
USP3-213ENST00000559711 DLEC1Q9Y238 1755 aa14.76□□□□□ -0.05
USP3-213ENST00000559711 GABPAQ06546 454 aa14.76□□□□□ -0.05
USP3-213ENST00000559711 OTUD7BQ6GQQ9 843 aa14.76□□□□□ -0.05
USP3-213ENST00000559711 CAVIN1Q6NZI2 390 aaKnown RBP14.76□□□□□ -0.05
USP3-213ENST00000559711 ILDR1Q86SU0 546 aaPredicted RBP14.76□□□□□ -0.05
USP3-213ENST00000559711 TTC6Q86TZ1 520 aa14.76□□□□□ -0.05
USP3-213ENST00000559711 SLC44A5Q8NCS7 719 aa14.76□□□□□ -0.05
USP3-213ENST00000559711 WASF1Q92558 559 aa14.76□□□□□ -0.05
USP3-213ENST00000559711 SGIP1Q9BQI5 828 aa14.76□□□□□ -0.05
USP3-213ENST00000559711 SLC26A6Q9BXS9 759 aa14.76□□□□□ -0.05
USP3-213ENST00000559711 CFAP45Q9UL16 551 aa14.76□□□□□ -0.05
USP3-213ENST00000559711 NPM3O75607 178 aaKnown RBP14.75□□□□□ -0.05
USP3-213ENST00000559711 TSPY3P0CV98 308 aa14.75□□□□□ -0.05
USP3-213ENST00000559711 TSPY8P0CW00 308 aa14.75□□□□□ -0.05
USP3-213ENST00000559711 FUT2Q10981 343 aa14.75□□□□□ -0.05
USP3-213ENST00000559711 R3HDM1Q15032 1099 aaKnown RBP14.75□□□□□ -0.05
USP3-213ENST00000559711 TRIM22Q8IYM9 498 aa14.75□□□□□ -0.05
USP3-213ENST00000559711 LEO1Q8WVC0 666 aaPredicted RBP14.75□□□□□ -0.05
USP3-213ENST00000559711 MAP3K14Q99558 947 aa14.75□□□□□ -0.05
USP3-213ENST00000559711 TFIP11Q9UBB9 837 aaKnown RBP14.75□□□□□ -0.05
USP3-213ENST00000559711 KIF13BQ9NQT8 1826 aa14.75□□□□□ -0.05
USP3-213ENST00000559711 FSD2A1L4K1 749 aa14.74□□□□□ -0.05
USP3-213ENST00000559711 DEXIO95424 95 aa14.74□□□□□ -0.05
USP3-213ENST00000559711 BRAPQ7Z569 592 aa14.74□□□□□ -0.05
USP3-213ENST00000559711 NEDD1Q8NHV4 660 aa14.74□□□□□ -0.05
USP3-213ENST00000559711 UPF1Q92900 1129 aaKnown RBP eCLIP14.74□□□□□ -0.05
USP3-213ENST00000559711 AIFM3Q96NN9 605 aa14.74□□□□□ -0.05
USP3-213ENST00000559711 IDI2Q9BXS1 227 aa14.74□□□□□ -0.05
USP3-213ENST00000559711 RNF26Q9BY78 433 aaPredicted RBP14.74□□□□□ -0.05
USP3-213ENST00000559711 OSBPL5Q9H0X9 879 aaPredicted RBP14.74□□□□□ -0.05
USP3-213ENST00000559711 GJB4Q9NTQ9 266 aa14.74□□□□□ -0.05
USP3-213ENST00000559711 TMEM63CQ9P1W3 806 aa14.74□□□□□ -0.05
USP3-213ENST00000559711 ISY1Q9ULR0 285 aaKnown RBP14.74□□□□□ -0.05
USP3-213ENST00000559711 DDX60LQ5H9U9 1706 aaKnown RBP14.74□□□□□ -0.05
USP3-213ENST00000559711 MYO3BQ8WXR4 1341 aa14.74□□□□□ -0.05
USP3-213ENST00000559711 VIL1P09327 827 aaKnown RBP14.74□□□□□ -0.05
USP3-213ENST00000559711 NOVP48745 357 aa14.74□□□□□ -0.05
USP3-213ENST00000559711 KIF23Q02241 960 aaPredicted RBP14.74□□□□□ -0.05
USP3-213ENST00000559711 PICALMQ13492 652 aa14.74□□□□□ -0.05
USP3-213ENST00000559711 DALRD3Q5D0E6 543 aaKnown RBP14.74□□□□□ -0.05
USP3-213ENST00000559711 KRT40Q6A162 431 aa14.74□□□□□ -0.05
USP3-213ENST00000559711 LARGE2Q8N3Y3 721 aa14.74□□□□□ -0.05
USP3-213ENST00000559711 SPATA32Q96LK8 384 aa14.74□□□□□ -0.05
USP3-213ENST00000559711 ZNF396Q96N95 335 aaPredicted RBP14.74□□□□□ -0.05
USP3-213ENST00000559711 ZNF277Q9NRM2 450 aaPredicted RBP14.74□□□□□ -0.05
USP3-213ENST00000559711 RCOR1Q9UKL0 485 aa14.74□□□□□ -0.05
USP3-213ENST00000559711 CD2APQ9Y5K6 639 aa14.74□□□□□ -0.05
USP3-213ENST00000559711 NAV1Q8NEY1 1877 aa14.73□□□□□ -0.05
USP3-213ENST00000559711 GUCY1A2P33402 732 aa14.73□□□□□ -0.05
USP3-213ENST00000559711 ZNF445P59923 1031 aa14.73□□□□□ -0.05
USP3-213ENST00000559711 ZSCAN23Q3MJ62 389 aa14.73□□□□□ -0.05
USP3-213ENST00000559711 RSBN1LQ6PCB5 846 aaPredicted RBP14.73□□□□□ -0.05
USP3-213ENST00000559711 TMTC3Q6ZXV5 915 aa14.73□□□□□ -0.05
USP3-213ENST00000559711 GMLQ99445 158 aa14.73□□□□□ -0.05
USP3-213ENST00000559711 KAT14Q9H8E8 782 aa14.73□□□□□ -0.05
USP3-213ENST00000559711 RBM27Q9P2N5 1060 aaKnown RBP14.73□□□□□ -0.05
USP3-213ENST00000559711 SCN9AQ15858 1988 aa14.72□□□□□ -0.05
USP3-213ENST00000559711 UBE2Q2LH0YL09 131 aa14.72□□□□□ -0.05
USP3-213ENST00000559711 PRPF3O43395 683 aaKnown RBP14.72□□□□□ -0.05
USP3-213ENST00000559711 NFIAQ12857 509 aa14.72□□□□□ -0.05
USP3-213ENST00000559711 TRIM29Q14134 588 aa14.72□□□□□ -0.05
USP3-213ENST00000559711 CMTR1Q8N1G2 835 aaKnown RBP14.72□□□□□ -0.05
USP3-213ENST00000559711 PNMA1Q8ND90 353 aa14.72□□□□□ -0.05
USP3-213ENST00000559711 CTCFLQ8NI51 663 aaPredicted RBP14.72□□□□□ -0.05
USP3-213ENST00000559711 EHD4Q9H223 541 aa14.72□□□□□ -0.05
USP3-213ENST00000559711 SWAP70Q9UH65 585 aa14.72□□□□□ -0.05
USP3-213ENST00000559711 SERPINB13Q9UIV8 391 aa14.72□□□□□ -0.05
USP3-213ENST00000559711 TAOK2Q9UL54 1235 aa14.72□□□□□ -0.05
USP3-213ENST00000559711 PCDHAC2Q9Y5I4 1007 aa14.72□□□□□ -0.05
USP3-213ENST00000559711 GOLGA6L3A6NEY3 463 aa14.71□□□□□ -0.05
USP3-213ENST00000559711 KIF28PB7ZC32 967 aa14.71□□□□□ -0.05
USP3-213ENST00000559711 PLEKHA8P1O95397 391 aa14.71□□□□□ -0.05
USP3-213ENST00000559711 U2AF2P26368 475 aaKnown RBP eCLIP14.71□□□□□ -0.054e-7■■□□□ 13.3
USP3-213ENST00000559711 RBM5P52756 815 aaKnown RBP eCLIP14.71□□□□□ -0.05
USP3-213ENST00000559711 CCDC82Q8N4S0 544 aa14.71□□□□□ -0.05
USP3-213ENST00000559711 SYAP1Q96A49 352 aaPredicted RBP14.71□□□□□ -0.05
USP3-213ENST00000559711 USP28Q96RU2 1077 aa14.71□□□□□ -0.05
USP3-213ENST00000559711 DHX36Q9H2U1 1008 aaKnown RBP14.71□□□□□ -0.05
USP3-213ENST00000559711 ZNRF3Q9ULT6 936 aa14.71□□□□□ -0.05
USP3-213ENST00000559711 PLIN4Q96Q06 1357 aa14.71□□□□□ -0.05
USP3-213ENST00000559711 PSMD14O00487 310 aa14.71□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 82.4 ms