RNA–Protein interactions for RNA: ENST00000556648.1

TMEM260-211, Transcript of transmembrane protein 260, humanhuman

TSL 2

Gene TMEM260, Length 2,013 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-211ENST00000556648 POLRMTO00411 1230 aaKnown RBP11.7□□□□□ -0.54
TMEM260-211ENST00000556648 ORC4O43929 436 aa11.7□□□□□ -0.54
TMEM260-211ENST00000556648 OFD1O75665 1012 aa11.7□□□□□ -0.54
TMEM260-211ENST00000556648 CMA1P23946 247 aa11.7□□□□□ -0.54
TMEM260-211ENST00000556648 ZNF75DP51815 510 aa11.7□□□□□ -0.54
TMEM260-211ENST00000556648 RCAN1P53805 252 aa11.7□□□□□ -0.54
TMEM260-211ENST00000556648 ST5P78524 1137 aa11.7□□□□□ -0.54
TMEM260-211ENST00000556648 ZNF804AQ7Z570 1209 aa11.7□□□□□ -0.54
TMEM260-211ENST00000556648 DHX40Q8IX18 779 aaKnown RBP11.7□□□□□ -0.54
TMEM260-211ENST00000556648 SDF4Q9BRK5 362 aa11.7□□□□□ -0.54
TMEM260-211ENST00000556648 ATP8A2Q9NTI2 1148 aa11.7□□□□□ -0.54
TMEM260-211ENST00000556648 ARPP21Q9UBL0 812 aaPredicted RBP11.7□□□□□ -0.54
TMEM260-211ENST00000556648 MKRN1Q9UHC7 482 aaKnown RBP11.7□□□□□ -0.54
TMEM260-211ENST00000556648 LTBP1Q14766 1721 aa11.7□□□□□ -0.54
TMEM260-211ENST00000556648 CCDC196A0A1B0GTZ2 297 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 BIN1O00499 593 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 TROAPQ12815 778 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 SBK1Q52WX2 424 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 NOM1Q5C9Z4 860 aaKnown RBP11.69□□□□□ -0.54
TMEM260-211ENST00000556648 EARS2Q5JPH6 523 aaKnown RBP11.69□□□□□ -0.54
TMEM260-211ENST00000556648 SLC27A3Q5K4L6 730 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 SPECC1Q5M775 1068 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 SPTY2D1Q68D10 685 aaPredicted RBP11.69□□□□□ -0.54
TMEM260-211ENST00000556648 CATIPQ7Z7H3 387 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 PLA2G4DQ86XP0 818 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 WDR66Q8TBY9 1149 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 CD209Q9NNX6 404 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 HPSEQ9Y251 543 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 LRRC37AA6NMS7 1700 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 CNTNAP5Q8WYK1 1306 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 PPP6R2O75170 966 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 PTGS1P23219 599 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 USP5P45974 858 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 ZNF827Q17R98 1081 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 DPCR1Q3MIW9 517 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 C15orf52Q6ZUT6 534 aaKnown RBP11.69□□□□□ -0.54
TMEM260-211ENST00000556648 TMTC3Q6ZXV5 915 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 IQCA1Q86XH1 822 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 AOPEPQ8N6M6 819 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 SLC44A5Q8NCS7 719 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 RNF26Q9BY78 433 aaPredicted RBP11.69□□□□□ -0.54
TMEM260-211ENST00000556648 KIAA1468Q9P260 1216 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 POLLQ9UGP5 575 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 SAP30BPQ9UHR5 308 aaKnown RBP11.69□□□□□ -0.54
TMEM260-211ENST00000556648 NRBP1Q9UHY1 535 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 PYCARDQ9ULZ3 195 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 PCDHB6Q9Y5E3 794 aa11.69□□□□□ -0.54
TMEM260-211ENST00000556648 WNT7AO00755 349 aa11.68□□□□□ -0.54
TMEM260-211ENST00000556648 ADAMTS3O15072 1205 aa11.68□□□□□ -0.54
TMEM260-211ENST00000556648 ZBTB22O15209 634 aa11.68□□□□□ -0.54
TMEM260-211ENST00000556648 ATP2B1P20020 1258 aa11.68□□□□□ -0.54
TMEM260-211ENST00000556648 SAFBQ15424 915 aaKnown RBP eCLIP11.68□□□□□ -0.54
TMEM260-211ENST00000556648 RESP18Q5W5W9 173 aa11.68□□□□□ -0.54
TMEM260-211ENST00000556648 RCSD1Q6JBY9 416 aa11.68□□□□□ -0.54
TMEM260-211ENST00000556648 SRBD1Q8N5C6 995 aaKnown RBP11.68□□□□□ -0.54
TMEM260-211ENST00000556648 TGFBRAP1Q8WUH2 860 aa11.68□□□□□ -0.54
TMEM260-211ENST00000556648 PIBF1Q8WXW3 757 aa11.68□□□□□ -0.54
TMEM260-211ENST00000556648 RBM17Q96I25 401 aaKnown RBP11.68□□□□□ -0.54
TMEM260-211ENST00000556648 RTFDC1Q9BY42 306 aaPredicted RBP11.68□□□□□ -0.54
TMEM260-211ENST00000556648 TRIM5Q9C035 493 aa11.68□□□□□ -0.54
TMEM260-211ENST00000556648 ANO10Q9NW15 660 aa11.68□□□□□ -0.54
TMEM260-211ENST00000556648 GGA1Q9UJY5 639 aa11.68□□□□□ -0.54
TMEM260-211ENST00000556648 V9GY48 417 aaPredicted RBP11.68□□□□□ -0.54
TMEM260-211ENST00000556648 DDX60LQ5H9U9 1706 aaKnown RBP11.68□□□□□ -0.54
TMEM260-211ENST00000556648 TSPY2A6NKD2 308 aa11.67□□□□□ -0.54
TMEM260-211ENST00000556648 PRPF3O43395 683 aaKnown RBP11.67□□□□□ -0.54
TMEM260-211ENST00000556648 DDAH1O94760 285 aa11.67□□□□□ -0.54
TMEM260-211ENST00000556648 PCP11498 1178 aaKnown RBP11.67□□□□□ -0.54
TMEM260-211ENST00000556648 ATP2B4P23634 1241 aa11.67□□□□□ -0.54
TMEM260-211ENST00000556648 SYKP43405 635 aa11.67□□□□□ -0.54
TMEM260-211ENST00000556648 KIAA2012Q0VF49 1180 aa11.67□□□□□ -0.54
TMEM260-211ENST00000556648 TXNRD1Q16881 649 aa11.67□□□□□ -0.54
TMEM260-211ENST00000556648 C12orf60Q5U649 245 aa11.67□□□□□ -0.54
TMEM260-211ENST00000556648 ISM2Q6H9L7 571 aa11.67□□□□□ -0.54
TMEM260-211ENST00000556648 OLFM4Q6UX06 510 aa11.67□□□□□ -0.54
TMEM260-211ENST00000556648 MAPKAPK5Q8IW41 473 aa11.67□□□□□ -0.54
TMEM260-211ENST00000556648 FOXP1Q9H334 677 aaPredicted RBP11.67□□□□□ -0.54
TMEM260-211ENST00000556648 CUTAO60888 179 aa11.67□□□□□ -0.54
TMEM260-211ENST00000556648 SLC3A2P08195 630 aaKnown RBP11.67□□□□□ -0.54
TMEM260-211ENST00000556648 VEGFAP15692 232 aaPredicted RBP11.67□□□□□ -0.54
TMEM260-211ENST00000556648 BTDP43251 543 aa11.67□□□□□ -0.54
TMEM260-211ENST00000556648 TBC1D16Q8TBP0 767 aa11.67□□□□□ -0.54
TMEM260-211ENST00000556648 PHF20Q9BVI0 1012 aa11.67□□□□□ -0.54
TMEM260-211ENST00000556648 ANO8Q9HCE9 1232 aaPredicted RBP11.67□□□□□ -0.54
TMEM260-211ENST00000556648 IL17RBQ9NRM6 502 aa11.67□□□□□ -0.54
TMEM260-211ENST00000556648 RBM28Q9NW13 759 aaKnown RBP11.67□□□□□ -0.54
TMEM260-211ENST00000556648 FBXO2Q9UK22 296 aaPredicted RBP11.67□□□□□ -0.54
TMEM260-211ENST00000556648 COL11A2P13942 1736 aaPredicted RBP11.66□□□□□ -0.54
TMEM260-211ENST00000556648 FAM237AA0A1B0GTK4 181 aa11.66□□□□□ -0.54
TMEM260-211ENST00000556648 USP17L3A6NCW0 530 aa11.66□□□□□ -0.54
TMEM260-211ENST00000556648 USP17L4A6NCW7 530 aa11.66□□□□□ -0.54
TMEM260-211ENST00000556648 GOLGA6L19H0YKK7 550 aa11.66□□□□□ -0.54
TMEM260-211ENST00000556648 FOXN1O15353 648 aa11.66□□□□□ -0.54
TMEM260-211ENST00000556648 TFAP4Q01664 338 aa11.66□□□□□ -0.54
TMEM260-211ENST00000556648 AKAP17AQ02040 695 aaKnown RBP11.66□□□□□ -0.54
TMEM260-211ENST00000556648 PDE4BQ07343 736 aa11.66□□□□□ -0.54
TMEM260-211ENST00000556648 PNOCQ13519 176 aa11.66□□□□□ -0.54
TMEM260-211ENST00000556648 NPY5RQ15761 445 aa11.66□□□□□ -0.54
TMEM260-211ENST00000556648 CCDC144BQ3MJ40 725 aa11.66□□□□□ -0.54
TMEM260-211ENST00000556648 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.66□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 8.9 ms