RNA–Protein interactions for RNA: ENST00000555067.1

VRK1-203, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 604 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-203ENST00000555067 FANCGO15287 622 aa9.37□□□□□ -0.91
VRK1-203ENST00000555067 LDHBP07195 334 aaKnown RBP9.37□□□□□ -0.91
VRK1-203ENST00000555067 GDNFP39905 211 aa9.37□□□□□ -0.91
VRK1-203ENST00000555067 PPM1JQ5JR12 505 aa9.37□□□□□ -0.91
VRK1-203ENST00000555067 CARS2Q9HA77 564 aaKnown RBP9.37□□□□□ -0.91
VRK1-203ENST00000555067 GNAT3A8MTJ3 354 aa9.36□□□□□ -0.91
VRK1-203ENST00000555067 BUD31P41223 144 aaPredicted RBP9.36□□□□□ -0.91
VRK1-203ENST00000555067 FGD1P98174 961 aa9.36□□□□□ -0.91
VRK1-203ENST00000555067 PCNX4Q63HM2 1172 aa9.36□□□□□ -0.91
VRK1-203ENST00000555067 MPRIPQ6WCQ1 1025 aa9.36□□□□□ -0.91
VRK1-203ENST00000555067 KCT2Q8NC54 265 aa9.36□□□□□ -0.91
VRK1-203ENST00000555067 MAPK8IP1Q9UQF2 711 aa9.36□□□□□ -0.91
VRK1-203ENST00000555067 DCDC2CA8MYV0 355 aa9.35□□□□□ -0.91
VRK1-203ENST00000555067 CELA3AP09093 270 aa9.35□□□□□ -0.91
VRK1-203ENST00000555067 SV2BQ7L1I2 683 aa9.35□□□□□ -0.91
VRK1-203ENST00000555067 CD320Q9NPF0 282 aa9.35□□□□□ -0.91
VRK1-203ENST00000555067 PODXL2Q9NZ53 605 aa9.35□□□□□ -0.91
VRK1-203ENST00000555067 PCDHA4Q9UN74 947 aa9.35□□□□□ -0.91
VRK1-203ENST00000555067 CSADQ9Y600 493 aa9.35□□□□□ -0.91
VRK1-203ENST00000555067 GNA15P30679 374 aa9.34□□□□□ -0.91
VRK1-203ENST00000555067 ZBTB37Q5TC79 503 aa9.34□□□□□ -0.91
VRK1-203ENST00000555067 ELMO3Q96BJ8 720 aa9.34□□□□□ -0.91
VRK1-203ENST00000555067 FOXQ1Q9C009 403 aa9.34□□□□□ -0.91
VRK1-203ENST00000555067 PRDM5Q9NQX1 630 aaPredicted RBP9.34□□□□□ -0.91
VRK1-203ENST00000555067 TTF2Q9UNY4 1162 aaKnown RBP9.34□□□□□ -0.91
VRK1-203ENST00000555067 PRPF40AO75400 957 aaKnown RBP9.33□□□□□ -0.92
VRK1-203ENST00000555067 EIF4BP23588 611 aaKnown RBP9.33□□□□□ -0.92
VRK1-203ENST00000555067 RASIP1Q5U651 963 aa9.33□□□□□ -0.92
VRK1-203ENST00000555067 C22orf34Q6ZV56 151 aa9.33□□□□□ -0.92
VRK1-203ENST00000555067 C12orf40Q86WS4 652 aa9.33□□□□□ -0.92
VRK1-203ENST00000555067 NPAS4Q8IUM7 802 aa9.33□□□□□ -0.92
VRK1-203ENST00000555067 NSUN3Q9H649 340 aaKnown RBP9.33□□□□□ -0.92
VRK1-203ENST00000555067 ATP13A1Q9HD20 1204 aa9.33□□□□□ -0.92
VRK1-203ENST00000555067 NPIPB6E9PJ23 425 aa9.32□□□□□ -0.92
VRK1-203ENST00000555067 MED14OSP0DP75 135 aa9.32□□□□□ -0.92
VRK1-203ENST00000555067 CDC37L1Q7L3B6 337 aa9.32□□□□□ -0.92
VRK1-203ENST00000555067 HSPA12BQ96MM6 686 aa9.32□□□□□ -0.92
VRK1-203ENST00000555067 DIRC2Q96SL1 478 aa9.32□□□□□ -0.92
VRK1-203ENST00000555067 PRR33A8MZF0 331 aa9.3□□□□□ -0.92
VRK1-203ENST00000555067 INHBBP09529 407 aa9.3□□□□□ -0.92
VRK1-203ENST00000555067 KCNA10Q16322 511 aa9.3□□□□□ -0.92
VRK1-203ENST00000555067 ZNF507Q8TCN5 953 aa9.3□□□□□ -0.92
VRK1-203ENST00000555067 KRTAP17-1Q9BYP8 105 aa9.3□□□□□ -0.92
VRK1-203ENST00000555067 LRIG2O94898 1065 aa9.29□□□□□ -0.92
VRK1-203ENST00000555067 TMEM253P0C7T8 217 aa9.29□□□□□ -0.92
VRK1-203ENST00000555067 ARMCX6Q7L4S7 300 aa9.29□□□□□ -0.92
VRK1-203ENST00000555067 HDXQ7Z353 690 aa9.29□□□□□ -0.92
VRK1-203ENST00000555067 GAL3ST3Q96A11 431 aa9.29□□□□□ -0.92
VRK1-203ENST00000555067 CNTNAP4Q9C0A0 1308 aa9.29□□□□□ -0.92
VRK1-203ENST00000555067 PRAMEF27A3QJZ7 478 aa9.28□□□□□ -0.92
VRK1-203ENST00000555067 SLITRK5O94991 958 aa9.28□□□□□ -0.92
VRK1-203ENST00000555067 GLDCP23378 1020 aa9.28□□□□□ -0.92
VRK1-203ENST00000555067 RPS26P62854 115 aaKnown RBP9.28□□□□□ -0.92
VRK1-203ENST00000555067 TTBK2Q6IQ55 1244 aa9.28□□□□□ -0.92
VRK1-203ENST00000555067 LRFN4Q6PJG9 635 aa9.28□□□□□ -0.92
VRK1-203ENST00000555067 ATG14Q6ZNE5 492 aa9.28□□□□□ -0.92
VRK1-203ENST00000555067 SND1Q7KZF4 910 aaKnown RBP eCLIP9.28□□□□□ -0.92
VRK1-203ENST00000555067 CCDC120Q96HB5 630 aa9.28□□□□□ -0.92
VRK1-203ENST00000555067 KCNK12Q9HB15 430 aa9.28□□□□□ -0.92
VRK1-203ENST00000555067 ST14Q9Y5Y6 855 aa9.28□□□□□ -0.92
VRK1-203ENST00000555067 SNCAIPQ9Y6H5 919 aa9.28□□□□□ -0.92
VRK1-203ENST00000555067 INPP5AQ14642 412 aa9.27□□□□□ -0.93
VRK1-203ENST00000555067 PLPPR2Q96GM1 343 aa9.27□□□□□ -0.93
VRK1-203ENST00000555067 AK5Q9Y6K8 562 aa9.27□□□□□ -0.93
VRK1-203ENST00000555067 CCDC85BQ15834 202 aaPredicted RBP9.26□□□□□ -0.93
VRK1-203ENST00000555067 EAPPQ56P03 285 aaPredicted RBP9.26□□□□□ -0.93
VRK1-203ENST00000555067 MFSD4AQ8N468 514 aa9.26□□□□□ -0.93
VRK1-203ENST00000555067 ALPK1Q96QP1 1244 aa9.26□□□□□ -0.93
VRK1-203ENST00000555067 EPB41L4BQ9H329 900 aa9.26□□□□□ -0.93
VRK1-203ENST00000555067 DCP1AQ9NPI6 582 aaPredicted RBP9.26□□□□□ -0.93
VRK1-203ENST00000555067 LMNB1P20700 586 aa9.25□□□□□ -0.93
VRK1-203ENST00000555067 CAP2P40123 477 aa9.25□□□□□ -0.93
VRK1-203ENST00000555067 RANGAP1P46060 587 aaPredicted RBP9.25□□□□□ -0.93
VRK1-203ENST00000555067 PTPN11Q06124 597 aaPredicted RBP9.25□□□□□ -0.93
VRK1-203ENST00000555067 WIPI1Q5MNZ9 446 aaPredicted RBP9.25□□□□□ -0.93
VRK1-203ENST00000555067 CDKAL1Q5VV42 579 aa9.25□□□□□ -0.93
VRK1-203ENST00000555067 THAP5Q7Z6K1 395 aa9.25□□□□□ -0.93
VRK1-203ENST00000555067 WNT10AQ9GZT5 417 aa9.25□□□□□ -0.93
VRK1-203ENST00000555067 CAPN6Q9Y6Q1 641 aa9.25□□□□□ -0.93
VRK1-203ENST00000555067 ANKRD33BA6NCL7 494 aa9.24□□□□□ -0.93
VRK1-203ENST00000555067 FAM155AB1AL88 458 aaPredicted RBP9.24□□□□□ -0.93
VRK1-203ENST00000555067 H3BS24 57 aa9.24□□□□□ -0.93
VRK1-203ENST00000555067 ETV2O00321 342 aaPredicted RBP9.24□□□□□ -0.93
VRK1-203ENST00000555067 CTSWP56202 376 aa9.24□□□□□ -0.93
VRK1-203ENST00000555067 SFRP5Q5T4F7 317 aa9.24□□□□□ -0.93
VRK1-203ENST00000555067 CIAPIN1Q6FI81 312 aa9.24□□□□□ -0.93
VRK1-203ENST00000555067 C20orf173Q96LM9 149 aa9.24□□□□□ -0.93
VRK1-203ENST00000555067 DUSP9Q99956 384 aaKnown RBP9.24□□□□□ -0.93
VRK1-203ENST00000555067 SMG5Q9UPR3 1016 aaKnown RBP9.24□□□□□ -0.93
VRK1-203ENST00000555067 TCAF2A6NFQ2 919 aa9.23□□□□□ -0.93
VRK1-203ENST00000555067 SRFP11831 508 aa9.23□□□□□ -0.93
VRK1-203ENST00000555067 ETF1P62495 437 aaKnown RBP9.23□□□□□ -0.93
VRK1-203ENST00000555067 MFSD2AQ8NA29 543 aa9.23□□□□□ -0.93
VRK1-203ENST00000555067 ABHD4Q8TB40 342 aa9.23□□□□□ -0.93
VRK1-203ENST00000555067 HOXA5P20719 270 aa9.22□□□□□ -0.93
VRK1-203ENST00000555067 SLBPQ14493 270 aaKnown RBP eCLIP9.22□□□□□ -0.93
VRK1-203ENST00000555067 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.22□□□□□ -0.93
VRK1-203ENST00000555067 FBRSQ9HAH7 460 aa9.22□□□□□ -0.93
VRK1-203ENST00000555067 TACC3Q9Y6A5 838 aa9.22□□□□□ -0.93
VRK1-203ENST00000555067 ZNF746Q6NUN9 644 aaPredicted RBP9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms