RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 ANKRD13AQ8IZ07 590 aa25.12■■□□□ 1.61
VPS29-206ENST00000549578 CTNND1O60716 968 aaKnown RBP25.12■■□□□ 1.61
VPS29-206ENST00000549578 FGRP09769 529 aa25.12■■□□□ 1.61
VPS29-206ENST00000549578 AKR1B1P15121 316 aa25.12■■□□□ 1.61
VPS29-206ENST00000549578 RNF20Q5VTR2 975 aa25.12■■□□□ 1.61
VPS29-206ENST00000549578 STOX1Q6ZVD7 989 aa25.12■■□□□ 1.61
VPS29-206ENST00000549578 SAPCD2Q86UD0 394 aa25.12■■□□□ 1.61
VPS29-206ENST00000549578 RNF41Q9H4P4 317 aaPredicted RBP25.12■■□□□ 1.61
VPS29-206ENST00000549578 FRMD4AQ9P2Q2 1039 aaPredicted RBP25.12■■□□□ 1.61
VPS29-206ENST00000549578 ABT1Q9ULW3 272 aaKnown RBP25.12■■□□□ 1.61
VPS29-206ENST00000549578 CSADQ9Y600 493 aa25.12■■□□□ 1.61
VPS29-206ENST00000549578 ORC4O43929 436 aa25.11■■□□□ 1.61
VPS29-206ENST00000549578 C1QTNF8P60827 252 aa25.11■■□□□ 1.61
VPS29-206ENST00000549578 RASEFQ8IZ41 740 aa25.11■■□□□ 1.61
VPS29-206ENST00000549578 ZNF444Q8N0Y2 327 aaPredicted RBP25.11■■□□□ 1.61
VPS29-206ENST00000549578 NKX2-3Q8TAU0 364 aa25.11■■□□□ 1.61
VPS29-206ENST00000549578 SNCAIPQ9Y6H5 919 aa25.11■■□□□ 1.61
VPS29-206ENST00000549578 TLL2Q9Y6L7 1015 aa25.11■■□□□ 1.61
VPS29-206ENST00000549578 DOCK1Q14185 1865 aa25.11■■□□□ 1.61
VPS29-206ENST00000549578 ATAD5Q96QE3 1844 aa25.1■■□□□ 1.61
VPS29-206ENST00000549578 E7EWF7 191 aa25.1■■□□□ 1.61
VPS29-206ENST00000549578 MPHOSPH10O00566 681 aaKnown RBP25.1■■□□□ 1.61
VPS29-206ENST00000549578 GH2P01242 217 aa25.1■■□□□ 1.61
VPS29-206ENST00000549578 ABCB5Q2M3G0 1257 aa25.1■■□□□ 1.61
VPS29-206ENST00000549578 FAM47AQ5JRC9 791 aa25.1■■□□□ 1.61
VPS29-206ENST00000549578 SCYL3Q8IZE3 742 aa25.1■■□□□ 1.61
VPS29-206ENST00000549578 BACH2Q9BYV9 841 aa25.1■■□□□ 1.61
VPS29-206ENST00000549578 RANBP6O60518 1105 aaKnown RBP25.09■■□□□ 1.61
VPS29-206ENST00000549578 PCP11498 1178 aaKnown RBP25.09■■□□□ 1.61
VPS29-206ENST00000549578 NOL9Q5SY16 702 aaKnown RBP25.09■■□□□ 1.61
VPS29-206ENST00000549578 ELP3Q9H9T3 547 aa25.09■■□□□ 1.61
VPS29-206ENST00000549578 ZBTB21Q9ULJ3 1066 aa25.09■■□□□ 1.61
VPS29-206ENST00000549578 CCDC84Q86UT8 332 aaPredicted RBP25.08■■□□□ 1.61
VPS29-206ENST00000549578 CCDC17Q96LX7 622 aa25.08■■□□□ 1.61
VPS29-206ENST00000549578 CREBZFQ9NS37 354 aa25.08■■□□□ 1.61
VPS29-206ENST00000549578 B4E1Z4 1266 aa25.07■■□□□ 1.6
VPS29-206ENST00000549578 ZKSCAN1P17029 563 aaPredicted RBP25.07■■□□□ 1.6
VPS29-206ENST00000549578 MCCP23508 829 aa25.07■■□□□ 1.6
VPS29-206ENST00000549578 TFAP4Q01664 338 aa25.07■■□□□ 1.6
VPS29-206ENST00000549578 KCNB2Q92953 911 aa25.07■■□□□ 1.6
VPS29-206ENST00000549578 PICK1Q9NRD5 415 aa25.07■■□□□ 1.6
VPS29-206ENST00000549578 SNX14Q9Y5W7 946 aa25.07■■□□□ 1.6
VPS29-206ENST00000549578 ASNSP08243 561 aa25.07■■□□□ 1.6
VPS29-206ENST00000549578 TSPY3P0CV98 308 aa25.07■■□□□ 1.6
VPS29-206ENST00000549578 TSPY8P0CW00 308 aa25.07■■□□□ 1.6
VPS29-206ENST00000549578 CNKSR2Q8WXI2 1034 aa25.07■■□□□ 1.6
VPS29-206ENST00000549578 GNL3Q9BVP2 549 aaKnown RBP eCLIP25.07■■□□□ 1.6
VPS29-206ENST00000549578 CNNM2Q9H8M5 875 aa25.07■■□□□ 1.6
VPS29-206ENST00000549578 CABP5Q9NP86 173 aa25.07■■□□□ 1.6
VPS29-206ENST00000549578 UNCXA6NJT0 531 aa25.06■■□□□ 1.6
VPS29-206ENST00000549578 TSPY2A6NKD2 308 aa25.06■■□□□ 1.6
VPS29-206ENST00000549578 KDM4AO75164 1064 aa25.06■■□□□ 1.6
VPS29-206ENST00000549578 GUCY1A2P33402 732 aa25.06■■□□□ 1.6
VPS29-206ENST00000549578 HTRA3P83110 453 aa25.06■■□□□ 1.6
VPS29-206ENST00000549578 TRDNQ13061 729 aa25.06■■□□□ 1.6
VPS29-206ENST00000549578 SEPT2Q15019 361 aa25.06■■□□□ 1.6
VPS29-206ENST00000549578 RAB3GAP1Q15042 981 aa25.06■■□□□ 1.6
VPS29-206ENST00000549578 CLEC10AQ8IUN9 316 aa25.06■■□□□ 1.6
VPS29-206ENST00000549578 ESR2Q92731 530 aa25.06■■□□□ 1.6
VPS29-206ENST00000549578 SLC10A4Q96EP9 437 aa25.06■■□□□ 1.6
VPS29-206ENST00000549578 KRT23Q9C075 422 aa25.06■■□□□ 1.6
VPS29-206ENST00000549578 PTPRAP18433 802 aa25.05■■□□□ 1.6
VPS29-206ENST00000549578 ADCK5Q3MIX3 580 aa25.05■■□□□ 1.6
VPS29-206ENST00000549578 TSGA10IPQ3SY00 556 aa25.05■■□□□ 1.6
VPS29-206ENST00000549578 TMEM179Q6ZVK1 233 aa25.05■■□□□ 1.6
VPS29-206ENST00000549578 GREB1LQ9C091 1923 aaPredicted RBP25.04■■□□□ 1.6
VPS29-206ENST00000549578 COL9A3Q14050 684 aaPredicted RBP25.04■■□□□ 1.6
VPS29-206ENST00000549578 RALYLQ86SE5 291 aaKnown RBP25.04■■□□□ 1.6
VPS29-206ENST00000549578 NEDD1Q8NHV4 660 aa25.04■■□□□ 1.6
VPS29-206ENST00000549578 NCOA7Q8NI08 942 aa25.04■■□□□ 1.6
VPS29-206ENST00000549578 GINM1Q9NU53 330 aa25.04■■□□□ 1.6
VPS29-206ENST00000549578 ZNF157P51786 506 aaPredicted RBP25.03■■□□□ 1.6
VPS29-206ENST00000549578 RGMBQ6NW40 437 aa25.03■■□□□ 1.6
VPS29-206ENST00000549578 OPTNQ96CV9 577 aa25.03■■□□□ 1.6
VPS29-206ENST00000549578 OTUD5Q96G74 571 aa25.03■■□□□ 1.6
VPS29-206ENST00000549578 ZSWIM5Q9P217 1185 aa25.03■■□□□ 1.6
VPS29-206ENST00000549578 PLIN4Q96Q06 1357 aa25.03■■□□□ 1.6
VPS29-206ENST00000549578 SPDYE5A6NIY4 337 aa25.02■■□□□ 1.6
VPS29-206ENST00000549578 NMT2O60551 498 aa25.02■■□□□ 1.6
VPS29-206ENST00000549578 KRT32Q14532 448 aa25.02■■□□□ 1.6
VPS29-206ENST00000549578 ERO1BQ86YB8 467 aa25.02■■□□□ 1.6
VPS29-206ENST00000549578 ZHX2Q9Y6X8 837 aa25.02■■□□□ 1.6
VPS29-206ENST00000549578 USP17L5A8MUK1 530 aa25.02■■□□□ 1.6
VPS29-206ENST00000549578 CYB5R4Q7L1T6 521 aa25.02■■□□□ 1.6
VPS29-206ENST00000549578 MB21D2Q8IYB1 491 aaPredicted RBP25.02■■□□□ 1.6
VPS29-206ENST00000549578 UPF2Q9HAU5 1272 aaKnown RBP25.02■■□□□ 1.6
VPS29-206ENST00000549578 PHIPQ8WWQ0 1821 aa25.01■■□□□ 1.59
VPS29-206ENST00000549578 IGKV6D-41A0A0C4DH26 115 aa25.01■■□□□ 1.59
VPS29-206ENST00000549578 HSPA6P17066 643 aa25.01■■□□□ 1.59
VPS29-206ENST00000549578 GJA5P36382 358 aa25.01■■□□□ 1.59
VPS29-206ENST00000549578 PAXIP1Q6ZW49 1069 aaPredicted RBP25.01■■□□□ 1.59
VPS29-206ENST00000549578 CHST3Q7LGC8 479 aa25.01■■□□□ 1.59
VPS29-206ENST00000549578 RASAL3Q86YV0 1011 aa25.01■■□□□ 1.59
VPS29-206ENST00000549578 CEP95Q96GE4 821 aa25.01■■□□□ 1.59
VPS29-206ENST00000549578 HHIPL1Q96JK4 782 aa25.01■■□□□ 1.59
VPS29-206ENST00000549578 JAKMIP1Q96N16 626 aaKnown RBP25.01■■□□□ 1.59
VPS29-206ENST00000549578 NEK1Q96PY6 1258 aa25.01■■□□□ 1.59
VPS29-206ENST00000549578 ZKSCAN3Q9BRR0 538 aa25.01■■□□□ 1.59
VPS29-206ENST00000549578 C22orf23Q9BZE7 217 aa25.01■■□□□ 1.59
VPS29-206ENST00000549578 IL17RBQ9NRM6 502 aa25.01■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms