RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-216	ENST00000544622	NUCB1	Q02818	461 aa		13.77	□□□□□ -0.21
YBX3-216	ENST00000544622	SPP2	Q13103	211 aa		13.77	□□□□□ -0.21
YBX3-216	ENST00000544622	SLC4A8	Q2Y0W8	1093 aa		13.77	□□□□□ -0.21
YBX3-216	ENST00000544622	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	13.77	□□□□□ -0.21
YBX3-216	ENST00000544622	APPBP2	Q92624	585 aa		13.77	□□□□□ -0.21
YBX3-216	ENST00000544622	MCM9	Q9NXL9	1143 aa		13.77	□□□□□ -0.21
YBX3-216	ENST00000544622	GDF11	O95390	407 aa		13.76	□□□□□ -0.21
YBX3-216	ENST00000544622	POLR3D	P05423	398 aa	Predicted RBP	13.76	□□□□□ -0.21
YBX3-216	ENST00000544622	C12orf60	Q5U649	245 aa		13.76	□□□□□ -0.21
YBX3-216	ENST00000544622	CHD1L	Q86WJ1	897 aa		13.76	□□□□□ -0.21
YBX3-216	ENST00000544622	PROCA1	Q8NCQ7	364 aa	Predicted RBP	13.76	□□□□□ -0.21
YBX3-216	ENST00000544622	LNPK	Q9C0E8	428 aa		13.76	□□□□□ -0.21
YBX3-216	ENST00000544622	OSBPL3	Q9H4L5	887 aa		13.76	□□□□□ -0.21
YBX3-216	ENST00000544622	ZBTB21	Q9ULJ3	1066 aa		13.76	□□□□□ -0.21
YBX3-216	ENST00000544622	PTPRF	P10586	1907 aa		13.76	□□□□□ -0.21
YBX3-216	ENST00000544622	MYH7	P12883	1935 aa		13.75	□□□□□ -0.21
YBX3-216	ENST00000544622	GSG1L2	A8MUP6	293 aa		13.75	□□□□□ -0.21
YBX3-216	ENST00000544622	SMIM22	K7EJ46	135 aa		13.75	□□□□□ -0.21
YBX3-216	ENST00000544622	CYP2D6	P10635	497 aa		13.75	□□□□□ -0.21
YBX3-216	ENST00000544622	GUCY1A2	P33402	732 aa		13.75	□□□□□ -0.21
YBX3-216	ENST00000544622	BACE1	P56817	501 aa		13.75	□□□□□ -0.21
YBX3-216	ENST00000544622	CERKL	Q49MI3	558 aa	Predicted RBP	13.75	□□□□□ -0.21
YBX3-216	ENST00000544622	B4GALNT3	Q6L9W6	998 aa		13.75	□□□□□ -0.21
YBX3-216	ENST00000544622	GIMAP6	Q6P9H5	292 aa		13.75	□□□□□ -0.21
YBX3-216	ENST00000544622	CTR9	Q6PD62	1173 aa		13.75	□□□□□ -0.21
YBX3-216	ENST00000544622	OTOP1	Q7RTM1	612 aa		13.75	□□□□□ -0.21
YBX3-216	ENST00000544622	TICAM2	Q86XR7	235 aa		13.75	□□□□□ -0.21
YBX3-216	ENST00000544622	ERO1A	Q96HE7	468 aa		13.75	□□□□□ -0.21
YBX3-216	ENST00000544622	TRIM34	Q9BYJ4	488 aa		13.75	□□□□□ -0.21
YBX3-216	ENST00000544622	AS3MT	Q9HBK9	375 aa		13.75	□□□□□ -0.21
YBX3-216	ENST00000544622	ZBTB47	Q9UFB7	747 aa	Predicted RBP	13.75	□□□□□ -0.21
YBX3-216	ENST00000544622	AGTPBP1	Q9UPW5	1226 aa		13.75	□□□□□ -0.21
YBX3-216	ENST00000544622	SLC4A4	Q9Y6R1	1079 aa		13.75	□□□□□ -0.21
YBX3-216	ENST00000544622	ATAD5	Q96QE3	1844 aa		13.74	□□□□□ -0.21
YBX3-216	ENST00000544622	C19orf81	C9J6K1	198 aa		13.74	□□□□□ -0.21
YBX3-216	ENST00000544622	USP17L12	C9JPN9	530 aa		13.74	□□□□□ -0.21
YBX3-216	ENST00000544622	USP17L21	D6R901	530 aa		13.74	□□□□□ -0.21
YBX3-216	ENST00000544622	GH2	P01242	217 aa		13.74	□□□□□ -0.21
YBX3-216	ENST00000544622	CYP2C8	P10632	490 aa		13.74	□□□□□ -0.21
YBX3-216	ENST00000544622	BCR	P11274	1271 aa		13.74	□□□□□ -0.21
YBX3-216	ENST00000544622	SBK1	Q52WX2	424 aa		13.74	□□□□□ -0.21
YBX3-216	ENST00000544622	ZMYM1	Q5SVZ6	1142 aa		13.74	□□□□□ -0.21
YBX3-216	ENST00000544622	TREML2	Q5T2D2	321 aa		13.74	□□□□□ -0.21
YBX3-216	ENST00000544622	PLEKHM2	Q8IWE5	1019 aa		13.74	□□□□□ -0.21
YBX3-216	ENST00000544622	CD99L2	Q8TCZ2	262 aa		13.74	□□□□□ -0.21
YBX3-216	ENST00000544622	SEC62	Q99442	399 aa	Known RBP	13.74	□□□□□ -0.21
YBX3-216	ENST00000544622	USP17L10	C9JJH3	530 aa		13.73	□□□□□ -0.21
YBX3-216	ENST00000544622		M0R2C6	588 aa		13.73	□□□□□ -0.21
YBX3-216	ENST00000544622	GPAA1	O43292	621 aa		13.73	□□□□□ -0.21
YBX3-216	ENST00000544622	HMGCS2	P54868	508 aa		13.73	□□□□□ -0.21
YBX3-216	ENST00000544622	IRX6	P78412	446 aa	Predicted RBP	13.73	□□□□□ -0.21
YBX3-216	ENST00000544622	LACTB	P83111	547 aa	Predicted RBP	13.73	□□□□□ -0.21
YBX3-216	ENST00000544622	ABCB5	Q2M3G0	1257 aa		13.73	□□□□□ -0.21
YBX3-216	ENST00000544622	LRRFIP1	Q32MZ4	808 aa	Known RBP	13.73	□□□□□ -0.21
YBX3-216	ENST00000544622	FBXO46	Q6PJ61	603 aa	Predicted RBP	13.73	□□□□□ -0.21
YBX3-216	ENST00000544622	EVI5L	Q96CN4	794 aa		13.73	□□□□□ -0.21
YBX3-216	ENST00000544622	PARK7	Q99497	189 aa	Known RBP	13.73	□□□□□ -0.21
YBX3-216	ENST00000544622	SWAP70	Q9UH65	585 aa		13.73	□□□□□ -0.21
YBX3-216	ENST00000544622	TRIM17	Q9Y577	477 aa		13.73	□□□□□ -0.21
YBX3-216	ENST00000544622	NAV1	Q8NEY1	1877 aa		13.72	□□□□□ -0.21
YBX3-216	ENST00000544622	CYP2D7	A0A087X1C5	515 aa		13.72	□□□□□ -0.21
YBX3-216	ENST00000544622	PATL2	C9JE40	543 aa	Known RBP	13.72	□□□□□ -0.21
YBX3-216	ENST00000544622	GNAT2	P19087	354 aa		13.72	□□□□□ -0.21
YBX3-216	ENST00000544622	CTGF	P29279	349 aa		13.72	□□□□□ -0.21
YBX3-216	ENST00000544622	HOXA7	P31268	230 aa	Predicted RBP	13.72	□□□□□ -0.21
YBX3-216	ENST00000544622	MTMR2	Q13614	643 aa		13.72	□□□□□ -0.21
YBX3-216	ENST00000544622	GADL1	Q6ZQY3	521 aa		13.72	□□□□□ -0.21
YBX3-216	ENST00000544622	C16orf86	Q6ZW13	317 aa		13.72	□□□□□ -0.21
YBX3-216	ENST00000544622	SLC44A5	Q8NCS7	719 aa		13.72	□□□□□ -0.21
YBX3-216	ENST00000544622	DYNLL2	Q96FJ2	89 aa		13.72	□□□□□ -0.21
YBX3-216	ENST00000544622	FSD1	Q9BTV5	496 aa		13.72	□□□□□ -0.21
YBX3-216	ENST00000544622	ARHGAP39	Q9C0H5	1083 aa		13.72	□□□□□ -0.21
YBX3-216	ENST00000544622	EFCC1	Q9HA90	598 aa		13.72	□□□□□ -0.21
YBX3-216	ENST00000544622	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	13.72	□□□□□ -0.21
YBX3-216	ENST00000544622	EMILIN3	Q9NT22	766 aa		13.72	□□□□□ -0.21
YBX3-216	ENST00000544622	ARPP21	Q9UBL0	812 aa	Predicted RBP	13.72	□□□□□ -0.21
YBX3-216	ENST00000544622	CPA4	Q9UI42	421 aa		13.72	□□□□□ -0.21
YBX3-216	ENST00000544622	HPS5	Q9UPZ3	1129 aa		13.72	□□□□□ -0.21
YBX3-216	ENST00000544622	PTPN22	Q9Y2R2	807 aa		13.72	□□□□□ -0.21
YBX3-216	ENST00000544622	LOC285556	D6RIA3	1793 aa		13.71	□□□□□ -0.21
YBX3-216	ENST00000544622	FOXP2	O15409	715 aa		13.71	□□□□□ -0.21
YBX3-216	ENST00000544622	CDK8	P49336	464 aa		13.71	□□□□□ -0.21
YBX3-216	ENST00000544622	SIAH1	Q8IUQ4	282 aa		13.71	□□□□□ -0.21
YBX3-216	ENST00000544622	C12orf42	Q96LP6	360 aa		13.71	□□□□□ -0.21
YBX3-216	ENST00000544622		A0A1W2PRG0	241 aa		13.7	□□□□□ -0.22
YBX3-216	ENST00000544622	CAPN15	O75808	1086 aa		13.7	□□□□□ -0.22
YBX3-216	ENST00000544622	GNRH1	P01148	92 aa		13.7	□□□□□ -0.22
YBX3-216	ENST00000544622	SEPT2	Q15019	361 aa		13.7	□□□□□ -0.22
YBX3-216	ENST00000544622	IFNL3	Q8IZI9	196 aa		13.7	□□□□□ -0.22
YBX3-216	ENST00000544622	ACER1	Q8TDN7	264 aa		13.7	□□□□□ -0.22
YBX3-216	ENST00000544622	DDRGK1	Q96HY6	314 aa		13.7	□□□□□ -0.22
YBX3-216	ENST00000544622	KIAA1683	Q9H0B3	1180 aa		13.7	□□□□□ -0.22
YBX3-216	ENST00000544622	CABP5	Q9NP86	173 aa		13.7	□□□□□ -0.22
YBX3-216	ENST00000544622	BAZ2A	Q9UIF9	1905 aa	Known RBP	13.7	□□□□□ -0.22
YBX3-216	ENST00000544622	ROBO3	Q96MS0	1386 aa		13.7	□□□□□ -0.22
YBX3-216	ENST00000544622	CCDC85C	A6NKD9	419 aa		13.69	□□□□□ -0.22
YBX3-216	ENST00000544622	RGS19	P49795	217 aa		13.69	□□□□□ -0.22
YBX3-216	ENST00000544622	RAB3GAP1	Q15042	981 aa		13.69	□□□□□ -0.22
YBX3-216	ENST00000544622	ARHGEF6	Q15052	776 aa		13.69	□□□□□ -0.22
YBX3-216	ENST00000544622	POTEE	Q6S8J3	1075 aa		13.69	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms