RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 TRIM47Q96LD4 638 aa5.34□□□□□ -1.55
SNHG1-220ENST00000544550 PRDM6Q9NQX0 595 aa5.34□□□□□ -1.55
SNHG1-220ENST00000544550 DACH1Q9UI36 760 aa5.34□□□□□ -1.55
SNHG1-220ENST00000544550 NOVA2Q9UNW9 492 aaKnown RBP5.34□□□□□ -1.55
SNHG1-220ENST00000544550 SCAF8Q9UPN6 1271 aaKnown RBP5.34□□□□□ -1.55
SNHG1-220ENST00000544550 NOD1Q9Y239 953 aa5.34□□□□□ -1.55
SNHG1-220ENST00000544550 CARNS1A5YM72 827 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 WNT7AO00755 349 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 MYO1BO43795 1136 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 GJB1P08034 283 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 ATP2B4P23634 1241 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 HOXD10P28358 340 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 GRM5P41594 1212 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 UBXN2AP68543 259 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 CLDN10P78369 228 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 FOXC1Q12948 553 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 USP4Q13107 963 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 DCTN1Q14203 1278 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 TAF1CQ15572 869 aaPredicted RBP5.33□□□□□ -1.56
SNHG1-220ENST00000544550 LRIT3Q3SXY7 679 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 OXLD1Q5BKU9 147 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 UBE2Q1Q7Z7E8 422 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 ANKRD13AQ8IZ07 590 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 SH3TC2Q8TF17 1288 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 IRF7Q92985 503 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 SHISA4Q96DD7 197 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 DEFB129Q9H1M3 183 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 ZCCHC17Q9NP64 241 aaKnown RBP5.33□□□□□ -1.56
SNHG1-220ENST00000544550 TOR4AQ9NXH8 423 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 MIS18AQ9NYP9 233 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 PKD2L1Q9P0L9 805 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 PCDHB11Q9Y5F2 797 aa5.33□□□□□ -1.56
SNHG1-220ENST00000544550 ANKRD36CQ5JPF3 1778 aa5.32□□□□□ -1.56
SNHG1-220ENST00000544550 XDHP47989 1333 aa5.32□□□□□ -1.56
SNHG1-220ENST00000544550 ERVH48-1M5A8F1 160 aa5.32□□□□□ -1.56
SNHG1-220ENST00000544550 SASH1O94885 1247 aa5.32□□□□□ -1.56
SNHG1-220ENST00000544550 FARP2O94887 1054 aaPredicted RBP5.32□□□□□ -1.56
SNHG1-220ENST00000544550 DKK1O94907 266 aa5.32□□□□□ -1.56
SNHG1-220ENST00000544550 U2AF1L5P0DN76 240 aaPredicted RBP5.32□□□□□ -1.56
SNHG1-220ENST00000544550 ATP1A2P50993 1020 aa5.32□□□□□ -1.56
SNHG1-220ENST00000544550 GTF2A2P52657 109 aa5.32□□□□□ -1.56
SNHG1-220ENST00000544550 LACTBP83111 547 aaPredicted RBP5.32□□□□□ -1.56
SNHG1-220ENST00000544550 U2AF1Q01081 240 aaKnown RBP eCLIP5.32□□□□□ -1.568e-8■■■□□ 16.8
SNHG1-220ENST00000544550 CC2D1BQ5T0F9 858 aaKnown RBP5.32□□□□□ -1.56
SNHG1-220ENST00000544550 TMEM164Q5U3C3 297 aa5.32□□□□□ -1.56
SNHG1-220ENST00000544550 STRIP1Q5VSL9 837 aa5.32□□□□□ -1.56
SNHG1-220ENST00000544550 COPS6Q7L5N1 327 aa5.32□□□□□ -1.56
SNHG1-220ENST00000544550 LRP10Q7Z4F1 713 aa5.32□□□□□ -1.56
SNHG1-220ENST00000544550 ANKMY2Q8IV38 441 aa5.32□□□□□ -1.56
SNHG1-220ENST00000544550 STK32AQ8WU08 396 aa5.32□□□□□ -1.56
SNHG1-220ENST00000544550 PTPN18Q99952 460 aa5.32□□□□□ -1.56
SNHG1-220ENST00000544550 DNAAF2Q9NVR5 837 aaKnown RBP5.32□□□□□ -1.56
SNHG1-220ENST00000544550 MTMR10Q9NXD2 777 aa5.32□□□□□ -1.56
SNHG1-220ENST00000544550 PCDHGA11Q9Y5H2 935 aa5.32□□□□□ -1.56
SNHG1-220ENST00000544550 NUP98P52948 1817 aa5.32□□□□□ -1.56
SNHG1-220ENST00000544550 KDM3BQ7LBC6 1761 aa5.32□□□□□ -1.56
SNHG1-220ENST00000544550 MED23Q9ULK4 1368 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 ZNF804BA4D1E1 1349 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 RPTORQ8N122 1335 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 TLR2O60603 784 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 BRD1O95696 1058 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 HSPA5P11021 654 aaKnown RBP5.31□□□□□ -1.56
SNHG1-220ENST00000544550 EIF2S2P20042 333 aaKnown RBP5.31□□□□□ -1.56
SNHG1-220ENST00000544550 GRK4P32298 578 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 GTF2IP78347 998 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 CAP1Q01518 475 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 AIMP1Q12904 312 aaKnown RBP5.31□□□□□ -1.56
SNHG1-220ENST00000544550 TNFAIP1Q13829 316 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 ARID5BQ14865 1188 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 CCDC152Q4G0S7 254 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 DACT2Q5SW24 774 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 SIX5Q8N196 739 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 FAM200AQ8TCP9 573 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 RAET1EQ8TD07 263 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 XAGE3Q8WTP9 111 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 U2AF1L4Q8WU68 220 aaKnown RBP5.31□□□□□ -1.56
SNHG1-220ENST00000544550 OPTNQ96CV9 577 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 FAM89AQ96GI7 184 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 CLMNQ96JQ2 1002 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 MRGPRX2Q96LB1 330 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 THUMPD2Q9BTF0 503 aaKnown RBP5.31□□□□□ -1.56
SNHG1-220ENST00000544550 COA1Q9GZY4 146 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 RNF208Q9H0X6 261 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 ATP13A2Q9NQ11 1180 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 STAP2Q9UGK3 403 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 KIAA1024Q9UPX6 916 aa5.31□□□□□ -1.56
SNHG1-220ENST00000544550 CCL15-CCL14A0A0B4J2E2 113 aa5.3□□□□□ -1.56
SNHG1-220ENST00000544550 IRS4O14654 1257 aaPredicted RBP5.3□□□□□ -1.56
SNHG1-220ENST00000544550 SGPL1O95470 568 aa5.3□□□□□ -1.56
SNHG1-220ENST00000544550 ADH1CP00326 375 aa5.3□□□□□ -1.56
SNHG1-220ENST00000544550 CCL5P13501 91 aa5.3□□□□□ -1.56
SNHG1-220ENST00000544550 FSHRP23945 695 aa5.3□□□□□ -1.56
SNHG1-220ENST00000544550 RAB15P59190 212 aa5.3□□□□□ -1.56
SNHG1-220ENST00000544550 ERVK-9P63128 1117 aa5.3□□□□□ -1.56
SNHG1-220ENST00000544550 DHX9Q08211 1270 aaKnown RBP5.3□□□□□ -1.56
SNHG1-220ENST00000544550 DPYDQ12882 1025 aa5.3□□□□□ -1.56
SNHG1-220ENST00000544550 NR5A1Q13285 461 aa5.3□□□□□ -1.56
SNHG1-220ENST00000544550 MTFR1Q15390 333 aa5.3□□□□□ -1.56
SNHG1-220ENST00000544550 DLGAP5Q15398 846 aa5.3□□□□□ -1.56
SNHG1-220ENST00000544550 CCL15Q16663 113 aa5.3□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms