RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 HSPA4P34932 840 aa20.29■□□□□ 0.84
LIG1-204ENST00000542460 RRP1BQ14684 758 aaKnown RBP20.29■□□□□ 0.84
LIG1-204ENST00000542460 INCENPQ9NQS7 918 aa20.29■□□□□ 0.84
LIG1-204ENST00000542460 CREBZFQ9NS37 354 aa20.29■□□□□ 0.84
LIG1-204ENST00000542460 GINM1Q9NU53 330 aa20.29■□□□□ 0.84
LIG1-204ENST00000542460 TRPM7Q96QT4 1865 aa20.29■□□□□ 0.84
LIG1-204ENST00000542460 ZKSCAN1P17029 563 aaPredicted RBP20.28■□□□□ 0.84
LIG1-204ENST00000542460 VGLL4Q14135 290 aa20.28■□□□□ 0.84
LIG1-204ENST00000542460 ABCB5Q2M3G0 1257 aa20.28■□□□□ 0.84
LIG1-204ENST00000542460 NOL9Q5SY16 702 aaKnown RBP20.28■□□□□ 0.84
LIG1-204ENST00000542460 SCYL3Q8IZE3 742 aa20.28■□□□□ 0.84
LIG1-204ENST00000542460 CABP5Q9NP86 173 aa20.28■□□□□ 0.84
LIG1-204ENST00000542460 TOMM22Q9NS69 142 aa20.28■□□□□ 0.84
LIG1-204ENST00000542460 ABT1Q9ULW3 272 aaKnown RBP20.28■□□□□ 0.84
LIG1-204ENST00000542460 TACC3Q9Y6A5 838 aa20.28■□□□□ 0.84
LIG1-204ENST00000542460 LAMB1P07942 1786 aa20.27■□□□□ 0.84
LIG1-204ENST00000542460 GDF11O95390 407 aa20.27■□□□□ 0.84
LIG1-204ENST00000542460 MCCP23508 829 aa20.27■□□□□ 0.84
LIG1-204ENST00000542460 NT5C2P49902 561 aa20.27■□□□□ 0.84
LIG1-204ENST00000542460 JMYQ8N9B5 988 aa20.27■□□□□ 0.84
LIG1-204ENST00000542460 CNNM2Q9H8M5 875 aa20.27■□□□□ 0.84
LIG1-204ENST00000542460 E7EWF7 191 aa20.27■□□□□ 0.83
LIG1-204ENST00000542460 MPHOSPH10O00566 681 aaKnown RBP20.27■□□□□ 0.83
LIG1-204ENST00000542460 ASNSP08243 561 aa20.27■□□□□ 0.83
LIG1-204ENST00000542460 TSGA10IPQ3SY00 556 aa20.27■□□□□ 0.83
LIG1-204ENST00000542460 SLC10A4Q96EP9 437 aa20.27■□□□□ 0.83
LIG1-204ENST00000542460 PICK1Q9NRD5 415 aa20.27■□□□□ 0.83
LIG1-204ENST00000542460 RANBP6O60518 1105 aaKnown RBP20.26■□□□□ 0.83
LIG1-204ENST00000542460 GH2P01242 217 aa20.26■□□□□ 0.83
LIG1-204ENST00000542460 AKR1B1P15121 316 aa20.26■□□□□ 0.83
LIG1-204ENST00000542460 JAG1P78504 1218 aa20.26■□□□□ 0.83
LIG1-204ENST00000542460 TRDNQ13061 729 aa20.26■□□□□ 0.83
LIG1-204ENST00000542460 RRP12Q5JTH9 1297 aaKnown RBP20.26■□□□□ 0.83
LIG1-204ENST00000542460 ESR2Q92731 530 aa20.26■□□□□ 0.83
LIG1-204ENST00000542460 KCNB2Q92953 911 aa20.26■□□□□ 0.83
LIG1-204ENST00000542460 HHIPL1Q96JK4 782 aa20.26■□□□□ 0.83
LIG1-204ENST00000542460 CLMNQ96JQ2 1002 aa20.26■□□□□ 0.83
LIG1-204ENST00000542460 BACH2Q9BYV9 841 aa20.26■□□□□ 0.83
LIG1-204ENST00000542460 KRT23Q9C075 422 aa20.26■□□□□ 0.83
LIG1-204ENST00000542460 ZBTB21Q9ULJ3 1066 aa20.26■□□□□ 0.83
LIG1-204ENST00000542460 SNCAIPQ9Y6H5 919 aa20.26■□□□□ 0.83
LIG1-204ENST00000542460 TAF6LQ9Y6J9 622 aa20.26■□□□□ 0.83
LIG1-204ENST00000542460 NEDD4P46934 1319 aa20.25■□□□□ 0.83
LIG1-204ENST00000542460 TSPY3P0CV98 308 aa20.25■□□□□ 0.83
LIG1-204ENST00000542460 TSPY8P0CW00 308 aa20.25■□□□□ 0.83
LIG1-204ENST00000542460 TMEM179Q6ZVK1 233 aa20.25■□□□□ 0.83
LIG1-204ENST00000542460 ELP3Q9H9T3 547 aa20.25■□□□□ 0.83
LIG1-204ENST00000542460 TSPY2A6NKD2 308 aa20.24■□□□□ 0.83
LIG1-204ENST00000542460 PTPRAP18433 802 aa20.24■□□□□ 0.83
LIG1-204ENST00000542460 TFAP4Q01664 338 aa20.24■□□□□ 0.83
LIG1-204ENST00000542460 KRT32Q14532 448 aa20.24■□□□□ 0.83
LIG1-204ENST00000542460 FAM47AQ5JRC9 791 aa20.24■□□□□ 0.83
LIG1-204ENST00000542460 RGMBQ6NW40 437 aa20.24■□□□□ 0.83
LIG1-204ENST00000542460 RASEFQ8IZ41 740 aa20.24■□□□□ 0.83
LIG1-204ENST00000542460 NCOA7Q8NI08 942 aa20.24■□□□□ 0.83
LIG1-204ENST00000542460 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.24■□□□□ 0.83
LIG1-204ENST00000542460 RAB3GAP1Q15042 981 aa20.23■□□□□ 0.83
LIG1-204ENST00000542460 SHROOM1Q2M3G4 852 aaPredicted RBP20.23■□□□□ 0.83
LIG1-204ENST00000542460 STOX1Q6ZVD7 989 aa20.23■□□□□ 0.83
LIG1-204ENST00000542460 RALYLQ86SE5 291 aaKnown RBP20.23■□□□□ 0.83
LIG1-204ENST00000542460 ERO1BQ86YB8 467 aa20.23■□□□□ 0.83
LIG1-204ENST00000542460 NEDD1Q8NHV4 660 aa20.23■□□□□ 0.83
LIG1-204ENST00000542460 LAMA4Q16363 1823 aa20.23■□□□□ 0.83
LIG1-204ENST00000542460 USP17L5A8MUK1 530 aa20.22■□□□□ 0.83
LIG1-204ENST00000542460 B4E1Z4 1266 aa20.22■□□□□ 0.83
LIG1-204ENST00000542460 KDM4AO75164 1064 aa20.22■□□□□ 0.83
LIG1-204ENST00000542460 ZNF157P51786 506 aaPredicted RBP20.22■□□□□ 0.83
LIG1-204ENST00000542460 PPATQ06203 517 aa20.22■□□□□ 0.83
LIG1-204ENST00000542460 UPF2Q9HAU5 1272 aaKnown RBP20.22■□□□□ 0.83
LIG1-204ENST00000542460 SNX14Q9Y5W7 946 aa20.22■□□□□ 0.83
LIG1-204ENST00000542460 SPDYE5A6NIY4 337 aa20.22■□□□□ 0.83
LIG1-204ENST00000542460 RASSF10A6NK89 507 aa20.22■□□□□ 0.83
LIG1-204ENST00000542460 GUCY1A2P33402 732 aa20.22■□□□□ 0.83
LIG1-204ENST00000542460 SEPT2Q15019 361 aa20.22■□□□□ 0.83
LIG1-204ENST00000542460 DEFB115Q30KQ5 88 aa20.22■□□□□ 0.83
LIG1-204ENST00000542460 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.22■□□□□ 0.83
LIG1-204ENST00000542460 TBC1D2Q9BYX2 928 aa20.22■□□□□ 0.83
LIG1-204ENST00000542460 KANSL2Q9H9L4 492 aa20.22■□□□□ 0.83
LIG1-204ENST00000542460 ZHX2Q9Y6X8 837 aa20.22■□□□□ 0.83
LIG1-204ENST00000542460 CCDC102AQ96A19 550 aa20.21■□□□□ 0.83
LIG1-204ENST00000542460 OPTNQ96CV9 577 aa20.21■□□□□ 0.83
LIG1-204ENST00000542460 AS3MTQ9HBK9 375 aa20.21■□□□□ 0.83
LIG1-204ENST00000542460 TCP11L1Q9NUJ3 509 aa20.21■□□□□ 0.83
LIG1-204ENST00000542460 ZSWIM5Q9P217 1185 aa20.21■□□□□ 0.83
LIG1-204ENST00000542460 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.21■□□□□ 0.83
LIG1-204ENST00000542460 PLIN4Q96Q06 1357 aa20.2■□□□□ 0.82
LIG1-204ENST00000542460 IGKV6D-41A0A0C4DH26 115 aa20.2■□□□□ 0.82
LIG1-204ENST00000542460 ANAPC15P60006 121 aa20.2■□□□□ 0.82
LIG1-204ENST00000542460 NKX2-3Q8TAU0 364 aa20.2■□□□□ 0.82
LIG1-204ENST00000542460 OTUD5Q96G74 571 aa20.2■□□□□ 0.82
LIG1-204ENST00000542460 NEK1Q96PY6 1258 aa20.2■□□□□ 0.82
LIG1-204ENST00000542460 ZBTB48P10074 688 aaPredicted RBP20.19■□□□□ 0.82
LIG1-204ENST00000542460 PPIL2Q13356 520 aa20.19■□□□□ 0.82
LIG1-204ENST00000542460 ADCK5Q3MIX3 580 aa20.19■□□□□ 0.82
LIG1-204ENST00000542460 PPP4R3BQ5MIZ7 849 aa20.19■□□□□ 0.82
LIG1-204ENST00000542460 CCDC84Q86UT8 332 aaPredicted RBP20.19■□□□□ 0.82
LIG1-204ENST00000542460 IQCA1Q86XH1 822 aa20.19■□□□□ 0.82
LIG1-204ENST00000542460 RASAL3Q86YV0 1011 aa20.19■□□□□ 0.82
LIG1-204ENST00000542460 CNKSR2Q8WXI2 1034 aa20.19■□□□□ 0.82
LIG1-204ENST00000542460 WNK4Q96J92 1243 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms