RNA–Protein interactions for RNA: ENST00000541259.1

DDX55-208, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 460 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-208ENST00000541259 METRNQ9UJH8 293 aa11.09□□□□□ -0.63
DDX55-208ENST00000541259 COL2A1P02458 1487 aaPredicted RBP11.08□□□□□ -0.64
DDX55-208ENST00000541259 ATRNL1Q5VV63 1379 aa11.08□□□□□ -0.64
DDX55-208ENST00000541259 ATAD5Q96QE3 1844 aa11.08□□□□□ -0.64
DDX55-208ENST00000541259 FAM196BA6NMK8 535 aa11.08□□□□□ -0.64
DDX55-208ENST00000541259 ADM5C9JUS6 153 aa11.08□□□□□ -0.64
DDX55-208ENST00000541259 PRDM1O75626 825 aa11.08□□□□□ -0.64
DDX55-208ENST00000541259 CPA1P15085 419 aa11.08□□□□□ -0.64
DDX55-208ENST00000541259 TNNI2P48788 182 aa11.08□□□□□ -0.64
DDX55-208ENST00000541259 TNFAIP1Q13829 316 aa11.08□□□□□ -0.64
DDX55-208ENST00000541259 TSGA10IPQ3SY00 556 aa11.08□□□□□ -0.64
DDX55-208ENST00000541259 AKNAD1Q5T1N1 836 aa11.08□□□□□ -0.64
DDX55-208ENST00000541259 NBPF12Q5TAG4 269 aaPredicted RBP11.08□□□□□ -0.64
DDX55-208ENST00000541259 RNF20Q5VTR2 975 aa11.08□□□□□ -0.64
DDX55-208ENST00000541259 TTC6Q86TZ1 520 aa11.08□□□□□ -0.64
DDX55-208ENST00000541259 USP48Q86UV5 1035 aa11.08□□□□□ -0.64
DDX55-208ENST00000541259 AMOTL1Q8IY63 956 aa11.08□□□□□ -0.64
DDX55-208ENST00000541259 ZC3H15Q8WU90 426 aaKnown RBP11.08□□□□□ -0.64
DDX55-208ENST00000541259 DHX36Q9H2U1 1008 aaKnown RBP11.08□□□□□ -0.64
DDX55-208ENST00000541259 DNAJC18Q9H819 358 aa11.08□□□□□ -0.64
DDX55-208ENST00000541259 NEDD4P46934 1319 aa11.08□□□□□ -0.64
DDX55-208ENST00000541259 PITPNM2Q9BZ72 1349 aa11.08□□□□□ -0.64
DDX55-208ENST00000541259 ROBO3Q96MS0 1386 aa11.07□□□□□ -0.64
DDX55-208ENST00000541259 HLA-DOAP06340 250 aa11.07□□□□□ -0.64
DDX55-208ENST00000541259 ZKSCAN1P17029 563 aaPredicted RBP11.07□□□□□ -0.64
DDX55-208ENST00000541259 CDK8P49336 464 aa11.07□□□□□ -0.64
DDX55-208ENST00000541259 GABPAQ06546 454 aa11.07□□□□□ -0.64
DDX55-208ENST00000541259 MAP1SQ66K74 1059 aaPredicted RBP11.07□□□□□ -0.64
DDX55-208ENST00000541259 MFSD6Q6ZSS7 791 aa11.07□□□□□ -0.64
DDX55-208ENST00000541259 C16orf86Q6ZW13 317 aa11.07□□□□□ -0.64
DDX55-208ENST00000541259 MIGA2Q7L4E1 593 aa11.07□□□□□ -0.64
DDX55-208ENST00000541259 KRT26Q7Z3Y9 468 aa11.07□□□□□ -0.64
DDX55-208ENST00000541259 STAG1Q8WVM7 1258 aa11.07□□□□□ -0.64
DDX55-208ENST00000541259 IL17RAQ96F46 866 aa11.07□□□□□ -0.64
DDX55-208ENST00000541259 JAKMIP1Q96N16 626 aaKnown RBP11.07□□□□□ -0.64
DDX55-208ENST00000541259 CSRNP1Q96S65 589 aa11.07□□□□□ -0.64
DDX55-208ENST00000541259 GLIS2Q9BZE0 524 aaPredicted RBP11.07□□□□□ -0.64
DDX55-208ENST00000541259 PI4KBQ9UBF8 816 aa11.07□□□□□ -0.64
DDX55-208ENST00000541259 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.07□□□□□ -0.64
DDX55-208ENST00000541259 MYH4Q9Y623 1939 aa11.06□□□□□ -0.64
DDX55-208ENST00000541259 B4E1Z4 1266 aa11.06□□□□□ -0.64
DDX55-208ENST00000541259 FGRP09769 529 aa11.06□□□□□ -0.64
DDX55-208ENST00000541259 SHMT1P34896 483 aa11.06□□□□□ -0.64
DDX55-208ENST00000541259 ANAPC15P60006 121 aa11.06□□□□□ -0.64
DDX55-208ENST00000541259 FMR1Q06787 632 aaKnown RBP eCLIP11.06□□□□□ -0.64
DDX55-208ENST00000541259 FAM47AQ5JRC9 791 aa11.06□□□□□ -0.64
DDX55-208ENST00000541259 RRP12Q5JTH9 1297 aaKnown RBP11.06□□□□□ -0.64
DDX55-208ENST00000541259 METTL16Q86W50 562 aaKnown RBP11.06□□□□□ -0.64
DDX55-208ENST00000541259 FOXP4Q8IVH2 680 aaPredicted RBP11.06□□□□□ -0.64
DDX55-208ENST00000541259 EHD4Q9H223 541 aa11.06□□□□□ -0.64
DDX55-208ENST00000541259 TOMM22Q9NS69 142 aa11.06□□□□□ -0.64
DDX55-208ENST00000541259 SERPINB13Q9UIV8 391 aa11.06□□□□□ -0.64
DDX55-208ENST00000541259 FZD1Q9UP38 647 aa11.06□□□□□ -0.64
DDX55-208ENST00000541259 BOLA1Q9Y3E2 137 aa11.06□□□□□ -0.64
DDX55-208ENST00000541259 TRPM7Q96QT4 1865 aa11.06□□□□□ -0.64
DDX55-208ENST00000541259 GREB1LQ9C091 1923 aaPredicted RBP11.05□□□□□ -0.64
DDX55-208ENST00000541259 SSC5DA1L4H1 1573 aa11.05□□□□□ -0.64
DDX55-208ENST00000541259 ORC4O43929 436 aa11.05□□□□□ -0.64
DDX55-208ENST00000541259 SLC3A2P08195 630 aaKnown RBP11.05□□□□□ -0.64
DDX55-208ENST00000541259 CASTP20810 708 aaKnown RBP11.05□□□□□ -0.64
DDX55-208ENST00000541259 RASA1P20936 1047 aa11.05□□□□□ -0.64
DDX55-208ENST00000541259 PDE4BQ07343 736 aa11.05□□□□□ -0.64
DDX55-208ENST00000541259 RRP1BQ14684 758 aaKnown RBP11.05□□□□□ -0.64
DDX55-208ENST00000541259 CYB5R4Q7L1T6 521 aa11.05□□□□□ -0.64
DDX55-208ENST00000541259 CHST3Q7LGC8 479 aa11.05□□□□□ -0.64
DDX55-208ENST00000541259 SULF1Q8IWU6 871 aa11.05□□□□□ -0.64
DDX55-208ENST00000541259 MB21D2Q8IYB1 491 aaPredicted RBP11.05□□□□□ -0.64
DDX55-208ENST00000541259 CRACR2BQ8N4Y2 399 aaPredicted RBP11.05□□□□□ -0.64
DDX55-208ENST00000541259 TCEANC2Q96MN5 208 aa11.05□□□□□ -0.64
DDX55-208ENST00000541259 NEK1Q96PY6 1258 aa11.05□□□□□ -0.64
DDX55-208ENST00000541259 UPF3BQ9BZI7 483 aaKnown RBP11.05□□□□□ -0.64
DDX55-208ENST00000541259 XPO5Q9HAV4 1204 aaKnown RBP eCLIP11.05□□□□□ -0.64
DDX55-208ENST00000541259 MKNK2Q9HBH9 465 aa11.05□□□□□ -0.64
DDX55-208ENST00000541259 GPBP1L1Q9HC44 474 aaPredicted RBP11.05□□□□□ -0.64
DDX55-208ENST00000541259 ZSWIM6Q9HCJ5 1215 aa11.05□□□□□ -0.64
DDX55-208ENST00000541259 OTOFQ9HC10 1997 aa11.05□□□□□ -0.64
DDX55-208ENST00000541259 TRAF5O00463 557 aa11.04□□□□□ -0.64
DDX55-208ENST00000541259 RANBP6O60518 1105 aaKnown RBP11.04□□□□□ -0.64
DDX55-208ENST00000541259 KDM4AO75164 1064 aa11.04□□□□□ -0.64
DDX55-208ENST00000541259 ANTXR2P58335 489 aa11.04□□□□□ -0.64
DDX55-208ENST00000541259 JAG1P78504 1218 aa11.04□□□□□ -0.64
DDX55-208ENST00000541259 MAP3K10Q02779 954 aa11.04□□□□□ -0.64
DDX55-208ENST00000541259 KRT32Q14532 448 aa11.04□□□□□ -0.64
DDX55-208ENST00000541259 SHROOM1Q2M3G4 852 aaPredicted RBP11.04□□□□□ -0.64
DDX55-208ENST00000541259 CDC37L1Q7L3B6 337 aa11.04□□□□□ -0.64
DDX55-208ENST00000541259 LDHDQ86WU2 507 aa11.04□□□□□ -0.64
DDX55-208ENST00000541259 NCOA7Q8NI08 942 aa11.04□□□□□ -0.64
DDX55-208ENST00000541259 CDCA5Q96FF9 252 aa11.04□□□□□ -0.64
DDX55-208ENST00000541259 LRRC2Q9BYS8 371 aa11.04□□□□□ -0.64
DDX55-208ENST00000541259 TM6SF1Q9BZW5 370 aa11.04□□□□□ -0.64
DDX55-208ENST00000541259 RNF41Q9H4P4 317 aaPredicted RBP11.04□□□□□ -0.64
DDX55-208ENST00000541259 ZSWIM5Q9P217 1185 aa11.04□□□□□ -0.64
DDX55-208ENST00000541259 SWAP70Q9UH65 585 aa11.04□□□□□ -0.64
DDX55-208ENST00000541259 COLQQ9Y215 455 aaPredicted RBP11.04□□□□□ -0.64
DDX55-208ENST00000541259 PPP2R3BQ9Y5P8 575 aa11.04□□□□□ -0.64
DDX55-208ENST00000541259 KIF3CO14782 793 aa11.03□□□□□ -0.64
DDX55-208ENST00000541259 TBC1D12O60347 775 aa11.03□□□□□ -0.64
DDX55-208ENST00000541259 GDF11O95390 407 aa11.03□□□□□ -0.64
DDX55-208ENST00000541259 AKR1B1P15121 316 aa11.03□□□□□ -0.64
DDX55-208ENST00000541259 RPS6KB1P23443 525 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms