RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 KRI1Q8N9T8 703 aaKnown RBP19.43■□□□□ 0.7
USP28-208ENST00000540438 SLURP2P0DP57 97 aa19.43■□□□□ 0.7
USP28-208ENST00000540438 U2AF2P26368 475 aaKnown RBP eCLIP19.43■□□□□ 0.7
USP28-208ENST00000540438 HIBADHP31937 336 aaKnown RBP19.43■□□□□ 0.7
USP28-208ENST00000540438 FMR1Q06787 632 aaKnown RBP eCLIP19.43■□□□□ 0.7
USP28-208ENST00000540438 MYH2Q9UKX2 1941 aa19.43■□□□□ 0.7
USP28-208ENST00000540438 USP17L3A6NCW0 530 aa19.43■□□□□ 0.7
USP28-208ENST00000540438 USP17L4A6NCW7 530 aa19.43■□□□□ 0.7
USP28-208ENST00000540438 UBAP1LF5GYI3 381 aa19.43■□□□□ 0.7
USP28-208ENST00000540438 ALX1Q15699 326 aa19.43■□□□□ 0.7
USP28-208ENST00000540438 ATL3Q6DD88 541 aa19.43■□□□□ 0.7
USP28-208ENST00000540438 USP17L1Q7RTZ2 530 aa19.43■□□□□ 0.7
USP28-208ENST00000540438 CPLX3Q8WVH0 158 aa19.43■□□□□ 0.7
USP28-208ENST00000540438 HSD3B7Q9H2F3 369 aa19.43■□□□□ 0.7
USP28-208ENST00000540438 BLZF1Q9H2G9 400 aa19.43■□□□□ 0.7
USP28-208ENST00000540438 BSDC1Q9NW68 430 aaPredicted RBP19.43■□□□□ 0.7
USP28-208ENST00000540438 VWA3AA6NCI4 1184 aa19.42■□□□□ 0.7
USP28-208ENST00000540438 TSPY2A6NKD2 308 aa19.42■□□□□ 0.7
USP28-208ENST00000540438 UBASH3AP57075 661 aa19.42■□□□□ 0.7
USP28-208ENST00000540438 PDCL3Q9H2J4 239 aa19.42■□□□□ 0.7
USP28-208ENST00000540438 KRBA2Q6ZNG9 492 aa19.42■□□□□ 0.7
USP28-208ENST00000540438 NSUN4Q96CB9 384 aaKnown RBP19.42■□□□□ 0.7
USP28-208ENST00000540438 RESP18Q5W5W9 173 aa19.41■□□□□ 0.7
USP28-208ENST00000540438 CEP135Q66GS9 1140 aa19.41■□□□□ 0.7
USP28-208ENST00000540438 PIK3AP1Q6ZUJ8 805 aa19.41■□□□□ 0.7
USP28-208ENST00000540438 MRFAP1L1Q96HT8 127 aa19.41■□□□□ 0.7
USP28-208ENST00000540438 F8W031 263 aaPredicted RBP19.41■□□□□ 0.7
USP28-208ENST00000540438 CDK11BP21127 795 aaKnown RBP19.41■□□□□ 0.7
USP28-208ENST00000540438 MCM7P33993 719 aa19.41■□□□□ 0.7
USP28-208ENST00000540438 SEC23AQ15436 765 aa19.41■□□□□ 0.7
USP28-208ENST00000540438 PKN1Q16512 942 aa19.41■□□□□ 0.7
USP28-208ENST00000540438 PPP4R3BQ5MIZ7 849 aa19.41■□□□□ 0.7
USP28-208ENST00000540438 DZIP1Q86YF9 867 aaKnown RBP19.41■□□□□ 0.7
USP28-208ENST00000540438 SRBD1Q8N5C6 995 aaKnown RBP19.41■□□□□ 0.7
USP28-208ENST00000540438 SAMSN1Q9NSI8 373 aaKnown RBP19.41■□□□□ 0.7
USP28-208ENST00000540438 OLFM4Q6UX06 510 aa19.41■□□□□ 0.7
USP28-208ENST00000540438 MAPKAPK5Q8IW41 473 aa19.41■□□□□ 0.7
USP28-208ENST00000540438 STAG2Q8N3U4 1231 aa19.41■□□□□ 0.7
USP28-208ENST00000540438 LRRN4CLQ8ND94 238 aa19.41■□□□□ 0.7
USP28-208ENST00000540438 PLEKHG2Q9H7P9 1386 aa19.4■□□□□ 0.7
USP28-208ENST00000540438 CATIPQ7Z7H3 387 aa19.4■□□□□ 0.7
USP28-208ENST00000540438 JMYQ8N9B5 988 aa19.4■□□□□ 0.7
USP28-208ENST00000540438 VAT1LQ9HCJ6 419 aa19.4■□□□□ 0.7
USP28-208ENST00000540438 DCP1AQ9NPI6 582 aaPredicted RBP19.4■□□□□ 0.7
USP28-208ENST00000540438 DEXIO95424 95 aa19.4■□□□□ 0.7
USP28-208ENST00000540438 ADKP55263 362 aaKnown RBP19.4■□□□□ 0.7
USP28-208ENST00000540438 PTPN14Q15678 1187 aa19.4■□□□□ 0.7
USP28-208ENST00000540438 FBXO2Q9UK22 296 aaPredicted RBP19.4■□□□□ 0.7
USP28-208ENST00000540438 STX8Q9UNK0 236 aa19.4■□□□□ 0.7
USP28-208ENST00000540438 TPM3P06753 285 aa19.39■□□□□ 0.69
USP28-208ENST00000540438 FAM196AQ6ZSG2 479 aa19.39■□□□□ 0.69
USP28-208ENST00000540438 IQCA1Q86XH1 822 aa19.39■□□□□ 0.69
USP28-208ENST00000540438 TGFBRAP1Q8WUH2 860 aa19.39■□□□□ 0.69
USP28-208ENST00000540438 HPSEQ9Y251 543 aa19.39■□□□□ 0.69
USP28-208ENST00000540438 GNAT2P19087 354 aa19.39■□□□□ 0.69
USP28-208ENST00000540438 USP5P45974 858 aa19.39■□□□□ 0.69
USP28-208ENST00000540438 PRIMPOLQ96LW4 560 aa19.39■□□□□ 0.69
USP28-208ENST00000540438 RNF41Q9H4P4 317 aaPredicted RBP19.39■□□□□ 0.69
USP28-208ENST00000540438 ATRNO75882 1429 aa19.39■□□□□ 0.69
USP28-208ENST00000540438 PNPLA7Q6ZV29 1317 aa19.39■□□□□ 0.69
USP28-208ENST00000540438 COL16A1Q07092 1604 aaPredicted RBP19.39■□□□□ 0.69
USP28-208ENST00000540438 SARM1Q6SZW1 724 aa19.38■□□□□ 0.69
USP28-208ENST00000540438 SYT10Q6XYQ8 523 aa19.38■□□□□ 0.69
USP28-208ENST00000540438 ARHGAP30Q7Z6I6 1101 aaPredicted RBP19.38■□□□□ 0.69
USP28-208ENST00000540438 SH3RF3Q8TEJ3 882 aaPredicted RBP19.38■□□□□ 0.69
USP28-208ENST00000540438 ZNF804BA4D1E1 1349 aa19.38■□□□□ 0.69
USP28-208ENST00000540438 SFPQP23246 707 aaKnown RBP eCLIP19.38■□□□□ 0.69
USP28-208ENST00000540438 RFC4P35249 363 aa19.38■□□□□ 0.69
USP28-208ENST00000540438 TFAP4Q01664 338 aa19.38■□□□□ 0.69
USP28-208ENST00000540438 UBE4AQ14139 1066 aa19.38■□□□□ 0.69
USP28-208ENST00000540438 MAN1B1Q9UKM7 699 aa19.38■□□□□ 0.69
USP28-208ENST00000540438 RTCBQ9Y3I0 505 aaKnown RBP19.38■□□□□ 0.69
USP28-208ENST00000540438 NHSL1Q5SYE7 1610 aa19.38■□□□□ 0.69
USP28-208ENST00000540438 HOMER1Q86YM7 354 aa19.38■□□□□ 0.69
USP28-208ENST00000540438 CCDC112Q8NEF3 446 aa19.38■□□□□ 0.69
USP28-208ENST00000540438 NFE2L3Q9Y4A8 694 aa19.38■□□□□ 0.69
USP28-208ENST00000540438 EIF6P56537 245 aaKnown RBP19.37■□□□□ 0.69
USP28-208ENST00000540438 POSTNQ15063 836 aa19.37■□□□□ 0.69
USP28-208ENST00000540438 SMARCC1Q92922 1105 aaPredicted RBP19.37■□□□□ 0.69
USP28-208ENST00000540438 WDR19Q8NEZ3 1342 aa19.37■□□□□ 0.69
USP28-208ENST00000540438 CUTAO60888 179 aa19.37■□□□□ 0.69
USP28-208ENST00000540438 NLRP5P59047 1200 aa19.37■□□□□ 0.69
USP28-208ENST00000540438 TROAPQ12815 778 aa19.37■□□□□ 0.69
USP28-208ENST00000540438 E4F1Q66K89 784 aaPredicted RBP19.37■□□□□ 0.69
USP28-208ENST00000540438 TPTE2Q6XPS3 522 aa19.37■□□□□ 0.69
USP28-208ENST00000540438 GPIHBP1Q8IV16 184 aa19.37■□□□□ 0.69
USP28-208ENST00000540438 SYMPKQ92797 1274 aaKnown RBP19.37■□□□□ 0.69
USP28-208ENST00000540438 PP2D1A8MPX8 630 aa19.36■□□□□ 0.69
USP28-208ENST00000540438 PPP6R2O75170 966 aa19.36■□□□□ 0.69
USP28-208ENST00000540438 CLEC10AQ8IUN9 316 aa19.36■□□□□ 0.69
USP28-208ENST00000540438 MED15Q96RN5 788 aa19.36■□□□□ 0.69
USP28-208ENST00000540438 ZNF215Q9UL58 517 aaPredicted RBP19.36■□□□□ 0.69
USP28-208ENST00000540438 MYH13Q9UKX3 1938 aa19.36■□□□□ 0.69
USP28-208ENST00000540438 PLCD1P51178 756 aa19.36■□□□□ 0.69
USP28-208ENST00000540438 SF3B3Q15393 1217 aaKnown RBP19.36■□□□□ 0.69
USP28-208ENST00000540438 RIMBP2O15034 1052 aa19.35■□□□□ 0.69
USP28-208ENST00000540438 MYL5Q02045 173 aa19.35■□□□□ 0.69
USP28-208ENST00000540438 PTGDRQ13258 359 aa19.35■□□□□ 0.69
USP28-208ENST00000540438 CCAR2Q8N163 923 aaKnown RBP19.35■□□□□ 0.69
USP28-208ENST00000540438 DESI2Q9BSY9 194 aa19.35■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms