RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-208ENST00000534106 ATP11AP98196 1134 aa4.32□□□□□ -1.72
CHMP4A-208ENST00000534106 FSTL1Q12841 308 aa4.32□□□□□ -1.72
CHMP4A-208ENST00000534106 C16orf46Q6P387 395 aa4.32□□□□□ -1.72
CHMP4A-208ENST00000534106 INTS5Q6P9B9 1019 aaKnown RBP4.32□□□□□ -1.72
CHMP4A-208ENST00000534106 NCAPG2Q86XI2 1143 aa4.32□□□□□ -1.72
CHMP4A-208ENST00000534106 NME9Q86XW9 330 aa4.32□□□□□ -1.72
CHMP4A-208ENST00000534106 GALNT11Q8NCW6 608 aa4.32□□□□□ -1.72
CHMP4A-208ENST00000534106 OR13H1Q8NG92 308 aa4.32□□□□□ -1.72
CHMP4A-208ENST00000534106 MKNK1Q9BUB5 465 aa4.32□□□□□ -1.72
CHMP4A-208ENST00000534106 SBF2Q86WG5 1849 aa4.32□□□□□ -1.72
CHMP4A-208ENST00000534106 PAPPAQ13219 1627 aa4.32□□□□□ -1.72
CHMP4A-208ENST00000534106 NSD2O96028 1365 aa4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 CCDC7Q96M83 1385 aa4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 WISP1O95388 367 aa4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 MED26O95402 600 aa4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 MMP10P09238 476 aa4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 KCNA3P22001 575 aa4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 CABP4P57796 275 aa4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 NFIAQ12857 509 aa4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 NAA30Q147X3 362 aaPredicted RBP4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 UVSSAQ2YD98 709 aa4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 MPRIPQ6WCQ1 1025 aa4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 Q6ZS46 218 aa4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 TRIM42Q8IWZ5 723 aa4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 ETFBKMTQ8IXQ9 262 aa4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 ARMC10Q8N2F6 343 aa4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 USHBP1Q8N6Y0 703 aa4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 KLHL23Q8NBE8 558 aa4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 KCNH5Q8NCM2 988 aa4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 RASSF4Q9H2L5 321 aa4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 RNF181Q9P0P0 153 aa4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 RNF114Q9Y508 228 aa4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 OAS3Q9Y6K5 1087 aaKnown RBP4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 KNDC1Q76NI1 1749 aa4.31□□□□□ -1.72
CHMP4A-208ENST00000534106 CPSF1Q10570 1443 aaKnown RBP4.3□□□□□ -1.72
CHMP4A-208ENST00000534106 TNS2Q63HR2 1409 aa4.3□□□□□ -1.72
CHMP4A-208ENST00000534106 HMX2A2RU54 273 aa4.3□□□□□ -1.72
CHMP4A-208ENST00000534106 FSCN2O14926 492 aa4.3□□□□□ -1.72
CHMP4A-208ENST00000534106 HOXD8P13378 290 aaPredicted RBP4.3□□□□□ -1.72
CHMP4A-208ENST00000534106 ZAP70P43403 619 aa4.3□□□□□ -1.72
CHMP4A-208ENST00000534106 LBX1P52954 281 aa4.3□□□□□ -1.72
CHMP4A-208ENST00000534106 TRIP4Q15650 581 aaPredicted RBP4.3□□□□□ -1.72
CHMP4A-208ENST00000534106 LINC00116Q8NCU8 138 aa4.3□□□□□ -1.72
CHMP4A-208ENST00000534106 SMC1BQ8NDV3 1235 aa4.3□□□□□ -1.72
CHMP4A-208ENST00000534106 ZCRB1Q8TBF4 217 aaKnown RBP4.3□□□□□ -1.72
CHMP4A-208ENST00000534106 GPR152Q8TDT2 470 aa4.3□□□□□ -1.72
CHMP4A-208ENST00000534106 ABHD8Q96I13 439 aa4.3□□□□□ -1.72
CHMP4A-208ENST00000534106 DBNDD2Q9BQY9 259 aa4.3□□□□□ -1.72
CHMP4A-208ENST00000534106 SAP130Q9H0E3 1048 aa4.3□□□□□ -1.72
CHMP4A-208ENST00000534106 C7orf69Q9H7B7 122 aa4.3□□□□□ -1.72
CHMP4A-208ENST00000534106 SEC31BQ9NQW1 1179 aa4.3□□□□□ -1.72
CHMP4A-208ENST00000534106 SH2B1Q9NRF2 756 aaPredicted RBP4.3□□□□□ -1.72
CHMP4A-208ENST00000534106 KCNK4Q9NYG8 393 aa4.3□□□□□ -1.72
CHMP4A-208ENST00000534106 CCDC85CA6NKD9 419 aa4.29□□□□□ -1.72
CHMP4A-208ENST00000534106 DDX3YO15523 660 aaKnown RBP4.29□□□□□ -1.72
CHMP4A-208ENST00000534106 GAS2O43903 313 aaKnown RBP4.29□□□□□ -1.72
CHMP4A-208ENST00000534106 WNT11O96014 354 aa4.29□□□□□ -1.72
CHMP4A-208ENST00000534106 PTPRAP18433 802 aa4.29□□□□□ -1.72
CHMP4A-208ENST00000534106 CHRNA5P30532 468 aa4.29□□□□□ -1.72
CHMP4A-208ENST00000534106 ITPK1Q13572 414 aa4.29□□□□□ -1.72
CHMP4A-208ENST00000534106 SWI5Q1ZZU3 235 aa4.29□□□□□ -1.72
CHMP4A-208ENST00000534106 RNF43Q68DV7 783 aa4.29□□□□□ -1.72
CHMP4A-208ENST00000534106 KRTAP19-1Q8IUB9 90 aa4.29□□□□□ -1.72
CHMP4A-208ENST00000534106 ZDHHC13Q8IUH4 622 aa4.29□□□□□ -1.72
CHMP4A-208ENST00000534106 CLEC10AQ8IUN9 316 aa4.29□□□□□ -1.72
CHMP4A-208ENST00000534106 TTC16Q8NEE8 873 aa4.29□□□□□ -1.72
CHMP4A-208ENST00000534106 FLAD1Q8NFF5 587 aa4.29□□□□□ -1.72
CHMP4A-208ENST00000534106 GIMAP7Q8NHV1 300 aa4.29□□□□□ -1.72
CHMP4A-208ENST00000534106 ABI2Q9NYB9 513 aaPredicted RBP4.29□□□□□ -1.72
CHMP4A-208ENST00000534106 KCPQ6ZWJ8 1503 aa4.29□□□□□ -1.72
CHMP4A-208ENST00000534106 RGPD3A6NKT7 1758 aaPredicted RBP4.29□□□□□ -1.72
CHMP4A-208ENST00000534106 RGPD4Q7Z3J3 1758 aa4.29□□□□□ -1.72
CHMP4A-208ENST00000534106 ANKRD36BQ8N2N9 1353 aa4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 USP47Q96K76 1375 aa4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 CENPJQ9HC77 1338 aaPredicted RBP4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 COL18A1P39060 1754 aa4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 KIAA1324LA8MWY0 1029 aaPredicted RBP4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 BMP3P12645 472 aa4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 EPHA1P21709 976 aa4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 ARL4DP49703 201 aa4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 TGFB2P61812 414 aa4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 NBPF6Q5VWK0 638 aa4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 FDX2Q6P4F2 183 aa4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 KIAA1211Q6ZU35 1233 aa4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 BEND4Q6ZU67 534 aa4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 SHKBP1Q8TBC3 707 aa4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 UBASH3BQ8TF42 649 aa4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 SLC7A3Q8WY07 619 aa4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 PIGBQ92521 554 aa4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 IP6K1Q92551 441 aa4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 KLHDC7BQ96G42 594 aa4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 MYRFLQ96LU7 910 aa4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 NBPF4Q96M43 638 aa4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 FAM83CQ9BQN1 747 aa4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 PBX4Q9BYU1 374 aa4.28□□□□□ -1.72
CHMP4A-208ENST00000534106 KDM2BQ8NHM5 1336 aa4.27□□□□□ -1.73
CHMP4A-208ENST00000534106 SLIT3O75094 1523 aa4.27□□□□□ -1.73
CHMP4A-208ENST00000534106 KAT6BQ8WYB5 2073 aa4.27□□□□□ -1.73
CHMP4A-208ENST00000534106 PXDNLA1KZ92 1463 aa4.27□□□□□ -1.73
CHMP4A-208ENST00000534106 WDR64B1ANS9 1081 aa4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms