RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 PDIA3P30101 505 aaKnown RBP24.86■■□□□ 1.57
VPS28-212ENST00000530836 TNNI2P48788 182 aa24.86■■□□□ 1.57
VPS28-212ENST00000530836 RRP12Q5JTH9 1297 aaKnown RBP24.86■■□□□ 1.57
VPS28-212ENST00000530836 FAM83AQ86UY5 434 aa24.86■■□□□ 1.57
VPS28-212ENST00000530836 SGMS1Q86VZ5 419 aa24.86■■□□□ 1.57
VPS28-212ENST00000530836 NECAB1Q8N987 351 aa24.86■■□□□ 1.57
VPS28-212ENST00000530836 IGDCC4Q8TDY8 1250 aa24.86■■□□□ 1.57
VPS28-212ENST00000530836 DDX52Q9Y2R4 599 aaKnown RBP eCLIP24.86■■□□□ 1.571e-7■■■■□ 24.2
VPS28-212ENST00000530836 POLR3DP05423 398 aaPredicted RBP24.86■■□□□ 1.57
VPS28-212ENST00000530836 NFIAQ12857 509 aa24.86■■□□□ 1.57
VPS28-212ENST00000530836 TACC3Q9Y6A5 838 aa24.86■■□□□ 1.57
VPS28-212ENST00000530836 FLT1P17948 1338 aa24.85■■□□□ 1.57
VPS28-212ENST00000530836 CYP2D7A0A087X1C5 515 aa24.85■■□□□ 1.57
VPS28-212ENST00000530836 IFIT3O14879 490 aaKnown RBP24.85■■□□□ 1.57
VPS28-212ENST00000530836 WDHD1O75717 1129 aaPredicted RBP24.85■■□□□ 1.57
VPS28-212ENST00000530836 ST3GAL1Q11201 340 aa24.85■■□□□ 1.57
VPS28-212ENST00000530836 STK3Q13188 491 aa24.85■■□□□ 1.57
VPS28-212ENST00000530836 TMEM67Q5HYA8 995 aa24.85■■□□□ 1.57
VPS28-212ENST00000530836 PRAMEF18Q5VWM3 479 aa24.85■■□□□ 1.57
VPS28-212ENST00000530836 MAPKAPK5Q8IW41 473 aa24.85■■□□□ 1.57
VPS28-212ENST00000530836 CDCA5Q96FF9 252 aa24.85■■□□□ 1.57
VPS28-212ENST00000530836 UBAC1Q9BSL1 405 aa24.85■■□□□ 1.57
VPS28-212ENST00000530836 INCENPQ9NQS7 918 aa24.85■■□□□ 1.57
VPS28-212ENST00000530836 FAM198AQ9UFP1 575 aa24.85■■□□□ 1.57
VPS28-212ENST00000530836 IQCA1Q86XH1 822 aa24.84■■□□□ 1.57
VPS28-212ENST00000530836 CNTNAP1P78357 1384 aa24.84■■□□□ 1.57
VPS28-212ENST00000530836 NAV1Q8NEY1 1877 aa24.84■■□□□ 1.57
VPS28-212ENST00000530836 KLF18A0A0U1RQI7 1052 aa24.83■■□□□ 1.57
VPS28-212ENST00000530836 PDCP20941 246 aa24.83■■□□□ 1.57
VPS28-212ENST00000530836 GJB2P29033 226 aa24.83■■□□□ 1.57
VPS28-212ENST00000530836 SCRN1Q12765 414 aa24.83■■□□□ 1.57
VPS28-212ENST00000530836 NPM3O75607 178 aaKnown RBP24.83■■□□□ 1.56
VPS28-212ENST00000530836 CST9Q5W186 159 aa24.83■■□□□ 1.56
VPS28-212ENST00000530836 FAM151AQ8WW52 585 aa24.83■■□□□ 1.56
VPS28-212ENST00000530836 TMEM39BQ9GZU3 492 aa24.83■■□□□ 1.56
VPS28-212ENST00000530836 LY9Q9HBG7 655 aa24.83■■□□□ 1.56
VPS28-212ENST00000530836 KIF3AQ9Y496 699 aa24.83■■□□□ 1.56
VPS28-212ENST00000530836 POLR2AP24928 1970 aaKnown RBP24.82■■□□□ 1.56
VPS28-212ENST00000530836 ENTPD3O75355 529 aa24.82■■□□□ 1.56
VPS28-212ENST00000530836 APLP1P51693 650 aa24.82■■□□□ 1.56
VPS28-212ENST00000530836 RCAN1P53805 252 aa24.82■■□□□ 1.56
VPS28-212ENST00000530836 HMGN5P82970 282 aaKnown RBP24.82■■□□□ 1.56
VPS28-212ENST00000530836 TCP10Q12799 353 aa24.82■■□□□ 1.56
VPS28-212ENST00000530836 TTC6Q86TZ1 520 aa24.82■■□□□ 1.56
VPS28-212ENST00000530836 TEPSINQ96N21 525 aa24.82■■□□□ 1.56
VPS28-212ENST00000530836 GBP4Q96PP9 640 aa24.82■■□□□ 1.56
VPS28-212ENST00000530836 DDX4Q9NQI0 724 aaKnown RBP24.82■■□□□ 1.56
VPS28-212ENST00000530836 NAP1L2Q9ULW6 460 aaPredicted RBP24.82■■□□□ 1.56
VPS28-212ENST00000530836 CCDC69A6NI79 296 aa24.81■■□□□ 1.56
VPS28-212ENST00000530836 RANBP6O60518 1105 aaKnown RBP24.81■■□□□ 1.56
VPS28-212ENST00000530836 CELF2O95319 508 aaKnown RBP24.81■■□□□ 1.56
VPS28-212ENST00000530836 CYP2D6P10635 497 aa24.81■■□□□ 1.56
VPS28-212ENST00000530836 WTAPQ15007 396 aa24.81■■□□□ 1.56
VPS28-212ENST00000530836 NFKBIBQ15653 356 aa24.81■■□□□ 1.56
VPS28-212ENST00000530836 CCDC178Q5BJE1 867 aa24.81■■□□□ 1.56
VPS28-212ENST00000530836 FOCADQ5VW36 1801 aa24.81■■□□□ 1.56
VPS28-212ENST00000530836 SYNE3Q6ZMZ3 975 aa24.81■■□□□ 1.56
VPS28-212ENST00000530836 NFXL1Q6ZNB6 911 aa24.81■■□□□ 1.56
VPS28-212ENST00000530836 TNPO1Q92973 898 aaKnown RBP24.81■■□□□ 1.56
VPS28-212ENST00000530836 WDR33Q9C0J8 1336 aaKnown RBP24.81■■□□□ 1.56
VPS28-212ENST00000530836 TAOK2Q9UL54 1235 aa24.81■■□□□ 1.56
VPS28-212ENST00000530836 BRPF3Q9ULD4 1205 aa24.81■■□□□ 1.56
VPS28-212ENST00000530836 CDK5RAP2Q96SN8 1893 aa24.8■■□□□ 1.56
VPS28-212ENST00000530836 ECM29Q5VYK3 1845 aa24.8■■□□□ 1.56
VPS28-212ENST00000530836 GOLGA8BA8MQT2 603 aa24.8■■□□□ 1.56
VPS28-212ENST00000530836 SUPT20HL1Q3ZLR7 823 aa24.8■■□□□ 1.56
VPS28-212ENST00000530836 CLEC17AQ6ZS10 378 aa24.8■■□□□ 1.56
VPS28-212ENST00000530836 ZFPM1Q8IX07 1006 aa24.8■■□□□ 1.56
VPS28-212ENST00000530836 STK11IPQ8N1F8 1099 aa24.8■■□□□ 1.56
VPS28-212ENST00000530836 ZSCAN10Q96SZ4 725 aaPredicted RBP24.8■■□□□ 1.56
VPS28-212ENST00000530836 ZNF408Q9H9D4 720 aa24.8■■□□□ 1.56
VPS28-212ENST00000530836 GPHNQ9NQX3 736 aaPredicted RBP24.8■■□□□ 1.56
VPS28-212ENST00000530836 DDX60LQ5H9U9 1706 aaKnown RBP24.8■■□□□ 1.56
VPS28-212ENST00000530836 BRD1O95696 1058 aa24.79■■□□□ 1.56
VPS28-212ENST00000530836 PICALMQ13492 652 aa24.79■■□□□ 1.56
VPS28-212ENST00000530836 NBPF12Q5TAG4 269 aaPredicted RBP24.79■■□□□ 1.56
VPS28-212ENST00000530836 APOA5Q6Q788 366 aa24.79■■□□□ 1.56
VPS28-212ENST00000530836 NKX2-3Q8TAU0 364 aa24.79■■□□□ 1.56
VPS28-212ENST00000530836 MKNK2Q9HBH9 465 aa24.79■■□□□ 1.56
VPS28-212ENST00000530836 SLC12A7Q9Y666 1083 aa24.79■■□□□ 1.56
VPS28-212ENST00000530836 C16orf86Q6ZW13 317 aa24.79■■□□□ 1.56
VPS28-212ENST00000530836 SMARCC2Q8TAQ2 1214 aa24.79■■□□□ 1.56
VPS28-212ENST00000530836 SAP30BPQ9UHR5 308 aaKnown RBP24.79■■□□□ 1.56
VPS28-212ENST00000530836 TMEM88BA6NKF7 163 aa24.78■■□□□ 1.56
VPS28-212ENST00000530836 ZBTB43O43298 467 aa24.78■■□□□ 1.56
VPS28-212ENST00000530836 NF2P35240 595 aa24.78■■□□□ 1.56
VPS28-212ENST00000530836 CDAN1Q8IWY9 1227 aa24.78■■□□□ 1.56
VPS28-212ENST00000530836 TNKSO95271 1327 aa24.77■■□□□ 1.56
VPS28-212ENST00000530836 TSPY2A6NKD2 308 aa24.77■■□□□ 1.56
VPS28-212ENST00000530836 SMIM22K7EJ46 135 aa24.77■■□□□ 1.56
VPS28-212ENST00000530836 STX6O43752 255 aa24.77■■□□□ 1.56
VPS28-212ENST00000530836 PRDM1O75626 825 aa24.77■■□□□ 1.56
VPS28-212ENST00000530836 HSPA6P17066 643 aa24.77■■□□□ 1.56
VPS28-212ENST00000530836 PLCD1P51178 756 aa24.77■■□□□ 1.56
VPS28-212ENST00000530836 CCT2P78371 535 aaKnown RBP24.77■■□□□ 1.56
VPS28-212ENST00000530836 PPP2R5BQ15173 497 aa24.77■■□□□ 1.56
VPS28-212ENST00000530836 CPLX2Q6PUV4 134 aaKnown RBP24.77■■□□□ 1.56
VPS28-212ENST00000530836 ZNF444Q8N0Y2 327 aaPredicted RBP24.77■■□□□ 1.56
VPS28-212ENST00000530836 OSBPL5Q9H0X9 879 aaPredicted RBP24.77■■□□□ 1.56
VPS28-212ENST00000530836 DHX36Q9H2U1 1008 aaKnown RBP24.77■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms