RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 TNKSO95271 1327 aa12.69□□□□□ -0.38
HDAC9-228ENST00000524023 RREB1Q92766 1687 aa12.69□□□□□ -0.38
HDAC9-228ENST00000524023 FMR1Q06787 632 aaKnown RBP eCLIP12.69□□□□□ -0.38
HDAC9-228ENST00000524023 GOLGA8FQ08AF8 430 aa12.69□□□□□ -0.38
HDAC9-228ENST00000524023 GOLGA8DPQ0D2H9 430 aa12.69□□□□□ -0.38
HDAC9-228ENST00000524023 HOMER1Q86YM7 354 aa12.69□□□□□ -0.38
HDAC9-228ENST00000524023 TMEM139Q8IV31 216 aa12.69□□□□□ -0.38
HDAC9-228ENST00000524023 ENOX1Q8TC92 643 aaKnown RBP12.69□□□□□ -0.38
HDAC9-228ENST00000524023 ESR2Q92731 530 aa12.69□□□□□ -0.38
HDAC9-228ENST00000524023 SMARCE1Q969G3 411 aa12.69□□□□□ -0.38
HDAC9-228ENST00000524023 NOL10Q9BSC4 688 aaKnown RBP12.69□□□□□ -0.38
HDAC9-228ENST00000524023 RNF26Q9BY78 433 aaPredicted RBP12.69□□□□□ -0.38
HDAC9-228ENST00000524023 GTPBP4Q9BZE4 634 aaKnown RBP12.69□□□□□ -0.38
HDAC9-228ENST00000524023 CABP5Q9NP86 173 aa12.69□□□□□ -0.38
HDAC9-228ENST00000524023 DACH1Q9UI36 760 aa12.69□□□□□ -0.38
HDAC9-228ENST00000524023 COL4A1P02462 1669 aa12.68□□□□□ -0.38
HDAC9-228ENST00000524023 MAGEB6P1A0A0J9YX57 407 aa12.68□□□□□ -0.38
HDAC9-228ENST00000524023 ACTN4O43707 911 aaKnown RBP12.68□□□□□ -0.38
HDAC9-228ENST00000524023 ZNF18P17022 549 aa12.68□□□□□ -0.38
HDAC9-228ENST00000524023 ATP2B1P20020 1258 aa12.68□□□□□ -0.38
HDAC9-228ENST00000524023 TBX2Q13207 712 aaPredicted RBP12.68□□□□□ -0.38
HDAC9-228ENST00000524023 PPP2R5BQ15173 497 aa12.68□□□□□ -0.38
HDAC9-228ENST00000524023 KANK3Q6NY19 840 aa12.68□□□□□ -0.38
HDAC9-228ENST00000524023 FBXO38Q6PIJ6 1188 aa12.68□□□□□ -0.38
HDAC9-228ENST00000524023 FCHSD1Q86WN1 690 aa12.68□□□□□ -0.38
HDAC9-228ENST00000524023 REXO1L1PQ8IX06 675 aa12.68□□□□□ -0.38
HDAC9-228ENST00000524023 GRAMD1CQ8IYS0 662 aa12.68□□□□□ -0.38
HDAC9-228ENST00000524023 TRIML1Q8N9V2 468 aa12.68□□□□□ -0.38
HDAC9-228ENST00000524023 SHISA4Q96DD7 197 aa12.68□□□□□ -0.38
HDAC9-228ENST00000524023 NFE2L3Q9Y4A8 694 aa12.68□□□□□ -0.38
HDAC9-228ENST00000524023 MORC2Q9Y6X9 1032 aaPredicted RBP12.68□□□□□ -0.38
HDAC9-228ENST00000524023 ZNF804BA4D1E1 1349 aa12.68□□□□□ -0.38
HDAC9-228ENST00000524023 PHLPP2Q6ZVD8 1323 aa12.68□□□□□ -0.38
HDAC9-228ENST00000524023 SMIM22K7EJ46 135 aa12.67□□□□□ -0.38
HDAC9-228ENST00000524023 ZNF827Q17R98 1081 aa12.67□□□□□ -0.38
HDAC9-228ENST00000524023 HSP90AA4PQ58FG1 418 aa12.67□□□□□ -0.38
HDAC9-228ENST00000524023 TRIM65Q6PJ69 517 aa12.67□□□□□ -0.38
HDAC9-228ENST00000524023 USP49Q70CQ1 688 aa12.67□□□□□ -0.38
HDAC9-228ENST00000524023 PDILTQ8N807 584 aa12.67□□□□□ -0.38
HDAC9-228ENST00000524023 SPATA20Q8TB22 786 aa12.67□□□□□ -0.38
HDAC9-228ENST00000524023 CSRNP2Q9H175 543 aa12.67□□□□□ -0.38
HDAC9-228ENST00000524023 RAI14Q9P0K7 980 aa12.67□□□□□ -0.38
HDAC9-228ENST00000524023 ABCF2Q9UG63 623 aa12.67□□□□□ -0.38
HDAC9-228ENST00000524023 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.67□□□□□ -0.38
HDAC9-228ENST00000524023 BAZ2AQ9UIF9 1905 aaKnown RBP12.67□□□□□ -0.38
HDAC9-228ENST00000524023 COL16A1Q07092 1604 aaPredicted RBP12.67□□□□□ -0.38
HDAC9-228ENST00000524023 CACNA1SQ13698 1873 aa12.67□□□□□ -0.38
HDAC9-228ENST00000524023 LOC102724428A0A0B4J2F2 783 aa12.67□□□□□ -0.38
HDAC9-228ENST00000524023 ARHGAP6O43182 974 aa12.67□□□□□ -0.38
HDAC9-228ENST00000524023 SIK1P57059 783 aa12.67□□□□□ -0.38
HDAC9-228ENST00000524023 AKAP17AQ02040 695 aaKnown RBP12.67□□□□□ -0.38
HDAC9-228ENST00000524023 PKN1Q16512 942 aa12.67□□□□□ -0.38
HDAC9-228ENST00000524023 ENAHQ8N8S7 591 aaPredicted RBP12.67□□□□□ -0.38
HDAC9-228ENST00000524023 CDC5LQ99459 802 aaKnown RBP12.67□□□□□ -0.38
HDAC9-228ENST00000524023 RIOK1Q9BRS2 568 aaKnown RBP12.67□□□□□ -0.38
HDAC9-228ENST00000524023 DNAI1Q9UI46 699 aa12.67□□□□□ -0.38
HDAC9-228ENST00000524023 CICQ96RK0 1608 aaPredicted RBP12.67□□□□□ -0.38
HDAC9-228ENST00000524023 A0A1B0GUL6 1792 aa12.67□□□□□ -0.38
HDAC9-228ENST00000524023 A0A0G2JS52 829 aa12.66□□□□□ -0.38
HDAC9-228ENST00000524023 XBP1P17861 261 aa12.66□□□□□ -0.38
HDAC9-228ENST00000524023 CDK11BP21127 795 aaKnown RBP12.66□□□□□ -0.38
HDAC9-228ENST00000524023 GYG1P46976 350 aa12.66□□□□□ -0.38
HDAC9-228ENST00000524023 ITPK1Q13572 414 aa12.66□□□□□ -0.38
HDAC9-228ENST00000524023 ERCC6LQ2NKX8 1250 aa12.66□□□□□ -0.38
HDAC9-228ENST00000524023 LRRN4CLQ8ND94 238 aa12.66□□□□□ -0.38
HDAC9-228ENST00000524023 MED15Q96RN5 788 aa12.66□□□□□ -0.38
HDAC9-228ENST00000524023 ZSCAN10Q96SZ4 725 aaPredicted RBP12.66□□□□□ -0.38
HDAC9-228ENST00000524023 PHF20Q9BVI0 1012 aa12.66□□□□□ -0.38
HDAC9-228ENST00000524023 VPS54Q9P1Q0 977 aa12.66□□□□□ -0.38
HDAC9-228ENST00000524023 DUOX1Q9NRD9 1551 aa12.66□□□□□ -0.38
HDAC9-228ENST00000524023 COL1A1P02452 1464 aaPredicted RBP12.66□□□□□ -0.38
HDAC9-228ENST00000524023 FAM205CA6NFA0 338 aa12.66□□□□□ -0.38
HDAC9-228ENST00000524023 TRIM75PA6NK02 468 aa12.66□□□□□ -0.38
HDAC9-228ENST00000524023 ZSCAN12O43309 604 aa12.66□□□□□ -0.38
HDAC9-228ENST00000524023 FUT2Q10981 343 aa12.66□□□□□ -0.38
HDAC9-228ENST00000524023 TRMT44Q8IYL2 757 aaKnown RBP12.66□□□□□ -0.38
HDAC9-228ENST00000524023 ACSBG1Q96GR2 724 aa12.66□□□□□ -0.38
HDAC9-228ENST00000524023 GNL3LQ9NVN8 582 aaKnown RBP12.66□□□□□ -0.38
HDAC9-228ENST00000524023 AATFQ9NY61 560 aaKnown RBP eCLIP12.66□□□□□ -0.38
HDAC9-228ENST00000524023 NPHP1O15259 732 aa12.65□□□□□ -0.38
HDAC9-228ENST00000524023 PRPF3O43395 683 aaKnown RBP12.65□□□□□ -0.38
HDAC9-228ENST00000524023 KRT2P35908 639 aa12.65□□□□□ -0.38
HDAC9-228ENST00000524023 PLCD1P51178 756 aa12.65□□□□□ -0.38
HDAC9-228ENST00000524023 EARS2Q5JPH6 523 aaKnown RBP12.65□□□□□ -0.38
HDAC9-228ENST00000524023 SPECC1LQ69YQ0 1117 aa12.65□□□□□ -0.38
HDAC9-228ENST00000524023 NUTM2AQ8IVF1 878 aaPredicted RBP12.65□□□□□ -0.38
HDAC9-228ENST00000524023 TC2NQ8N9U0 490 aa12.65□□□□□ -0.38
HDAC9-228ENST00000524023 BAG1Q99933 345 aaPredicted RBP12.65□□□□□ -0.38
HDAC9-228ENST00000524023 PPP2R2CQ9Y2T4 447 aa12.65□□□□□ -0.38
HDAC9-228ENST00000524023 DLEC1Q9Y238 1755 aa12.65□□□□□ -0.38
HDAC9-228ENST00000524023 TAF1P21675 1872 aa12.65□□□□□ -0.38
HDAC9-228ENST00000524023 A0A087X0B3 334 aa12.64□□□□□ -0.39
HDAC9-228ENST00000524023 WTIPA6NIX2 430 aaPredicted RBP12.64□□□□□ -0.39
HDAC9-228ENST00000524023 FANCGO15287 622 aa12.64□□□□□ -0.39
HDAC9-228ENST00000524023 STX10O60499 249 aa12.64□□□□□ -0.39
HDAC9-228ENST00000524023 H2AFXP16104 143 aaPredicted RBP12.64□□□□□ -0.39
HDAC9-228ENST00000524023 ERCC5P28715 1186 aaPredicted RBP12.64□□□□□ -0.39
HDAC9-228ENST00000524023 DYNLL1P63167 89 aaKnown RBP12.64□□□□□ -0.39
HDAC9-228ENST00000524023 UBE4AQ14139 1066 aa12.64□□□□□ -0.39
HDAC9-228ENST00000524023 DDB1Q16531 1140 aa12.64□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms