RNA–Protein interactions for RNA: ENST00000494503.1

UBR4-216, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 3

Gene UBR4, Length 598 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-216ENST00000494503 ZBTB22O15209 634 aa11.78□□□□□ -0.52
UBR4-216ENST00000494503 PEX10O60683 326 aa11.78□□□□□ -0.52
UBR4-216ENST00000494503 USP5P45974 858 aa11.78□□□□□ -0.52
UBR4-216ENST00000494503 BACE1P56817 501 aa11.78□□□□□ -0.52
UBR4-216ENST00000494503 TRIM32Q13049 653 aa11.78□□□□□ -0.52
UBR4-216ENST00000494503 ZKSCAN2Q63HK3 967 aa11.78□□□□□ -0.52
UBR4-216ENST00000494503 MIGA1Q8NAN2 632 aa11.78□□□□□ -0.52
UBR4-216ENST00000494503 PAK6Q9NQU5 681 aaPredicted RBP11.78□□□□□ -0.52
UBR4-216ENST00000494503 STAP2Q9UGK3 403 aa11.78□□□□□ -0.52
UBR4-216ENST00000494503 ZMYND8Q9ULU4 1186 aaPredicted RBP11.78□□□□□ -0.52
UBR4-216ENST00000494503 DDX60LQ5H9U9 1706 aaKnown RBP11.77□□□□□ -0.52
UBR4-216ENST00000494503 USP17L10C9JJH3 530 aa11.77□□□□□ -0.53
UBR4-216ENST00000494503 CYP7A1P22680 504 aa11.77□□□□□ -0.53
UBR4-216ENST00000494503 ZAP70P43403 619 aa11.77□□□□□ -0.53
UBR4-216ENST00000494503 HERVK_113P62684 666 aa11.77□□□□□ -0.53
UBR4-216ENST00000494503 DYNLL1P63167 89 aaKnown RBP11.77□□□□□ -0.53
UBR4-216ENST00000494503 SHROOM1Q2M3G4 852 aaPredicted RBP11.77□□□□□ -0.53
UBR4-216ENST00000494503 ADGRA1Q86SQ6 560 aa11.77□□□□□ -0.53
UBR4-216ENST00000494503 GPRC5AQ8NFJ5 357 aa11.77□□□□□ -0.53
UBR4-216ENST00000494503 NUDT12Q9BQG2 462 aa11.77□□□□□ -0.53
UBR4-216ENST00000494503 CCDC8Q9H0W5 538 aaPredicted RBP11.77□□□□□ -0.53
UBR4-216ENST00000494503 ZBTB21Q9ULJ3 1066 aa11.77□□□□□ -0.53
UBR4-216ENST00000494503 RPTORQ8N122 1335 aa11.77□□□□□ -0.53
UBR4-216ENST00000494503 CCER2I3L3R5 266 aa11.76□□□□□ -0.53
UBR4-216ENST00000494503 CYP2E1P05181 493 aaPredicted RBP11.76□□□□□ -0.53
UBR4-216ENST00000494503 PRKAR2AP13861 404 aaKnown RBP11.76□□□□□ -0.53
UBR4-216ENST00000494503 ZKSCAN1P17029 563 aaPredicted RBP11.76□□□□□ -0.53
UBR4-216ENST00000494503 SYN1P17600 705 aa11.76□□□□□ -0.53
UBR4-216ENST00000494503 RAB3GAP1Q15042 981 aa11.76□□□□□ -0.53
UBR4-216ENST00000494503 TRIB2Q92519 343 aa11.76□□□□□ -0.53
UBR4-216ENST00000494503 P2RX7Q99572 595 aaKnown RBP11.76□□□□□ -0.53
UBR4-216ENST00000494503 NBPF3Q9H094 633 aa11.76□□□□□ -0.53
UBR4-216ENST00000494503 PIH1D3Q9NQM4 214 aaKnown RBP11.76□□□□□ -0.53
UBR4-216ENST00000494503 PLXNB2O15031 1838 aa11.75□□□□□ -0.53
UBR4-216ENST00000494503 C19orf81C9J6K1 198 aa11.75□□□□□ -0.53
UBR4-216ENST00000494503 GH2P01242 217 aa11.75□□□□□ -0.53
UBR4-216ENST00000494503 SH3D19Q5HYK7 790 aa11.75□□□□□ -0.53
UBR4-216ENST00000494503 FOXP4Q8IVH2 680 aaPredicted RBP11.75□□□□□ -0.53
UBR4-216ENST00000494503 MAGEB6Q8N7X4 407 aa11.75□□□□□ -0.53
UBR4-216ENST00000494503 SOCS4Q8WXH5 440 aa11.75□□□□□ -0.53
UBR4-216ENST00000494503 WDR18Q9BV38 432 aa11.75□□□□□ -0.53
UBR4-216ENST00000494503 CRISPLD2Q9H0B8 497 aa11.75□□□□□ -0.53
UBR4-216ENST00000494503 C11orf49Q9H6J7 331 aa11.75□□□□□ -0.53
UBR4-216ENST00000494503 DNAJC18Q9H819 358 aa11.75□□□□□ -0.53
UBR4-216ENST00000494503 TLR7Q9NYK1 1049 aaKnown RBP11.75□□□□□ -0.53
UBR4-216ENST00000494503 NDUFB9Q9Y6M9 179 aa11.75□□□□□ -0.53
UBR4-216ENST00000494503 CAPN2P17655 700 aa11.74□□□□□ -0.53
UBR4-216ENST00000494503 MAPK4P31152 587 aa11.74□□□□□ -0.53
UBR4-216ENST00000494503 ERVK-9P63128 1117 aa11.74□□□□□ -0.53
UBR4-216ENST00000494503 ERVK-24P63145 666 aa11.74□□□□□ -0.53
UBR4-216ENST00000494503 JAG1P78504 1218 aa11.74□□□□□ -0.53
UBR4-216ENST00000494503 ATP8B2P98198 1209 aa11.74□□□□□ -0.53
UBR4-216ENST00000494503 HNRNPUQ00839 825 aaKnown RBP eCLIP11.74□□□□□ -0.53
UBR4-216ENST00000494503 USP17L2Q6R6M4 530 aa11.74□□□□□ -0.53
UBR4-216ENST00000494503 ANKLE1Q8NAG6 615 aa11.74□□□□□ -0.53
UBR4-216ENST00000494503 LRCH3Q96II8 777 aa11.74□□□□□ -0.53
UBR4-216ENST00000494503 TXNRD2Q9NNW7 524 aa11.74□□□□□ -0.53
UBR4-216ENST00000494503 GPR108Q9NPR9 543 aa11.74□□□□□ -0.53
UBR4-216ENST00000494503 MORF4L1Q9UBU8 362 aa11.74□□□□□ -0.53
UBR4-216ENST00000494503 DBNLQ9UJU6 430 aaKnown RBP11.74□□□□□ -0.53
UBR4-216ENST00000494503 GJD2Q9UKL4 321 aa11.74□□□□□ -0.53
UBR4-216ENST00000494503 APBB1O00213 710 aa11.73□□□□□ -0.53
UBR4-216ENST00000494503 MPHOSPH10O00566 681 aaKnown RBP11.73□□□□□ -0.53
UBR4-216ENST00000494503 RGS2P41220 211 aa11.73□□□□□ -0.53
UBR4-216ENST00000494503 PPP4CP60510 307 aa11.73□□□□□ -0.53
UBR4-216ENST00000494503 MAP3K12Q12852 859 aa11.73□□□□□ -0.53
UBR4-216ENST00000494503 POLA2Q14181 598 aa11.73□□□□□ -0.53
UBR4-216ENST00000494503 GPR142Q7Z601 462 aa11.73□□□□□ -0.53
UBR4-216ENST00000494503 PLEKHH3Q7Z736 793 aa11.73□□□□□ -0.53
UBR4-216ENST00000494503 AACSQ86V21 672 aa11.73□□□□□ -0.53
UBR4-216ENST00000494503 SLC17A8Q8NDX2 589 aa11.73□□□□□ -0.53
UBR4-216ENST00000494503 NAV1Q8NEY1 1877 aa11.73□□□□□ -0.53
UBR4-216ENST00000494503 SSH3Q8TE77 659 aa11.73□□□□□ -0.53
UBR4-216ENST00000494503 PORCNQ9H237 461 aa11.73□□□□□ -0.53
UBR4-216ENST00000494503 CABP5Q9NP86 173 aa11.73□□□□□ -0.53
UBR4-216ENST00000494503 LAMA3Q16787 3333 aa11.73□□□□□ -0.53
UBR4-216ENST00000494503 MYH8P13535 1937 aa11.72□□□□□ -0.53
UBR4-216ENST00000494503 SOX1O00570 391 aaPredicted RBP11.72□□□□□ -0.53
UBR4-216ENST00000494503 GLRX3O76003 335 aaKnown RBP11.72□□□□□ -0.53
UBR4-216ENST00000494503 POLR3DP05423 398 aaPredicted RBP11.72□□□□□ -0.53
UBR4-216ENST00000494503 CNGA1P29973 690 aa11.72□□□□□ -0.53
UBR4-216ENST00000494503 HOXA7P31268 230 aaPredicted RBP11.72□□□□□ -0.53
UBR4-216ENST00000494503 CCNA1P78396 465 aa11.72□□□□□ -0.53
UBR4-216ENST00000494503 CCL14Q16627 93 aa11.72□□□□□ -0.53
UBR4-216ENST00000494503 ABCB5Q2M3G0 1257 aa11.72□□□□□ -0.53
UBR4-216ENST00000494503 CERKLQ49MI3 558 aaPredicted RBP11.72□□□□□ -0.53
UBR4-216ENST00000494503 SAMD1Q6SPF0 538 aaPredicted RBP11.72□□□□□ -0.53
UBR4-216ENST00000494503 TRMT44Q8IYL2 757 aaKnown RBP11.72□□□□□ -0.53
UBR4-216ENST00000494503 GTF3C2Q8WUA4 911 aaPredicted RBP11.72□□□□□ -0.53
UBR4-216ENST00000494503 APBA2Q99767 749 aa11.72□□□□□ -0.53
UBR4-216ENST00000494503 GINM1Q9NU53 330 aa11.72□□□□□ -0.53
UBR4-216ENST00000494503 SERPINB13Q9UIV8 391 aa11.72□□□□□ -0.53
UBR4-216ENST00000494503 EXOC6BQ9Y2D4 811 aa11.72□□□□□ -0.53
UBR4-216ENST00000494503 IVNS1ABPQ9Y6Y0 642 aa11.72□□□□□ -0.53
UBR4-216ENST00000494503 A0A1W2PPC1 479 aa11.71□□□□□ -0.53
UBR4-216ENST00000494503 USP17L15C9J2P7 530 aa11.71□□□□□ -0.53
UBR4-216ENST00000494503 USP17L13C9JLJ4 530 aa11.71□□□□□ -0.53
UBR4-216ENST00000494503 USP17L11C9JVI0 530 aa11.71□□□□□ -0.53
UBR4-216ENST00000494503 USP17L18D6R9N7 530 aa11.71□□□□□ -0.53
UBR4-216ENST00000494503 USP17L22D6RA61 530 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms