RNA–Protein interactions for RNA: ENST00000490851.5

HDAC9-225, Transcript of histone deacetylase 9, humanhuman

TSL 2

Gene HDAC9, Length 2,419 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-225ENST00000490851 GPR75-ASB3A0A0A6YYF3 556 aa11.74□□□□□ -0.53
HDAC9-225ENST00000490851 UBE2Q2LH0YL09 131 aa11.74□□□□□ -0.53
HDAC9-225ENST00000490851 PLCD1P51178 756 aa11.74□□□□□ -0.53
HDAC9-225ENST00000490851 PPP4CP60510 307 aa11.74□□□□□ -0.53
HDAC9-225ENST00000490851 KIAA0825Q8IV33 1275 aa11.74□□□□□ -0.53
HDAC9-225ENST00000490851 SLF2Q8IX21 1173 aa11.74□□□□□ -0.53
HDAC9-225ENST00000490851 AMOTL1Q8IY63 956 aa11.74□□□□□ -0.53
HDAC9-225ENST00000490851 LAMB1P07942 1786 aa11.73□□□□□ -0.53
HDAC9-225ENST00000490851 TSPY2A6NKD2 308 aa11.73□□□□□ -0.53
HDAC9-225ENST00000490851 CEBPZQ03701 1054 aaKnown RBP11.73□□□□□ -0.53
HDAC9-225ENST00000490851 PDE4BQ07343 736 aa11.73□□□□□ -0.53
HDAC9-225ENST00000490851 IFIT1BQ5T764 474 aaKnown RBP11.73□□□□□ -0.53
HDAC9-225ENST00000490851 C12orf60Q5U649 245 aa11.73□□□□□ -0.53
HDAC9-225ENST00000490851 IQCA1Q86XH1 822 aa11.73□□□□□ -0.53
HDAC9-225ENST00000490851 ZNF654Q8IZM8 581 aa11.73□□□□□ -0.53
HDAC9-225ENST00000490851 MKRN1Q9UHC7 482 aaKnown RBP11.73□□□□□ -0.53
HDAC9-225ENST00000490851 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.73□□□□□ -0.53
HDAC9-225ENST00000490851 KIAA1551Q9HCM1 1747 aa11.73□□□□□ -0.53
HDAC9-225ENST00000490851 C10orf71Q711Q0 1435 aa11.73□□□□□ -0.53
HDAC9-225ENST00000490851 PPIP5K2O43314 1243 aa11.72□□□□□ -0.53
HDAC9-225ENST00000490851 RHBDL3P58872 404 aa11.72□□□□□ -0.53
HDAC9-225ENST00000490851 RESTQ13127 1097 aa11.72□□□□□ -0.53
HDAC9-225ENST00000490851 SBK1Q52WX2 424 aa11.72□□□□□ -0.53
HDAC9-225ENST00000490851 CPLX2Q6PUV4 134 aaKnown RBP11.72□□□□□ -0.53
HDAC9-225ENST00000490851 TTLL6Q8N841 843 aa11.72□□□□□ -0.53
HDAC9-225ENST00000490851 C7orf43Q8WVR3 580 aa11.72□□□□□ -0.53
HDAC9-225ENST00000490851 C8orf76Q96K31 380 aa11.72□□□□□ -0.53
HDAC9-225ENST00000490851 SLC26A6Q9BXS9 759 aa11.72□□□□□ -0.53
HDAC9-225ENST00000490851 MKNK2Q9HBH9 465 aa11.72□□□□□ -0.53
HDAC9-225ENST00000490851 RRAGDQ9NQL2 400 aaPredicted RBP11.72□□□□□ -0.53
HDAC9-225ENST00000490851 FAM217BQ9NTX9 383 aaPredicted RBP11.72□□□□□ -0.53
HDAC9-225ENST00000490851 NAV1Q8NEY1 1877 aa11.72□□□□□ -0.53
HDAC9-225ENST00000490851 ADAMTSL1Q8N6G6 1762 aa11.72□□□□□ -0.53
HDAC9-225ENST00000490851 FLT1P17948 1338 aa11.72□□□□□ -0.53
HDAC9-225ENST00000490851 KRT85P78386 507 aa11.72□□□□□ -0.53
HDAC9-225ENST00000490851 MAPK8IP2Q13387 824 aaPredicted RBP11.72□□□□□ -0.53
HDAC9-225ENST00000490851 SEC23AQ15436 765 aa11.72□□□□□ -0.53
HDAC9-225ENST00000490851 RTN1Q16799 776 aa11.72□□□□□ -0.53
HDAC9-225ENST00000490851 DNTTIP2Q5QJE6 756 aaKnown RBP11.72□□□□□ -0.53
HDAC9-225ENST00000490851 TMTC2Q8N394 836 aa11.72□□□□□ -0.53
HDAC9-225ENST00000490851 PCDHAC2Q9Y5I4 1007 aa11.72□□□□□ -0.53
HDAC9-225ENST00000490851 GAKO14976 1311 aa11.72□□□□□ -0.53
HDAC9-225ENST00000490851 ORC4O43929 436 aa11.71□□□□□ -0.53
HDAC9-225ENST00000490851 CDKL5O76039 1030 aa11.71□□□□□ -0.53
HDAC9-225ENST00000490851 PLCG2P16885 1265 aa11.71□□□□□ -0.53
HDAC9-225ENST00000490851 IARSP41252 1262 aaKnown RBP11.71□□□□□ -0.53
HDAC9-225ENST00000490851 RBM5P52756 815 aaKnown RBP eCLIP11.71□□□□□ -0.53
HDAC9-225ENST00000490851 R3HDM1Q15032 1099 aaKnown RBP11.71□□□□□ -0.53
HDAC9-225ENST00000490851 PODNQ7Z5L7 613 aa11.71□□□□□ -0.53
HDAC9-225ENST00000490851 ZHX1Q9UKY1 873 aaPredicted RBP11.71□□□□□ -0.53
HDAC9-225ENST00000490851 MTMR7Q9Y216 660 aa11.71□□□□□ -0.53
HDAC9-225ENST00000490851 SRCAPQ6ZRS2 3230 aa11.71□□□□□ -0.53
HDAC9-225ENST00000490851 TFAP4Q01664 338 aa11.71□□□□□ -0.54
HDAC9-225ENST00000490851 ALG1Q9BT22 464 aa11.71□□□□□ -0.54
HDAC9-225ENST00000490851 FTOQ9C0B1 505 aaKnown RBP eCLIP11.71□□□□□ -0.54
HDAC9-225ENST00000490851 USP40Q9NVE5 1235 aa11.71□□□□□ -0.54
HDAC9-225ENST00000490851 SCN9AQ15858 1988 aa11.71□□□□□ -0.54
HDAC9-225ENST00000490851 CDK5RAP2Q96SN8 1893 aa11.71□□□□□ -0.54
HDAC9-225ENST00000490851 FGRP09769 529 aa11.7□□□□□ -0.54
HDAC9-225ENST00000490851 PCP11498 1178 aaKnown RBP11.7□□□□□ -0.54
HDAC9-225ENST00000490851 CATIPQ7Z7H3 387 aa11.7□□□□□ -0.54
HDAC9-225ENST00000490851 SLC16A10Q8TF71 515 aa11.7□□□□□ -0.54
HDAC9-225ENST00000490851 FAM163AQ96GL9 167 aaPredicted RBP11.7□□□□□ -0.54
HDAC9-225ENST00000490851 ZNF277Q9NRM2 450 aaPredicted RBP11.7□□□□□ -0.54
HDAC9-225ENST00000490851 TMEM63CQ9P1W3 806 aa11.7□□□□□ -0.54
HDAC9-225ENST00000490851 hCG_1642624A0A1W2PR95 340 aa11.7□□□□□ -0.54
HDAC9-225ENST00000490851 USP17L3A6NCW0 530 aa11.7□□□□□ -0.54
HDAC9-225ENST00000490851 USP17L4A6NCW7 530 aa11.7□□□□□ -0.54
HDAC9-225ENST00000490851 MBD3O95983 291 aa11.7□□□□□ -0.54
HDAC9-225ENST00000490851 CACNB3P54284 484 aa11.7□□□□□ -0.54
HDAC9-225ENST00000490851 SSRP1Q08945 709 aaKnown RBP11.7□□□□□ -0.54
HDAC9-225ENST00000490851 NTRK3Q16288 839 aa11.7□□□□□ -0.54
HDAC9-225ENST00000490851 ZSCAN23Q3MJ62 389 aa11.7□□□□□ -0.54
HDAC9-225ENST00000490851 USP17L1Q7RTZ2 530 aa11.7□□□□□ -0.54
HDAC9-225ENST00000490851 TTC6Q86TZ1 520 aa11.7□□□□□ -0.54
HDAC9-225ENST00000490851 FANCBQ8NB91 859 aa11.7□□□□□ -0.54
HDAC9-225ENST00000490851 TEKT1Q969V4 418 aa11.7□□□□□ -0.54
HDAC9-225ENST00000490851 SPATA32Q96LK8 384 aa11.7□□□□□ -0.54
HDAC9-225ENST00000490851 PSDA5PKW4 1024 aaPredicted RBP11.69□□□□□ -0.54
HDAC9-225ENST00000490851 GOLGA6L3A6NEY3 463 aa11.69□□□□□ -0.54
HDAC9-225ENST00000490851 KCNA3P22001 575 aa11.69□□□□□ -0.54
HDAC9-225ENST00000490851 GUCY1A2P33402 732 aa11.69□□□□□ -0.54
HDAC9-225ENST00000490851 CRKP46108 304 aa11.69□□□□□ -0.54
HDAC9-225ENST00000490851 KIAA2012Q0VF49 1180 aa11.69□□□□□ -0.54
HDAC9-225ENST00000490851 CCDC93Q567U6 631 aa11.69□□□□□ -0.54
HDAC9-225ENST00000490851 DACT2Q5SW24 774 aa11.69□□□□□ -0.54
HDAC9-225ENST00000490851 ZNF444Q8N0Y2 327 aaPredicted RBP11.69□□□□□ -0.54
HDAC9-225ENST00000490851 TMEM87AQ8NBN3 555 aa11.69□□□□□ -0.54
HDAC9-225ENST00000490851 DDX4Q9NQI0 724 aaKnown RBP11.69□□□□□ -0.54
HDAC9-225ENST00000490851 TSPY3P0CV98 308 aa11.69□□□□□ -0.54
HDAC9-225ENST00000490851 TSPY8P0CW00 308 aa11.69□□□□□ -0.54
HDAC9-225ENST00000490851 STRIP1Q5VSL9 837 aa11.69□□□□□ -0.54
HDAC9-225ENST00000490851 FBXO18Q8NFZ0 1043 aa11.69□□□□□ -0.54
HDAC9-225ENST00000490851 PIBF1Q8WXW3 757 aa11.69□□□□□ -0.54
HDAC9-225ENST00000490851 ZSCAN16Q9H4T2 348 aaPredicted RBP11.69□□□□□ -0.54
HDAC9-225ENST00000490851 SUGT1Q9Y2Z0 365 aa11.69□□□□□ -0.54
HDAC9-225ENST00000490851 PLEKHA8P1O95397 391 aa11.68□□□□□ -0.54
HDAC9-225ENST00000490851 POLD1P28340 1107 aa11.68□□□□□ -0.54
HDAC9-225ENST00000490851 UBE2HP62256 183 aa11.68□□□□□ -0.54
HDAC9-225ENST00000490851 CSPP1Q1MSJ5 1256 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms