RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 SHTN1A0MZ66 631 aa13.47□□□□□ -0.25
C9orf3-220ENST00000489318 DDTLA6NHG4 134 aaPredicted RBP13.47□□□□□ -0.25
C9orf3-220ENST00000489318 MYO1BO43795 1136 aa13.47□□□□□ -0.25
C9orf3-220ENST00000489318 SHMT1P34896 483 aa13.47□□□□□ -0.25
C9orf3-220ENST00000489318 RAB3GAP1Q15042 981 aa13.47□□□□□ -0.25
C9orf3-220ENST00000489318 SLC4A8Q2Y0W8 1093 aa13.47□□□□□ -0.25
C9orf3-220ENST00000489318 RCSD1Q6JBY9 416 aa13.47□□□□□ -0.25
C9orf3-220ENST00000489318 DGKHQ86XP1 1220 aa13.47□□□□□ -0.25
C9orf3-220ENST00000489318 NSUN7Q8NE18 718 aaKnown RBP13.47□□□□□ -0.25
C9orf3-220ENST00000489318 NEDD1Q8NHV4 660 aa13.47□□□□□ -0.25
C9orf3-220ENST00000489318 ZKSCAN3Q9BRR0 538 aa13.47□□□□□ -0.25
C9orf3-220ENST00000489318 MKNK2Q9HBH9 465 aa13.47□□□□□ -0.25
C9orf3-220ENST00000489318 IL17RBQ9NRM6 502 aa13.47□□□□□ -0.25
C9orf3-220ENST00000489318 PI4KBQ9UBF8 816 aa13.47□□□□□ -0.25
C9orf3-220ENST00000489318 SCN4AP35499 1836 aa13.47□□□□□ -0.25
C9orf3-220ENST00000489318 ATAD5Q96QE3 1844 aa13.47□□□□□ -0.25
C9orf3-220ENST00000489318 IGKV6D-41A0A0C4DH26 115 aa13.46□□□□□ -0.25
C9orf3-220ENST00000489318 CCDC69A6NI79 296 aa13.46□□□□□ -0.25
C9orf3-220ENST00000489318 ZBTB43O43298 467 aa13.46□□□□□ -0.25
C9orf3-220ENST00000489318 DHX16O60231 1041 aaKnown RBP13.46□□□□□ -0.25
C9orf3-220ENST00000489318 DDAH1O94760 285 aa13.46□□□□□ -0.25
C9orf3-220ENST00000489318 CTDNEP1O95476 244 aa13.46□□□□□ -0.25
C9orf3-220ENST00000489318 PDIA4P13667 645 aaKnown RBP13.46□□□□□ -0.25
C9orf3-220ENST00000489318 NUCB2P80303 420 aa13.46□□□□□ -0.25
C9orf3-220ENST00000489318 TFAP4Q01664 338 aa13.46□□□□□ -0.25
C9orf3-220ENST00000489318 STK3Q13188 491 aa13.46□□□□□ -0.25
C9orf3-220ENST00000489318 FAM47AQ5JRC9 791 aa13.46□□□□□ -0.25
C9orf3-220ENST00000489318 TATDN1Q6P1N9 297 aa13.46□□□□□ -0.25
C9orf3-220ENST00000489318 GPRC5DQ9NZD1 345 aa13.46□□□□□ -0.25
C9orf3-220ENST00000489318 RNF181Q9P0P0 153 aa13.46□□□□□ -0.25
C9orf3-220ENST00000489318 PGAP2Q9UHJ9 254 aa13.46□□□□□ -0.25
C9orf3-220ENST00000489318 CNOT7Q9UIV1 285 aaKnown RBP13.46□□□□□ -0.25
C9orf3-220ENST00000489318 SMC3Q9UQE7 1217 aa13.46□□□□□ -0.25
C9orf3-220ENST00000489318 SLC12A7Q9Y666 1083 aa13.46□□□□□ -0.25
C9orf3-220ENST00000489318 MYH6P13533 1939 aa13.46□□□□□ -0.25
C9orf3-220ENST00000489318 MYH15Q9Y2K3 1946 aa13.46□□□□□ -0.25
C9orf3-220ENST00000489318 PAPPA2Q9BXP8 1791 aa13.45□□□□□ -0.26
C9orf3-220ENST00000489318 WDR90Q96KV7 1748 aa13.45□□□□□ -0.26
C9orf3-220ENST00000489318 CLRN2A0PK11 232 aa13.45□□□□□ -0.26
C9orf3-220ENST00000489318 EGFRP00533 1210 aa13.45□□□□□ -0.26
C9orf3-220ENST00000489318 TSPY3P0CV98 308 aa13.45□□□□□ -0.26
C9orf3-220ENST00000489318 TSPY8P0CW00 308 aa13.45□□□□□ -0.26
C9orf3-220ENST00000489318 GJB2P29033 226 aa13.45□□□□□ -0.26
C9orf3-220ENST00000489318 METAP2P50579 478 aaKnown RBP eCLIP13.45□□□□□ -0.26
C9orf3-220ENST00000489318 HMGN5P82970 282 aaKnown RBP13.45□□□□□ -0.26
C9orf3-220ENST00000489318 TCP10Q12799 353 aa13.45□□□□□ -0.26
C9orf3-220ENST00000489318 PPP2R5BQ15173 497 aa13.45□□□□□ -0.26
C9orf3-220ENST00000489318 KIF4BQ2VIQ3 1234 aa13.45□□□□□ -0.26
C9orf3-220ENST00000489318 NBPF9Q3BBW0 867 aa13.45□□□□□ -0.26
C9orf3-220ENST00000489318 IFIT1BQ5T764 474 aaKnown RBP13.45□□□□□ -0.26
C9orf3-220ENST00000489318 FOXP4Q8IVH2 680 aaPredicted RBP13.45□□□□□ -0.26
C9orf3-220ENST00000489318 ZNF654Q8IZM8 581 aa13.45□□□□□ -0.26
C9orf3-220ENST00000489318 ZNF444Q8N0Y2 327 aaPredicted RBP13.45□□□□□ -0.26
C9orf3-220ENST00000489318 HERC5Q9UII4 1024 aaKnown RBP13.45□□□□□ -0.26
C9orf3-220ENST00000489318 GJA3Q9Y6H8 435 aa13.45□□□□□ -0.26
C9orf3-220ENST00000489318 GRIN3BO60391 1043 aa13.44□□□□□ -0.26
C9orf3-220ENST00000489318 NMT2O60551 498 aa13.44□□□□□ -0.26
C9orf3-220ENST00000489318 BRD1O95696 1058 aa13.44□□□□□ -0.26
C9orf3-220ENST00000489318 CALM1P0DP23 149 aa13.44□□□□□ -0.26
C9orf3-220ENST00000489318 CALM2P0DP24 149 aa13.44□□□□□ -0.26
C9orf3-220ENST00000489318 CALM3P0DP25 149 aa13.44□□□□□ -0.26
C9orf3-220ENST00000489318 TROAPQ12815 778 aa13.44□□□□□ -0.26
C9orf3-220ENST00000489318 TNFAIP1Q13829 316 aa13.44□□□□□ -0.26
C9orf3-220ENST00000489318 NTRK3Q16288 839 aa13.44□□□□□ -0.26
C9orf3-220ENST00000489318 C9orf131Q5VYM1 1079 aa13.44□□□□□ -0.26
C9orf3-220ENST00000489318 NFXL1Q6ZNB6 911 aa13.44□□□□□ -0.26
C9orf3-220ENST00000489318 MICU3Q86XE3 530 aa13.44□□□□□ -0.26
C9orf3-220ENST00000489318 RGS22Q8NE09 1264 aa13.44□□□□□ -0.26
C9orf3-220ENST00000489318 CCDC17Q96LX7 622 aa13.44□□□□□ -0.26
C9orf3-220ENST00000489318 MAP3K14Q99558 947 aa13.44□□□□□ -0.26
C9orf3-220ENST00000489318 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.44□□□□□ -0.26
C9orf3-220ENST00000489318 NCOA5Q9HCD5 579 aaKnown RBP13.44□□□□□ -0.26
C9orf3-220ENST00000489318 FAM217BQ9NTX9 383 aaPredicted RBP13.44□□□□□ -0.26
C9orf3-220ENST00000489318 STK36Q9NRP7 1315 aa13.43□□□□□ -0.26
C9orf3-220ENST00000489318 PTPDC1A2A3K4 754 aa13.43□□□□□ -0.26
C9orf3-220ENST00000489318 GOLGA8AA7E2F4 631 aa13.43□□□□□ -0.26
C9orf3-220ENST00000489318 TCP10L2B9ZVM9 353 aa13.43□□□□□ -0.26
C9orf3-220ENST00000489318 TBC1D12O60347 775 aa13.43□□□□□ -0.26
C9orf3-220ENST00000489318 CDC27P30260 824 aa13.43□□□□□ -0.26
C9orf3-220ENST00000489318 TNNI2P48788 182 aa13.43□□□□□ -0.26
C9orf3-220ENST00000489318 CCT2P78371 535 aaKnown RBP13.43□□□□□ -0.26
C9orf3-220ENST00000489318 MAP3K10Q02779 954 aa13.43□□□□□ -0.26
C9orf3-220ENST00000489318 PKP1Q13835 747 aa13.43□□□□□ -0.26
C9orf3-220ENST00000489318 DOCK1Q14185 1865 aa13.43□□□□□ -0.26
C9orf3-220ENST00000489318 SYNE3Q6ZMZ3 975 aa13.43□□□□□ -0.26
C9orf3-220ENST00000489318 L3MBTL3Q96JM7 780 aaPredicted RBP13.43□□□□□ -0.26
C9orf3-220ENST00000489318 CSRNP1Q96S65 589 aa13.43□□□□□ -0.26
C9orf3-220ENST00000489318 ZDHHC9Q9Y397 364 aa13.43□□□□□ -0.26
C9orf3-220ENST00000489318 H7C1D1 291 aa13.42□□□□□ -0.26
C9orf3-220ENST00000489318 JAK2O60674 1132 aa13.42□□□□□ -0.26
C9orf3-220ENST00000489318 CDKL5O76039 1030 aa13.42□□□□□ -0.26
C9orf3-220ENST00000489318 AKR1B1P15121 316 aa13.42□□□□□ -0.26
C9orf3-220ENST00000489318 PDCP20941 246 aa13.42□□□□□ -0.26
C9orf3-220ENST00000489318 SYT1P21579 422 aa13.42□□□□□ -0.26
C9orf3-220ENST00000489318 PPP4R3BQ5MIZ7 849 aa13.42□□□□□ -0.26
C9orf3-220ENST00000489318 CLEC17AQ6ZS10 378 aa13.42□□□□□ -0.26
C9orf3-220ENST00000489318 SAMD7Q7Z3H4 446 aa13.42□□□□□ -0.26
C9orf3-220ENST00000489318 CATIPQ7Z7H3 387 aa13.42□□□□□ -0.26
C9orf3-220ENST00000489318 CRACR2BQ8N4Y2 399 aaPredicted RBP13.42□□□□□ -0.26
C9orf3-220ENST00000489318 TEPSINQ96N21 525 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms