RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 TEPSINQ96N21 525 aa18.68■□□□□ 0.58
SYNE1-227ENST00000489156 LRRC2Q9BYS8 371 aa18.68■□□□□ 0.58
SYNE1-227ENST00000489156 DHX36Q9H2U1 1008 aaKnown RBP18.68■□□□□ 0.58
SYNE1-227ENST00000489156 ARPP21Q9UBL0 812 aaPredicted RBP18.68■□□□□ 0.58
SYNE1-227ENST00000489156 PFKFB2O60825 505 aa18.67■□□□□ 0.58
SYNE1-227ENST00000489156 SLURP2P0DP57 97 aa18.67■□□□□ 0.58
SYNE1-227ENST00000489156 ANTXR2P58335 489 aa18.67■□□□□ 0.58
SYNE1-227ENST00000489156 CTDSPL2Q05D32 466 aa18.67■□□□□ 0.58
SYNE1-227ENST00000489156 ST3GAL1Q11201 340 aa18.67■□□□□ 0.58
SYNE1-227ENST00000489156 C12orf60Q5U649 245 aa18.67■□□□□ 0.58
SYNE1-227ENST00000489156 CDC37L1Q7L3B6 337 aa18.67■□□□□ 0.58
SYNE1-227ENST00000489156 STK11IPQ8N1F8 1099 aa18.67■□□□□ 0.58
SYNE1-227ENST00000489156 GBP4Q96PP9 640 aa18.67■□□□□ 0.58
SYNE1-227ENST00000489156 CSRNP1Q96S65 589 aa18.67■□□□□ 0.58
SYNE1-227ENST00000489156 ATRNL1Q5VV63 1379 aa18.67■□□□□ 0.58
SYNE1-227ENST00000489156 NBPF12Q5TAG4 269 aaPredicted RBP18.67■□□□□ 0.58
SYNE1-227ENST00000489156 CHST3Q7LGC8 479 aa18.67■□□□□ 0.58
SYNE1-227ENST00000489156 TTC6Q86TZ1 520 aa18.67■□□□□ 0.58
SYNE1-227ENST00000489156 AMOTL1Q8IY63 956 aa18.67■□□□□ 0.58
SYNE1-227ENST00000489156 NECAB1Q8N987 351 aa18.67■□□□□ 0.58
SYNE1-227ENST00000489156 NEDD4P46934 1319 aa18.66■□□□□ 0.58
SYNE1-227ENST00000489156 B4E1Z4 1266 aa18.66■□□□□ 0.58
SYNE1-227ENST00000489156 HLA-DOAP06340 250 aa18.66■□□□□ 0.58
SYNE1-227ENST00000489156 FGRP09769 529 aa18.66■□□□□ 0.58
SYNE1-227ENST00000489156 NT5C2P49902 561 aa18.66■□□□□ 0.58
SYNE1-227ENST00000489156 LLPHQ9BRT6 129 aaKnown RBP18.66■□□□□ 0.58
SYNE1-227ENST00000489156 PI4KBQ9UBF8 816 aa18.66■□□□□ 0.58
SYNE1-227ENST00000489156 ANGEL1Q9UNK9 670 aaKnown RBP18.66■□□□□ 0.58
SYNE1-227ENST00000489156 PPP2R3BQ9Y5P8 575 aa18.66■□□□□ 0.58
SYNE1-227ENST00000489156 COL2A1P02458 1487 aaPredicted RBP18.66■□□□□ 0.58
SYNE1-227ENST00000489156 BRD1O95696 1058 aa18.65■□□□□ 0.58
SYNE1-227ENST00000489156 APOBRQ0VD83 1088 aa18.65■□□□□ 0.58
SYNE1-227ENST00000489156 CHADLQ6NUI6 762 aa18.65■□□□□ 0.58
SYNE1-227ENST00000489156 DYNLL2Q96FJ2 89 aa18.65■□□□□ 0.58
SYNE1-227ENST00000489156 ZSWIM5Q9P217 1185 aa18.65■□□□□ 0.58
SYNE1-227ENST00000489156 MYH8P13535 1937 aa18.65■□□□□ 0.58
SYNE1-227ENST00000489156 SLC3A2P08195 630 aaKnown RBP18.65■□□□□ 0.58
SYNE1-227ENST00000489156 PDIA3P30101 505 aaKnown RBP18.65■□□□□ 0.58
SYNE1-227ENST00000489156 FMR1Q06787 632 aaKnown RBP eCLIP18.65■□□□□ 0.58
SYNE1-227ENST00000489156 PKP1Q13835 747 aa18.65■□□□□ 0.58
SYNE1-227ENST00000489156 CYB5R4Q7L1T6 521 aa18.65■□□□□ 0.58
SYNE1-227ENST00000489156 WDR33Q9C0J8 1336 aaKnown RBP18.64■□□□□ 0.57
SYNE1-227ENST00000489156 FAM196BA6NMK8 535 aa18.64■□□□□ 0.57
SYNE1-227ENST00000489156 TRAF5O00463 557 aa18.64■□□□□ 0.57
SYNE1-227ENST00000489156 GJB2P29033 226 aa18.64■□□□□ 0.57
SYNE1-227ENST00000489156 MCM4P33991 863 aa18.64■□□□□ 0.57
SYNE1-227ENST00000489156 LIFRP42702 1097 aa18.64■□□□□ 0.57
SYNE1-227ENST00000489156 STK3Q13188 491 aa18.64■□□□□ 0.57
SYNE1-227ENST00000489156 MIGA2Q7L4E1 593 aa18.64■□□□□ 0.57
SYNE1-227ENST00000489156 IGDCC4Q8TDY8 1250 aa18.64■□□□□ 0.57
SYNE1-227ENST00000489156 ZDHHC9Q9Y397 364 aa18.64■□□□□ 0.57
SYNE1-227ENST00000489156 KDM4AO75164 1064 aa18.63■□□□□ 0.57
SYNE1-227ENST00000489156 PDCP20941 246 aa18.63■□□□□ 0.57
SYNE1-227ENST00000489156 SCRN1Q12765 414 aa18.63■□□□□ 0.57
SYNE1-227ENST00000489156 SART3Q15020 963 aaKnown RBP18.63■□□□□ 0.57
SYNE1-227ENST00000489156 ESR2Q92731 530 aa18.63■□□□□ 0.57
SYNE1-227ENST00000489156 CDCA5Q96FF9 252 aa18.63■□□□□ 0.57
SYNE1-227ENST00000489156 INCENPQ9NQS7 918 aa18.63■□□□□ 0.57
SYNE1-227ENST00000489156 SERPINB13Q9UIV8 391 aa18.63■□□□□ 0.57
SYNE1-227ENST00000489156 SH2B2O14492 632 aaPredicted RBP18.63■□□□□ 0.57
SYNE1-227ENST00000489156 DHX16O60231 1041 aaKnown RBP18.63■□□□□ 0.57
SYNE1-227ENST00000489156 SGMS1Q86VZ5 419 aa18.63■□□□□ 0.57
SYNE1-227ENST00000489156 FOXP4Q8IVH2 680 aaPredicted RBP18.63■□□□□ 0.57
SYNE1-227ENST00000489156 TMTC2Q8N394 836 aa18.63■□□□□ 0.57
SYNE1-227ENST00000489156 CRACR2BQ8N4Y2 399 aaPredicted RBP18.63■□□□□ 0.57
SYNE1-227ENST00000489156 SLC44A5Q8NCS7 719 aa18.63■□□□□ 0.57
SYNE1-227ENST00000489156 TACC3Q9Y6A5 838 aa18.63■□□□□ 0.57
SYNE1-227ENST00000489156 DDX11L8A8MPP1 907 aa18.62■□□□□ 0.57
SYNE1-227ENST00000489156 SYT1P21579 422 aa18.62■□□□□ 0.57
SYNE1-227ENST00000489156 GABPAQ06546 454 aa18.62■□□□□ 0.57
SYNE1-227ENST00000489156 SUPT20HL1Q3ZLR7 823 aa18.62■□□□□ 0.57
SYNE1-227ENST00000489156 EHD4Q9H223 541 aa18.62■□□□□ 0.57
SYNE1-227ENST00000489156 DNAJC18Q9H819 358 aa18.62■□□□□ 0.57
SYNE1-227ENST00000489156 FZD1Q9UP38 647 aa18.62■□□□□ 0.57
SYNE1-227ENST00000489156 STX6O43752 255 aa18.61■□□□□ 0.57
SYNE1-227ENST00000489156 ORC4O43929 436 aa18.61■□□□□ 0.57
SYNE1-227ENST00000489156 ITGBL1O95965 494 aaPredicted RBP18.61■□□□□ 0.57
SYNE1-227ENST00000489156 TRIM34Q9BYJ4 488 aa18.61■□□□□ 0.57
SYNE1-227ENST00000489156 XPO5Q9HAV4 1204 aaKnown RBP eCLIP18.61■□□□□ 0.57
SYNE1-227ENST00000489156 TOMM22Q9NS69 142 aa18.61■□□□□ 0.57
SYNE1-227ENST00000489156 SSC5DA1L4H1 1573 aa18.61■□□□□ 0.57
SYNE1-227ENST00000489156 KLF18A0A0U1RQI7 1052 aa18.6■□□□□ 0.57
SYNE1-227ENST00000489156 TOMM70O94826 608 aa18.6■□□□□ 0.57
SYNE1-227ENST00000489156 PTMSP20962 102 aa18.6■□□□□ 0.57
SYNE1-227ENST00000489156 CDK8P49336 464 aa18.6■□□□□ 0.57
SYNE1-227ENST00000489156 HMGN5P82970 282 aaKnown RBP18.6■□□□□ 0.57
SYNE1-227ENST00000489156 PDE4BQ07343 736 aa18.6■□□□□ 0.57
SYNE1-227ENST00000489156 PRKG1Q13976 671 aa18.6■□□□□ 0.57
SYNE1-227ENST00000489156 C16orf86Q6ZW13 317 aa18.6■□□□□ 0.57
SYNE1-227ENST00000489156 METTL16Q86W50 562 aaKnown RBP18.6■□□□□ 0.57
SYNE1-227ENST00000489156 SMARCC2Q8TAQ2 1214 aa18.6■□□□□ 0.57
SYNE1-227ENST00000489156 BRPF3Q9ULD4 1205 aa18.6■□□□□ 0.57
SYNE1-227ENST00000489156 ROBO3Q96MS0 1386 aa18.6■□□□□ 0.57
SYNE1-227ENST00000489156 ERICH2A1L162 156 aa18.6■□□□□ 0.57
SYNE1-227ENST00000489156 IFIT3O14879 490 aaKnown RBP18.6■□□□□ 0.57
SYNE1-227ENST00000489156 PRDM1O75626 825 aa18.6■□□□□ 0.57
SYNE1-227ENST00000489156 TMEM67Q5HYA8 995 aa18.6■□□□□ 0.57
SYNE1-227ENST00000489156 RRP12Q5JTH9 1297 aaKnown RBP18.6■□□□□ 0.57
SYNE1-227ENST00000489156 ZNF408Q9H9D4 720 aa18.6■□□□□ 0.57
SYNE1-227ENST00000489156 LY9Q9HBG7 655 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms