RNA–Protein interactions for RNA: ENST00000487984.1

SDC3-204, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 355 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-204ENST00000487984 MTFR1Q15390 333 aa14.94□□□□□ -0.02
SDC3-204ENST00000487984 DNAJC2Q99543 621 aaKnown RBP14.94□□□□□ -0.02
SDC3-204ENST00000487984 RIOK1Q9BRS2 568 aaKnown RBP14.94□□□□□ -0.02
SDC3-204ENST00000487984 ZBTB21Q9ULJ3 1066 aa14.94□□□□□ -0.02
SDC3-204ENST00000487984 TNPO2O14787 897 aaKnown RBP14.93□□□□□ -0.02
SDC3-204ENST00000487984 PABPC4Q13310 644 aaKnown RBP eCLIP14.93□□□□□ -0.02
SDC3-204ENST00000487984 FAM110CQ1W6H9 321 aa14.93□□□□□ -0.02
SDC3-204ENST00000487984 SLC9C2Q5TAH2 1124 aa14.93□□□□□ -0.02
SDC3-204ENST00000487984 ASCC2Q9H1I8 757 aaPredicted RBP14.93□□□□□ -0.02
SDC3-204ENST00000487984 GINM1Q9NU53 330 aa14.93□□□□□ -0.02
SDC3-204ENST00000487984 FOCADQ5VW36 1801 aa14.93□□□□□ -0.02
SDC3-204ENST00000487984 LOC285556D6RIA3 1793 aa14.93□□□□□ -0.02
SDC3-204ENST00000487984 CDK5RAP2Q96SN8 1893 aa14.93□□□□□ -0.02
SDC3-204ENST00000487984 MAGEB6P1A0A0J9YX57 407 aa14.92□□□□□ -0.02
SDC3-204ENST00000487984 FLT3LGP49771 235 aa14.92□□□□□ -0.02
SDC3-204ENST00000487984 TATDN1Q6P1N9 297 aa14.92□□□□□ -0.02
SDC3-204ENST00000487984 EDC3Q96F86 508 aaKnown RBP14.92□□□□□ -0.02
SDC3-204ENST00000487984 EHD4Q9H223 541 aa14.92□□□□□ -0.02
SDC3-204ENST00000487984 TMOD4Q9NZQ9 345 aa14.92□□□□□ -0.02
SDC3-204ENST00000487984 SERPINB13Q9UIV8 391 aa14.92□□□□□ -0.02
SDC3-204ENST00000487984 ATAD5Q96QE3 1844 aa14.92□□□□□ -0.02
SDC3-204ENST00000487984 ZNF532Q9HCE3 1301 aa14.92□□□□□ -0.02
SDC3-204ENST00000487984 TCRBV5S4A2TA0A5A2 114 aa14.91□□□□□ -0.02
SDC3-204ENST00000487984 USP17L10C9JJH3 530 aa14.91□□□□□ -0.02
SDC3-204ENST00000487984 GH2P01242 217 aa14.91□□□□□ -0.02
SDC3-204ENST00000487984 GCLCP48506 637 aaPredicted RBP14.91□□□□□ -0.02
SDC3-204ENST00000487984 TTC6Q86TZ1 520 aa14.91□□□□□ -0.02
SDC3-204ENST00000487984 SLAIN1Q8ND83 568 aa14.91□□□□□ -0.02
SDC3-204ENST00000487984 BOLA2Q9H3K6 86 aa14.91□□□□□ -0.02
SDC3-204ENST00000487984 BIN2Q9UBW5 565 aaPredicted RBP14.91□□□□□ -0.02
SDC3-204ENST00000487984 C19orf81C9J6K1 198 aa14.9□□□□□ -0.02
SDC3-204ENST00000487984 ADCY3O60266 1144 aa14.9□□□□□ -0.02
SDC3-204ENST00000487984 CENPBP07199 599 aaPredicted RBP14.9□□□□□ -0.02
SDC3-204ENST00000487984 CCL5P13501 91 aa14.9□□□□□ -0.02
SDC3-204ENST00000487984 ATP5JP18859 108 aa14.9□□□□□ -0.02
SDC3-204ENST00000487984 HOXA7P31268 230 aaPredicted RBP14.9□□□□□ -0.02
SDC3-204ENST00000487984 PLCD1P51178 756 aa14.9□□□□□ -0.02
SDC3-204ENST00000487984 UBXN2AP68543 259 aa14.9□□□□□ -0.02
SDC3-204ENST00000487984 IRX3P78415 501 aaPredicted RBP14.9□□□□□ -0.02
SDC3-204ENST00000487984 SHISA4Q96DD7 197 aa14.9□□□□□ -0.02
SDC3-204ENST00000487984 CRNKL1Q9BZJ0 848 aaKnown RBP14.9□□□□□ -0.02
SDC3-204ENST00000487984 PAG1Q9NWQ8 432 aa14.9□□□□□ -0.02
SDC3-204ENST00000487984 ELNP15502 786 aa14.89□□□□□ -0.03
SDC3-204ENST00000487984 SHMT1P34896 483 aa14.89□□□□□ -0.03
SDC3-204ENST00000487984 IRF5Q13568 498 aa14.89□□□□□ -0.03
SDC3-204ENST00000487984 LCORLQ8N3X6 602 aa14.89□□□□□ -0.03
SDC3-204ENST00000487984 COA7Q96BR5 231 aa14.89□□□□□ -0.03
SDC3-204ENST00000487984 P2RX7Q99572 595 aaKnown RBP14.89□□□□□ -0.03
SDC3-204ENST00000487984 HAUS7Q99871 368 aa14.89□□□□□ -0.03
SDC3-204ENST00000487984 LRRCC1Q9C099 1032 aa14.89□□□□□ -0.03
SDC3-204ENST00000487984 RNF208Q9H0X6 261 aa14.89□□□□□ -0.03
SDC3-204ENST00000487984 EMILIN3Q9NT22 766 aa14.89□□□□□ -0.03
SDC3-204ENST00000487984 SMARCA5O60264 1052 aaPredicted RBP14.88□□□□□ -0.03
SDC3-204ENST00000487984 POLR3DP05423 398 aaPredicted RBP14.88□□□□□ -0.03
SDC3-204ENST00000487984 GJB1P08034 283 aa14.88□□□□□ -0.03
SDC3-204ENST00000487984 EVX2Q03828 476 aa14.88□□□□□ -0.03
SDC3-204ENST00000487984 RAB3GAP1Q15042 981 aa14.88□□□□□ -0.03
SDC3-204ENST00000487984 SLFNL1Q499Z3 407 aa14.88□□□□□ -0.03
SDC3-204ENST00000487984 CERKLQ49MI3 558 aaPredicted RBP14.88□□□□□ -0.03
SDC3-204ENST00000487984 PXYLP1Q8TE99 480 aa14.88□□□□□ -0.03
SDC3-204ENST00000487984 SDR42E1Q8WUS8 393 aa14.88□□□□□ -0.03
SDC3-204ENST00000487984 UNC93B1Q9H1C4 597 aa14.88□□□□□ -0.03
SDC3-204ENST00000487984 MCM9Q9NXL9 1143 aa14.88□□□□□ -0.03
SDC3-204ENST00000487984 MORF4L1Q9UBU8 362 aa14.88□□□□□ -0.03
SDC3-204ENST00000487984 TAOK2Q9UL54 1235 aa14.88□□□□□ -0.03
SDC3-204ENST00000487984 MGAMO43451 1857 aa14.87□□□□□ -0.03
SDC3-204ENST00000487984 DDX60LQ5H9U9 1706 aaKnown RBP14.87□□□□□ -0.03
SDC3-204ENST00000487984 PEX10O60683 326 aa14.87□□□□□ -0.03
SDC3-204ENST00000487984 INHAP05111 366 aa14.87□□□□□ -0.03
SDC3-204ENST00000487984 ADD2P35612 726 aa14.87□□□□□ -0.03
SDC3-204ENST00000487984 GJA8P48165 433 aa14.87□□□□□ -0.03
SDC3-204ENST00000487984 HERVK_113P62684 666 aa14.87□□□□□ -0.03
SDC3-204ENST00000487984 GABPAQ06546 454 aa14.87□□□□□ -0.03
SDC3-204ENST00000487984 ZYXQ15942 572 aaKnown RBP14.87□□□□□ -0.03
SDC3-204ENST00000487984 ABCB5Q2M3G0 1257 aa14.87□□□□□ -0.03
SDC3-204ENST00000487984 USP17L2Q6R6M4 530 aa14.87□□□□□ -0.03
SDC3-204ENST00000487984 NKX2-3Q8TAU0 364 aa14.87□□□□□ -0.03
SDC3-204ENST00000487984 FEZ1Q99689 392 aa14.87□□□□□ -0.03
SDC3-204ENST00000487984 ARMT1Q9H993 441 aa14.87□□□□□ -0.03
SDC3-204ENST00000487984 TXNRD2Q9NNW7 524 aa14.87□□□□□ -0.03
SDC3-204ENST00000487984 DCP1AQ9NPI6 582 aaPredicted RBP14.87□□□□□ -0.03
SDC3-204ENST00000487984 MYH1P12882 1939 aa14.87□□□□□ -0.03
SDC3-204ENST00000487984 MBD4O95243 580 aa14.86□□□□□ -0.03
SDC3-204ENST00000487984 CHGBP05060 677 aa14.86□□□□□ -0.03
SDC3-204ENST00000487984 CYP2D6P10635 497 aa14.86□□□□□ -0.03
SDC3-204ENST00000487984 ACER1Q8TDN7 264 aa14.86□□□□□ -0.03
SDC3-204ENST00000487984 C12orf42Q96LP6 360 aa14.86□□□□□ -0.03
SDC3-204ENST00000487984 DDX24Q9GZR7 859 aaKnown RBP eCLIP14.86□□□□□ -0.03
SDC3-204ENST00000487984 CABP5Q9NP86 173 aa14.86□□□□□ -0.03
SDC3-204ENST00000487984 GJD2Q9UKL4 321 aa14.86□□□□□ -0.03
SDC3-204ENST00000487984 PRKAB2O43741 272 aa14.85□□□□□ -0.03
SDC3-204ENST00000487984 GUCY1A2P33402 732 aa14.85□□□□□ -0.03
SDC3-204ENST00000487984 POTEEQ6S8J3 1075 aa14.85□□□□□ -0.03
SDC3-204ENST00000487984 GPRC5AQ8NFJ5 357 aa14.85□□□□□ -0.03
SDC3-204ENST00000487984 U2AF1L4Q8WU68 220 aaKnown RBP14.85□□□□□ -0.03
SDC3-204ENST00000487984 KIAA1683Q9H0B3 1180 aa14.85□□□□□ -0.03
SDC3-204ENST00000487984 RBPJLQ9UBG7 517 aa14.85□□□□□ -0.03
SDC3-204ENST00000487984 VCAM1P19320 739 aa14.84□□□□□ -0.03
SDC3-204ENST00000487984 USP14P54578 494 aa14.84□□□□□ -0.03
SDC3-204ENST00000487984 SEPT2Q15019 361 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms