RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 PRDM1O75626 825 aa20.57■□□□□ 0.88
VIM-206ENST00000487938 ADAMTS2O95450 1211 aa20.57■□□□□ 0.88
VIM-206ENST00000487938 KCNJ6P48051 423 aa20.57■□□□□ 0.88
VIM-206ENST00000487938 SEC23AQ15436 765 aa20.57■□□□□ 0.88
VIM-206ENST00000487938 KMT5BQ4FZB7 885 aa20.57■□□□□ 0.88
VIM-206ENST00000487938 LRRN4CLQ8ND94 238 aa20.57■□□□□ 0.88
VIM-206ENST00000487938 SMARCE1Q969G3 411 aa20.57■□□□□ 0.88
VIM-206ENST00000487938 SRPRBQ9Y5M8 271 aaKnown RBP20.57■□□□□ 0.88
VIM-206ENST00000487938 TIAM2Q8IVF5 1701 aa20.57■□□□□ 0.88
VIM-206ENST00000487938 CDK11BP21127 795 aaKnown RBP20.56■□□□□ 0.88
VIM-206ENST00000487938 ESR2Q92731 530 aa20.56■□□□□ 0.88
VIM-206ENST00000487938 OGFRQ9NZT2 677 aa20.56■□□□□ 0.88
VIM-206ENST00000487938 AKAP17AQ02040 695 aaKnown RBP20.56■□□□□ 0.88
VIM-206ENST00000487938 DDB1Q16531 1140 aa20.56■□□□□ 0.88
VIM-206ENST00000487938 EARS2Q5JPH6 523 aaKnown RBP20.56■□□□□ 0.88
VIM-206ENST00000487938 PKNOX2Q96KN3 472 aa20.56■□□□□ 0.88
VIM-206ENST00000487938 TMX1Q9H3N1 280 aa20.56■□□□□ 0.88
VIM-206ENST00000487938 NFE2L3Q9Y4A8 694 aa20.56■□□□□ 0.88
VIM-206ENST00000487938 COL4A1P02462 1669 aa20.55■□□□□ 0.88
VIM-206ENST00000487938 SPATA31A1Q5TZJ5 1347 aa20.55■□□□□ 0.88
VIM-206ENST00000487938 SARSP49591 514 aaKnown RBP20.55■□□□□ 0.88
VIM-206ENST00000487938 C3orf67Q6ZVT6 689 aa20.55■□□□□ 0.88
VIM-206ENST00000487938 ELOA2Q8IYF1 753 aaPredicted RBP20.55■□□□□ 0.88
VIM-206ENST00000487938 DNAI1Q9UI46 699 aa20.55■□□□□ 0.88
VIM-206ENST00000487938 BCORQ6W2J9 1755 aa20.55■□□□□ 0.88
VIM-206ENST00000487938 ENAHQ8N8S7 591 aaPredicted RBP20.55■□□□□ 0.88
VIM-206ENST00000487938 THRAP3Q9Y2W1 955 aaKnown RBP20.55■□□□□ 0.88
VIM-206ENST00000487938 DOT1LQ8TEK3 1739 aa20.54■□□□□ 0.88
VIM-206ENST00000487938 DMTNQ08495 405 aa20.54■□□□□ 0.88
VIM-206ENST00000487938 MORC3Q14149 939 aa20.54■□□□□ 0.88
VIM-206ENST00000487938 ZNF579Q8NAF0 562 aaKnown RBP20.54■□□□□ 0.88
VIM-206ENST00000487938 ZNF397Q8NF99 534 aaPredicted RBP20.54■□□□□ 0.88
VIM-206ENST00000487938 ZSCAN10Q96SZ4 725 aaPredicted RBP20.54■□□□□ 0.88
VIM-206ENST00000487938 MTA3Q9BTC8 594 aa20.54■□□□□ 0.88
VIM-206ENST00000487938 L2HGDHQ9H9P8 463 aa20.54■□□□□ 0.88
VIM-206ENST00000487938 DDX41Q9UJV9 622 aaKnown RBP20.54■□□□□ 0.88
VIM-206ENST00000487938 CEP131Q9UPN4 1083 aa20.54■□□□□ 0.88
VIM-206ENST00000487938 V9GY48 417 aaPredicted RBP20.54■□□□□ 0.88
VIM-206ENST00000487938 ACTN4O43707 911 aaKnown RBP20.53■□□□□ 0.88
VIM-206ENST00000487938 PLEKHA8P1O95397 391 aa20.53■□□□□ 0.88
VIM-206ENST00000487938 PKN1Q16512 942 aa20.53■□□□□ 0.88
VIM-206ENST00000487938 ERCC6LQ2NKX8 1250 aa20.53■□□□□ 0.88
VIM-206ENST00000487938 ERFEQ4G0M1 354 aa20.53■□□□□ 0.88
VIM-206ENST00000487938 NT5DC1Q5TFE4 455 aa20.53■□□□□ 0.88
VIM-206ENST00000487938 FBXO38Q6PIJ6 1188 aa20.53■□□□□ 0.88
VIM-206ENST00000487938 MED15Q96RN5 788 aa20.53■□□□□ 0.88
VIM-206ENST00000487938 RIOK1Q9BRS2 568 aaKnown RBP20.53■□□□□ 0.88
VIM-206ENST00000487938 ETF1P62495 437 aaKnown RBP20.53■□□□□ 0.88
VIM-206ENST00000487938 CCDC93Q567U6 631 aa20.53■□□□□ 0.88
VIM-206ENST00000487938 MLKLQ8NB16 471 aa20.53■□□□□ 0.88
VIM-206ENST00000487938 EPSTI1Q96J88 318 aa20.53■□□□□ 0.88
VIM-206ENST00000487938 CDC5LQ99459 802 aaKnown RBP20.53■□□□□ 0.88
VIM-206ENST00000487938 RNF26Q9BY78 433 aaPredicted RBP20.53■□□□□ 0.88
VIM-206ENST00000487938 SAMSN1Q9NSI8 373 aaKnown RBP20.53■□□□□ 0.88
VIM-206ENST00000487938 ANAPC4Q9UJX5 808 aa20.53■□□□□ 0.88
VIM-206ENST00000487938 WNK3Q9BYP7 1800 aa20.53■□□□□ 0.88
VIM-206ENST00000487938 IGSF3O75054 1194 aa20.52■□□□□ 0.88
VIM-206ENST00000487938 AFMP43652 599 aa20.52■□□□□ 0.88
VIM-206ENST00000487938 EVX2Q03828 476 aa20.52■□□□□ 0.88
VIM-206ENST00000487938 IFIT1BQ5T764 474 aaKnown RBP20.52■□□□□ 0.88
VIM-206ENST00000487938 TRIM65Q6PJ69 517 aa20.52■□□□□ 0.88
VIM-206ENST00000487938 ANKRD18AQ8IVF6 992 aa20.52■□□□□ 0.88
VIM-206ENST00000487938 REXO1L1PQ8IX06 675 aa20.52■□□□□ 0.88
VIM-206ENST00000487938 FAM177A1Q8N128 213 aaPredicted RBP20.52■□□□□ 0.88
VIM-206ENST00000487938 MARCH10Q8NA82 808 aaPredicted RBP20.52■□□□□ 0.88
VIM-206ENST00000487938 DHX58Q96C10 678 aa20.52■□□□□ 0.88
VIM-206ENST00000487938 GNL3LQ9NVN8 582 aaKnown RBP20.52■□□□□ 0.88
VIM-206ENST00000487938 A0A087X0B3 334 aa20.52■□□□□ 0.88
VIM-206ENST00000487938 WNT7AO00755 349 aa20.52■□□□□ 0.88
VIM-206ENST00000487938 MYO1BO43795 1136 aa20.52■□□□□ 0.88
VIM-206ENST00000487938 CASP1P29466 404 aa20.52■□□□□ 0.88
VIM-206ENST00000487938 ADKP55263 362 aaKnown RBP20.52■□□□□ 0.88
VIM-206ENST00000487938 NOM1Q5C9Z4 860 aaKnown RBP20.52■□□□□ 0.88
VIM-206ENST00000487938 TRIM75PA6NK02 468 aa20.51■□□□□ 0.87
VIM-206ENST00000487938 RCAN1P53805 252 aa20.51■□□□□ 0.87
VIM-206ENST00000487938 TMEM139Q8IV31 216 aa20.51■□□□□ 0.87
VIM-206ENST00000487938 ENOX1Q8TC92 643 aaKnown RBP20.51■□□□□ 0.87
VIM-206ENST00000487938 RTL9Q8NET4 1388 aa20.51■□□□□ 0.87
VIM-206ENST00000487938 ZNF804BA4D1E1 1349 aa20.51■□□□□ 0.87
VIM-206ENST00000487938 MYH14Q7Z406 1995 aaKnown RBP20.51■□□□□ 0.87
VIM-206ENST00000487938 CCP110O43303 1012 aa20.51■□□□□ 0.87
VIM-206ENST00000487938 ZNF18P17022 549 aa20.51■□□□□ 0.87
VIM-206ENST00000487938 XBP1P17861 261 aa20.51■□□□□ 0.87
VIM-206ENST00000487938 KRT2P35908 639 aa20.51■□□□□ 0.87
VIM-206ENST00000487938 BICDL1Q6ZP65 573 aa20.51■□□□□ 0.87
VIM-206ENST00000487938 CATIPQ7Z7H3 387 aa20.51■□□□□ 0.87
VIM-206ENST00000487938 ZNF384Q8TF68 577 aa20.51■□□□□ 0.87
VIM-206ENST00000487938 PHF20Q9BVI0 1012 aa20.51■□□□□ 0.87
VIM-206ENST00000487938 DACH1Q9UI36 760 aa20.51■□□□□ 0.87
VIM-206ENST00000487938 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.51■□□□□ 0.878e-10■□□□□ 9.4
VIM-206ENST00000487938 MYH2Q9UKX2 1941 aa20.51■□□□□ 0.87
VIM-206ENST00000487938 FANCGO15287 622 aa20.5■□□□□ 0.87
VIM-206ENST00000487938 FUT2Q10981 343 aa20.5■□□□□ 0.87
VIM-206ENST00000487938 TBX2Q13207 712 aaPredicted RBP20.5■□□□□ 0.87
VIM-206ENST00000487938 KANK3Q6NY19 840 aa20.5■□□□□ 0.87
VIM-206ENST00000487938 COL1A1P02452 1464 aaPredicted RBP20.5■□□□□ 0.87
VIM-206ENST00000487938 BCL9LQ86UU0 1499 aa20.5■□□□□ 0.87
VIM-206ENST00000487938 PHLPP1O60346 1717 aa20.5■□□□□ 0.87
VIM-206ENST00000487938 TAF1P21675 1872 aa20.5■□□□□ 0.87
VIM-206ENST00000487938 ZNF174Q15697 407 aa20.5■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms