RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, human

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHROOM3-208	ENST00000486758	CASP1	P29466	404 aa		13.98	□□□□□ -0.17
SHROOM3-208	ENST00000486758	ZNF174	Q15697	407 aa		13.98	□□□□□ -0.17
SHROOM3-208	ENST00000486758	CAVIN4	Q5BKX8	364 aa		13.98	□□□□□ -0.17
SHROOM3-208	ENST00000486758	SPATA5	Q8NB90	893 aa		13.98	□□□□□ -0.17
SHROOM3-208	ENST00000486758	ZNF274	Q96GC6	653 aa	Predicted RBP	13.98	□□□□□ -0.17
SHROOM3-208	ENST00000486758	UIMC1	Q96RL1	719 aa		13.98	□□□□□ -0.17
SHROOM3-208	ENST00000486758	TEX13A	Q9BXU3	409 aa	Predicted RBP	13.98	□□□□□ -0.17
SHROOM3-208	ENST00000486758	NRXN3	Q9Y4C0	1643 aa		13.98	□□□□□ -0.17
SHROOM3-208	ENST00000486758		G3V3G9	751 aa		13.98	□□□□□ -0.17
SHROOM3-208	ENST00000486758	ACTN2	P35609	894 aa		13.98	□□□□□ -0.17
SHROOM3-208	ENST00000486758	NR5A1	Q13285	461 aa		13.98	□□□□□ -0.17
SHROOM3-208	ENST00000486758	DCAF8	Q5TAQ9	597 aa		13.98	□□□□□ -0.17
SHROOM3-208	ENST00000486758	CCDC148	Q8NFR7	591 aa		13.98	□□□□□ -0.17
SHROOM3-208	ENST00000486758	SERTAD1	Q9UHV2	236 aa		13.98	□□□□□ -0.17
SHROOM3-208	ENST00000486758	STX8	Q9UNK0	236 aa		13.98	□□□□□ -0.17
SHROOM3-208	ENST00000486758	PHLPP2	Q6ZVD8	1323 aa		13.98	□□□□□ -0.17
SHROOM3-208	ENST00000486758	ERVV-2	B6SEH9	535 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	ERCC3	P19447	782 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	NLRP5	P59047	1200 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	TBC1D10C	Q8IV04	446 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	GOLGA5	Q8TBA6	731 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	ABCB6	Q9NP58	842 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	TSPY2	A6NKD2	308 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	TBC1D8	O95759	1140 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	TXLNA	P40222	546 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	LIG3	P49916	1009 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	FAM98C	Q17RN3	349 aa	Known RBP	13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	IQCA1	Q86XH1	822 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	GBP3	Q9H0R5	595 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	ANKIB1	Q9P2G1	1089 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	PARP3	Q9Y6F1	533 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758		V9GY48	417 aa	Predicted RBP	13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	WDR17	Q8IZU2	1322 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	KIF28P	B7ZC32	967 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	UQCRFS1P1	P0C7P4	283 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	DDB1	Q16531	1140 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	RBM43	Q6ZSC3	357 aa	Known RBP	13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	CYB5R4	Q7L1T6	521 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	BRAP	Q7Z569	592 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	CEP112	Q8N8E3	955 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	ACRBP	Q8NEB7	543 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	TTLL11	Q8NHH1	800 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	SH3TC1	Q8TE82	1336 aa		13.97	□□□□□ -0.17
SHROOM3-208	ENST00000486758	PDE8B	O95263	885 aa		13.96	□□□□□ -0.17
SHROOM3-208	ENST00000486758	YEATS4	O95619	227 aa		13.96	□□□□□ -0.17
SHROOM3-208	ENST00000486758	IFIT1B	Q5T764	474 aa	Known RBP	13.96	□□□□□ -0.17
SHROOM3-208	ENST00000486758	NLRP10	Q86W26	655 aa		13.96	□□□□□ -0.17
SHROOM3-208	ENST00000486758	SLC35F6	Q8N357	371 aa		13.96	□□□□□ -0.17
SHROOM3-208	ENST00000486758	FAM204A	Q9H8W3	233 aa		13.96	□□□□□ -0.17
SHROOM3-208	ENST00000486758	L2HGDH	Q9H9P8	463 aa		13.96	□□□□□ -0.17
SHROOM3-208	ENST00000486758	BCLAF1	Q9NYF8	920 aa	Known RBP eCLIP	13.96	□□□□□ -0.17
SHROOM3-208	ENST00000486758	ZEB2	O60315	1214 aa		13.96	□□□□□ -0.17
SHROOM3-208	ENST00000486758	PDE8A	O60658	829 aa		13.96	□□□□□ -0.17
SHROOM3-208	ENST00000486758	EIF5	P55010	431 aa	Known RBP	13.96	□□□□□ -0.17
SHROOM3-208	ENST00000486758	PUM3	Q15397	648 aa	Known RBP	13.96	□□□□□ -0.17
SHROOM3-208	ENST00000486758	CCDC152	Q4G0S7	254 aa		13.96	□□□□□ -0.17
SHROOM3-208	ENST00000486758	FAM47A	Q5JRC9	791 aa		13.96	□□□□□ -0.17
SHROOM3-208	ENST00000486758	APOA5	Q6Q788	366 aa		13.96	□□□□□ -0.17
SHROOM3-208	ENST00000486758	IFNL3	Q8IZI9	196 aa		13.96	□□□□□ -0.17
SHROOM3-208	ENST00000486758	ENGASE	Q8NFI3	743 aa		13.96	□□□□□ -0.17
SHROOM3-208	ENST00000486758	UPF1	Q92900	1129 aa	Known RBP eCLIP	13.96	□□□□□ -0.17
SHROOM3-208	ENST00000486758	VWA3A	A6NCI4	1184 aa		13.96	□□□□□ -0.18
SHROOM3-208	ENST00000486758	TUBB4A	P04350	444 aa		13.96	□□□□□ -0.18
SHROOM3-208	ENST00000486758	USP5	P45974	858 aa		13.96	□□□□□ -0.18
SHROOM3-208	ENST00000486758	ENOX2	Q16206	610 aa	Known RBP	13.96	□□□□□ -0.18
SHROOM3-208	ENST00000486758	RABL6	Q3YEC7	729 aa	Predicted RBP	13.96	□□□□□ -0.18
SHROOM3-208	ENST00000486758	TEX2	Q8IWB9	1127 aa		13.96	□□□□□ -0.18
SHROOM3-208	ENST00000486758	CTCFL	Q8NI51	663 aa	Predicted RBP	13.96	□□□□□ -0.18
SHROOM3-208	ENST00000486758	MEGF6	O75095	1541 aa		13.96	□□□□□ -0.18
SHROOM3-208	ENST00000486758	XRN1	Q8IZH2	1706 aa	Known RBP	13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	FANCG	O15287	622 aa		13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	ATP2C2	O75185	946 aa		13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	RNF187	Q5TA31	235 aa	Predicted RBP	13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	NCAPH2	Q6IBW4	605 aa		13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	MON2	Q7Z3U7	1717 aa		13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	CATIP	Q7Z7H3	387 aa		13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	VSTM4	Q8IW00	320 aa		13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	RABGGTA	Q92696	567 aa		13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	MKNK2	Q9HBH9	465 aa		13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	ZSWIM5	Q9P217	1185 aa		13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	PCCA	P05165	728 aa	Predicted RBP	13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	CMA1	P23946	247 aa		13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	SF3A3	Q12874	501 aa	Known RBP eCLIP	13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	DZIP1	Q86YF9	867 aa	Known RBP	13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	WASF1	Q92558	559 aa		13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	POLD4	Q9HCU8	107 aa		13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	KDM6A	O15550	1401 aa	Predicted RBP	13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	KIAA0754	O94854	1291 aa		13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	MCM7	P33993	719 aa		13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	ATL3	Q6DD88	541 aa		13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	FOXR1	Q6PIV2	292 aa		13.95	□□□□□ -0.18
SHROOM3-208	ENST00000486758	SPATA31A3	Q5VYP0	1347 aa		13.94	□□□□□ -0.18
SHROOM3-208	ENST00000486758		H3BQF6	201 aa		13.94	□□□□□ -0.18
SHROOM3-208	ENST00000486758	CDC27	P30260	824 aa		13.94	□□□□□ -0.18
SHROOM3-208	ENST00000486758	POSTN	Q15063	836 aa		13.94	□□□□□ -0.18
SHROOM3-208	ENST00000486758	DEFB132	Q7Z7B7	95 aa		13.94	□□□□□ -0.18
SHROOM3-208	ENST00000486758	GSPT2	Q8IYD1	628 aa	Known RBP	13.94	□□□□□ -0.18
SHROOM3-208	ENST00000486758	KRI1	Q8N9T8	703 aa	Known RBP	13.94	□□□□□ -0.18
SHROOM3-208	ENST00000486758	AATF	Q9NY61	560 aa	Known RBP eCLIP	13.94	□□□□□ -0.18

Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms