RNA–Protein interactions for RNA: ENST00000486641.2

CCDC171-208, Transcript of coiled-coil domain containing 171, humanhuman

TSL 1 (best)

Gene CCDC171, Length 2,322 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC171-208ENST00000486641 CAPN7Q9Y6W3 813 aa12.04□□□□□ -0.48
CCDC171-208ENST00000486641 GRIN2DO15399 1336 aa12.04□□□□□ -0.48
CCDC171-208ENST00000486641 RGPD8O14715 1765 aaPredicted RBP12.04□□□□□ -0.48
CCDC171-208ENST00000486641 DIP2AQ14689 1571 aa12.04□□□□□ -0.48
CCDC171-208ENST00000486641 EIF3HO15372 352 aaKnown RBP eCLIP12.04□□□□□ -0.48
CCDC171-208ENST00000486641 KIF1CO43896 1103 aaKnown RBP12.04□□□□□ -0.48
CCDC171-208ENST00000486641 CD44P16070 742 aaKnown RBP12.04□□□□□ -0.48
CCDC171-208ENST00000486641 CDC25AP30304 524 aa12.04□□□□□ -0.48
CCDC171-208ENST00000486641 GNGT1P63211 74 aa12.04□□□□□ -0.48
CCDC171-208ENST00000486641 CCNI2Q6ZMN8 369 aaPredicted RBP12.04□□□□□ -0.48
CCDC171-208ENST00000486641 NCOA7Q8NI08 942 aa12.04□□□□□ -0.48
CCDC171-208ENST00000486641 SETD1BQ9UPS6 1966 aaKnown RBP12.04□□□□□ -0.48
CCDC171-208ENST00000486641 ZMYM6O95789 1325 aa12.04□□□□□ -0.48
CCDC171-208ENST00000486641 SHTN1A0MZ66 631 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 TARSL2A2RTX5 802 aaKnown RBP12.03□□□□□ -0.48
CCDC171-208ENST00000486641 UBE2Q2LH0YL09 131 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 MYO1FO00160 1098 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 TRDNQ13061 729 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 NBPF14Q5TI25 921 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 CYP26C1Q6V0L0 522 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 SPATA20Q8TB22 786 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 METTL22Q9BUU2 404 aaPredicted RBP12.03□□□□□ -0.48
CCDC171-208ENST00000486641 ABHD10Q9NUJ1 306 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 GOLGA6BA6NDN3 693 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 ACTN4O43707 911 aaKnown RBP12.03□□□□□ -0.48
CCDC171-208ENST00000486641 ATP1A1P05023 1023 aaKnown RBP12.03□□□□□ -0.48
CCDC171-208ENST00000486641 FNTAP49354 379 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 TOB1P50616 345 aaPredicted RBP12.03□□□□□ -0.48
CCDC171-208ENST00000486641 RABL6Q3YEC7 729 aaPredicted RBP12.03□□□□□ -0.48
CCDC171-208ENST00000486641 FILIP1LQ4L180 1135 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 CDKAL1Q5VV42 579 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 PLPPR3Q6T4P5 718 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 COPS6Q7L5N1 327 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 UBE3BQ7Z3V4 1068 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 RPAINQ86UA6 219 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 ABTB2Q8N961 1025 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 NKX2-3Q8TAU0 364 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 XAGE3Q8WTP9 111 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 ZNF622Q969S3 477 aaKnown RBP eCLIP12.03□□□□□ -0.48
CCDC171-208ENST00000486641 CAPZA3Q96KX2 299 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 HINFPQ9BQA5 517 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 FBXO2Q9UK22 296 aaPredicted RBP12.03□□□□□ -0.48
CCDC171-208ENST00000486641 DENND2AQ9ULE3 1009 aa12.03□□□□□ -0.48
CCDC171-208ENST00000486641 REXO2Q9Y3B8 237 aaKnown RBP12.03□□□□□ -0.48
CCDC171-208ENST00000486641 IFIT1P09914 478 aaKnown RBP12.02□□□□□ -0.49
CCDC171-208ENST00000486641 METAP2P50579 478 aaKnown RBP eCLIP12.02□□□□□ -0.49
CCDC171-208ENST00000486641 RALYLQ86SE5 291 aaKnown RBP12.02□□□□□ -0.49
CCDC171-208ENST00000486641 FAM212AQ96EL1 285 aa12.02□□□□□ -0.49
CCDC171-208ENST00000486641 CABS1Q96KC9 395 aa12.02□□□□□ -0.49
CCDC171-208ENST00000486641 CTAGE1Q96RT6 745 aa12.02□□□□□ -0.49
CCDC171-208ENST00000486641 CHP1Q99653 195 aa12.02□□□□□ -0.49
CCDC171-208ENST00000486641 SAR1BQ9Y6B6 198 aa12.02□□□□□ -0.49
CCDC171-208ENST00000486641 MARF1Q9Y4F3 1742 aaKnown RBP12.02□□□□□ -0.49
CCDC171-208ENST00000486641 MAP3K15Q6ZN16 1313 aa12.02□□□□□ -0.49
CCDC171-208ENST00000486641 SYNRGQ9UMZ2 1314 aa12.02□□□□□ -0.49
CCDC171-208ENST00000486641 PSMD14O00487 310 aa12.02□□□□□ -0.49
CCDC171-208ENST00000486641 COBLO75128 1261 aa12.02□□□□□ -0.49
CCDC171-208ENST00000486641 PTPREP23469 700 aa12.02□□□□□ -0.49
CCDC171-208ENST00000486641 CCT6AP40227 531 aaKnown RBP12.02□□□□□ -0.49
CCDC171-208ENST00000486641 DDR1Q08345 913 aa12.02□□□□□ -0.49
CCDC171-208ENST00000486641 CUL4BQ13620 913 aa12.02□□□□□ -0.49
CCDC171-208ENST00000486641 CPLX2Q6PUV4 134 aaKnown RBP12.02□□□□□ -0.49
CCDC171-208ENST00000486641 USP49Q70CQ1 688 aa12.02□□□□□ -0.49
CCDC171-208ENST00000486641 XAGE2Q96GT9 111 aa12.02□□□□□ -0.49
CCDC171-208ENST00000486641 SH3GL2Q99962 352 aa12.02□□□□□ -0.49
CCDC171-208ENST00000486641 TFR2Q9UP52 801 aa12.02□□□□□ -0.49
CCDC171-208ENST00000486641 LMO7Q8WWI1 1683 aa12.01□□□□□ -0.49
CCDC171-208ENST00000486641 ADAMTS13Q76LX8 1427 aa12.01□□□□□ -0.49
CCDC171-208ENST00000486641 ITIH6Q6UXX5 1313 aa12.01□□□□□ -0.49
CCDC171-208ENST00000486641 GPTP24298 496 aa12.01□□□□□ -0.49
CCDC171-208ENST00000486641 CASP1P29466 404 aa12.01□□□□□ -0.49
CCDC171-208ENST00000486641 SETQ01105 290 aaPredicted RBP12.01□□□□□ -0.49
CCDC171-208ENST00000486641 TRIM29Q14134 588 aa12.01□□□□□ -0.49
CCDC171-208ENST00000486641 GBP6Q6ZN66 633 aa12.01□□□□□ -0.49
CCDC171-208ENST00000486641 ATG9AQ7Z3C6 839 aa12.01□□□□□ -0.49
CCDC171-208ENST00000486641 NUP88Q99567 741 aaPredicted RBP12.01□□□□□ -0.49
CCDC171-208ENST00000486641 SENP2Q9HC62 589 aa12.01□□□□□ -0.49
CCDC171-208ENST00000486641 A1CFQ9NQ94 594 aaKnown RBP12.01□□□□□ -0.49
CCDC171-208ENST00000486641 EPN1Q9Y6I3 576 aaPredicted RBP12.01□□□□□ -0.49
CCDC171-208ENST00000486641 KDM6AO15550 1401 aaPredicted RBP12.01□□□□□ -0.49
CCDC171-208ENST00000486641 DDX60Q8IY21 1712 aaKnown RBP12.01□□□□□ -0.49
CCDC171-208ENST00000486641 CPDO75976 1380 aa12.01□□□□□ -0.49
CCDC171-208ENST00000486641 WASHC4Q2M389 1173 aa12□□□□□ -0.49
CCDC171-208ENST00000486641 PAPD7Q5XG87 772 aaKnown RBP12□□□□□ -0.49
CCDC171-208ENST00000486641 TICAM2Q86XR7 235 aa12□□□□□ -0.49
CCDC171-208ENST00000486641 SMYD4Q8IYR2 804 aaPredicted RBP12□□□□□ -0.49
CCDC171-208ENST00000486641 LRRC59Q96AG4 307 aaKnown RBP12□□□□□ -0.49
CCDC171-208ENST00000486641 CD248Q9HCU0 757 aa12□□□□□ -0.49
CCDC171-208ENST00000486641 DIP2BQ9P265 1576 aa12□□□□□ -0.49
CCDC171-208ENST00000486641 OVOS2A0A0G2JMS6 1433 aa12□□□□□ -0.49
CCDC171-208ENST00000486641 BTBD18B2RXH4 712 aa12□□□□□ -0.49
CCDC171-208ENST00000486641 ZNF213O14771 459 aa12□□□□□ -0.49
CCDC171-208ENST00000486641 RANBP6O60518 1105 aaKnown RBP12□□□□□ -0.49
CCDC171-208ENST00000486641 CDKL5O76039 1030 aa12□□□□□ -0.49
CCDC171-208ENST00000486641 NDUFA10O95299 355 aa12□□□□□ -0.49
CCDC171-208ENST00000486641 IARSP41252 1262 aaKnown RBP12□□□□□ -0.49
CCDC171-208ENST00000486641 AFMP43652 599 aa12□□□□□ -0.49
CCDC171-208ENST00000486641 NTRK3Q16288 839 aa12□□□□□ -0.49
CCDC171-208ENST00000486641 HSP90AB3PQ58FF7 597 aa12□□□□□ -0.49
CCDC171-208ENST00000486641 C1orf141Q5JVX7 400 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms