RNA–Protein interactions for RNA: ENST00000482056.2

C9orf3-218, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best)

Gene C9orf3, Length 1,951 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-218ENST00000482056 A0A0G2JS52 829 aa17.57■□□□□ 0.4
C9orf3-218ENST00000482056 GOLGA6L9A6NEM1 432 aa17.57■□□□□ 0.4
C9orf3-218ENST00000482056 TRIM75PA6NK02 468 aa17.57■□□□□ 0.4
C9orf3-218ENST00000482056 ARHGAP6O43182 974 aa17.57■□□□□ 0.4
C9orf3-218ENST00000482056 PCP11498 1178 aaKnown RBP17.57■□□□□ 0.4
C9orf3-218ENST00000482056 CATIPQ7Z7H3 387 aa17.57■□□□□ 0.4
C9orf3-218ENST00000482056 PKNOX2Q96KN3 472 aa17.57■□□□□ 0.4
C9orf3-218ENST00000482056 RBM28Q9NW13 759 aaKnown RBP17.57■□□□□ 0.4
C9orf3-218ENST00000482056 ABCF2Q9UG63 623 aa17.57■□□□□ 0.4
C9orf3-218ENST00000482056 PCDHB6Q9Y5E3 794 aa17.57■□□□□ 0.4
C9orf3-218ENST00000482056 CALM1P0DP23 149 aa17.56■□□□□ 0.4
C9orf3-218ENST00000482056 CALM2P0DP24 149 aa17.56■□□□□ 0.4
C9orf3-218ENST00000482056 CALM3P0DP25 149 aa17.56■□□□□ 0.4
C9orf3-218ENST00000482056 ZSCAN20P17040 1043 aaPredicted RBP17.56■□□□□ 0.4
C9orf3-218ENST00000482056 KRT2P35908 639 aa17.56■□□□□ 0.4
C9orf3-218ENST00000482056 SARSP49591 514 aaKnown RBP17.56■□□□□ 0.4
C9orf3-218ENST00000482056 NR5A1Q13285 461 aa17.56■□□□□ 0.4
C9orf3-218ENST00000482056 MORC3Q14149 939 aa17.56■□□□□ 0.4
C9orf3-218ENST00000482056 NUTM2AQ8IVF1 878 aaPredicted RBP17.56■□□□□ 0.4
C9orf3-218ENST00000482056 SRRTQ9BXP5 876 aaKnown RBP17.56■□□□□ 0.4
C9orf3-218ENST00000482056 CABP5Q9NP86 173 aa17.56■□□□□ 0.4
C9orf3-218ENST00000482056 ZNF804BA4D1E1 1349 aa17.56■□□□□ 0.4
C9orf3-218ENST00000482056 FOXN1O15353 648 aa17.55■□□□□ 0.4
C9orf3-218ENST00000482056 PDE4BQ07343 736 aa17.55■□□□□ 0.4
C9orf3-218ENST00000482056 SEC23AQ15436 765 aa17.55■□□□□ 0.4
C9orf3-218ENST00000482056 ELF2Q15723 593 aa17.55■□□□□ 0.4
C9orf3-218ENST00000482056 CAVIN4Q5BKX8 364 aa17.55■□□□□ 0.4
C9orf3-218ENST00000482056 IQCA1Q86XH1 822 aa17.55■□□□□ 0.4
C9orf3-218ENST00000482056 ANKRD18AQ8IVF6 992 aa17.55■□□□□ 0.4
C9orf3-218ENST00000482056 ZSCAN10Q96SZ4 725 aaPredicted RBP17.55■□□□□ 0.4
C9orf3-218ENST00000482056 AATFQ9NY61 560 aaKnown RBP eCLIP17.55■□□□□ 0.4
C9orf3-218ENST00000482056 NFE2L3Q9Y4A8 694 aa17.55■□□□□ 0.4
C9orf3-218ENST00000482056 LOC102724428A0A0B4J2F2 783 aa17.55■□□□□ 0.4
C9orf3-218ENST00000482056 ATP2B1P20020 1258 aa17.55■□□□□ 0.4
C9orf3-218ENST00000482056 BMP6P22004 513 aa17.55■□□□□ 0.4
C9orf3-218ENST00000482056 ERCC5P28715 1186 aaPredicted RBP17.55■□□□□ 0.4
C9orf3-218ENST00000482056 SIK1P57059 783 aa17.55■□□□□ 0.4
C9orf3-218ENST00000482056 UBE4AQ14139 1066 aa17.55■□□□□ 0.4
C9orf3-218ENST00000482056 IFIT1BQ5T764 474 aaKnown RBP17.55■□□□□ 0.4
C9orf3-218ENST00000482056 CMTR1Q8N1G2 835 aaKnown RBP17.55■□□□□ 0.4
C9orf3-218ENST00000482056 BRIP1Q9BX63 1249 aa17.55■□□□□ 0.4
C9orf3-218ENST00000482056 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP17.55■□□□□ 0.4
C9orf3-218ENST00000482056 CICQ96RK0 1608 aaPredicted RBP17.54■□□□□ 0.4
C9orf3-218ENST00000482056 TMEM232C9JQI7 657 aa17.54■□□□□ 0.4
C9orf3-218ENST00000482056 PRPF3O43395 683 aaKnown RBP17.54■□□□□ 0.4
C9orf3-218ENST00000482056 ACTN4O43707 911 aaKnown RBP17.54■□□□□ 0.4
C9orf3-218ENST00000482056 PLCD1P51178 756 aa17.54■□□□□ 0.4
C9orf3-218ENST00000482056 DDB1Q16531 1140 aa17.54■□□□□ 0.4
C9orf3-218ENST00000482056 CCDC93Q567U6 631 aa17.54■□□□□ 0.4
C9orf3-218ENST00000482056 SPECC1LQ69YQ0 1117 aa17.54■□□□□ 0.4
C9orf3-218ENST00000482056 SDR42E1Q8WUS8 393 aa17.54■□□□□ 0.4
C9orf3-218ENST00000482056 CSRNP2Q9H175 543 aa17.54■□□□□ 0.4
C9orf3-218ENST00000482056 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.54■□□□□ 0.4
C9orf3-218ENST00000482056 V9GYY5 206 aaPredicted RBP17.54■□□□□ 0.4
C9orf3-218ENST00000482056 BCL9LQ86UU0 1499 aa17.54■□□□□ 0.4
C9orf3-218ENST00000482056 PRR29P0C7W0 189 aa17.53■□□□□ 0.4
C9orf3-218ENST00000482056 ZNF18P17022 549 aa17.53■□□□□ 0.4
C9orf3-218ENST00000482056 GRIN1Q05586 938 aa17.53■□□□□ 0.4
C9orf3-218ENST00000482056 TBX2Q13207 712 aaPredicted RBP17.53■□□□□ 0.4
C9orf3-218ENST00000482056 KMT5BQ4FZB7 885 aa17.53■□□□□ 0.4
C9orf3-218ENST00000482056 PDILTQ8N807 584 aa17.53■□□□□ 0.4
C9orf3-218ENST00000482056 OXER1Q8TDS5 423 aa17.53■□□□□ 0.4
C9orf3-218ENST00000482056 FERMT2Q96AC1 680 aa17.53■□□□□ 0.4
C9orf3-218ENST00000482056 BAG1Q99933 345 aaPredicted RBP17.53■□□□□ 0.4
C9orf3-218ENST00000482056 DNAI1Q9UI46 699 aa17.53■□□□□ 0.4
C9orf3-218ENST00000482056 THRAP3Q9Y2W1 955 aaKnown RBP17.53■□□□□ 0.4
C9orf3-218ENST00000482056 COL16A1Q07092 1604 aaPredicted RBP17.53■□□□□ 0.4
C9orf3-218ENST00000482056 DUOX1Q9NRD9 1551 aa17.53■□□□□ 0.4
C9orf3-218ENST00000482056 STX10O60499 249 aa17.53■□□□□ 0.4
C9orf3-218ENST00000482056 PHF20Q9BVI0 1012 aa17.53■□□□□ 0.4
C9orf3-218ENST00000482056 BCL11BQ9C0K0 894 aaPredicted RBP17.53■□□□□ 0.4
C9orf3-218ENST00000482056 IQSEC3Q9UPP2 1182 aaPredicted RBP17.53■□□□□ 0.4
C9orf3-218ENST00000482056 COL22A1Q8NFW1 1626 aaPredicted RBP17.53■□□□□ 0.4
C9orf3-218ENST00000482056 DDAH1O94760 285 aa17.52■□□□□ 0.4
C9orf3-218ENST00000482056 ENAHQ8N8S7 591 aaPredicted RBP17.52■□□□□ 0.4
C9orf3-218ENST00000482056 SPATA20Q8TB22 786 aa17.52■□□□□ 0.4
C9orf3-218ENST00000482056 RIOK1Q9BRS2 568 aaKnown RBP17.52■□□□□ 0.4
C9orf3-218ENST00000482056 MYH2Q9UKX2 1941 aa17.52■□□□□ 0.39
C9orf3-218ENST00000482056 GYG1P46976 350 aa17.51■□□□□ 0.39
C9orf3-218ENST00000482056 GABPB1Q06547 395 aaPredicted RBP17.51■□□□□ 0.39
C9orf3-218ENST00000482056 FMR1Q06787 632 aaKnown RBP eCLIP17.51■□□□□ 0.39
C9orf3-218ENST00000482056 FBXO38Q6PIJ6 1188 aa17.51■□□□□ 0.39
C9orf3-218ENST00000482056 CLEC4GQ6UXB4 293 aa17.51■□□□□ 0.39
C9orf3-218ENST00000482056 ADGRA1Q86SQ6 560 aa17.51■□□□□ 0.39
C9orf3-218ENST00000482056 KRT222Q8N1A0 295 aa17.51■□□□□ 0.39
C9orf3-218ENST00000482056 MNS1Q8NEH6 495 aa17.51■□□□□ 0.39
C9orf3-218ENST00000482056 INTS13Q9NVM9 706 aa17.51■□□□□ 0.39
C9orf3-218ENST00000482056 VPS54Q9P1Q0 977 aa17.51■□□□□ 0.39
C9orf3-218ENST00000482056 PRDM4Q9UKN5 801 aa17.51■□□□□ 0.39
C9orf3-218ENST00000482056 PPP2R2CQ9Y2T4 447 aa17.51■□□□□ 0.39
C9orf3-218ENST00000482056 DLEC1Q9Y238 1755 aa17.51■□□□□ 0.39
C9orf3-218ENST00000482056 TPM1P09493 284 aa17.51■□□□□ 0.39
C9orf3-218ENST00000482056 SLFN14P0C7P3 912 aa17.51■□□□□ 0.39
C9orf3-218ENST00000482056 REXO1L1PQ8IX06 675 aa17.51■□□□□ 0.39
C9orf3-218ENST00000482056 SMARCC1Q92922 1105 aaPredicted RBP17.51■□□□□ 0.39
C9orf3-218ENST00000482056 BSDC1Q9NW68 430 aaPredicted RBP17.51■□□□□ 0.39
C9orf3-218ENST00000482056 A0A1B0GUL6 1792 aa17.51■□□□□ 0.39
C9orf3-218ENST00000482056 CACNA1SQ13698 1873 aa17.5■□□□□ 0.39
C9orf3-218ENST00000482056 SEMA3EO15041 775 aa17.5■□□□□ 0.39
C9orf3-218ENST00000482056 PKN1Q16512 942 aa17.5■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms