RNA–Protein interactions for RNA: ENST00000469504.1

COL4A3-204, Transcript of collagen type IV alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL4A3, Length 521 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-204ENST00000469504 TREML2Q5T2D2 321 aa13.35□□□□□ -0.27
COL4A3-204ENST00000469504 AACSQ86V21 672 aa13.35□□□□□ -0.27
COL4A3-204ENST00000469504 ANKRD13CQ8N6S4 541 aa13.35□□□□□ -0.27
COL4A3-204ENST00000469504 RHPN1Q8TCX5 695 aa13.35□□□□□ -0.27
COL4A3-204ENST00000469504 BIN2Q9UBW5 565 aaPredicted RBP13.35□□□□□ -0.27
COL4A3-204ENST00000469504 EXOC6BQ9Y2D4 811 aa13.35□□□□□ -0.27
COL4A3-204ENST00000469504 LOC285556D6RIA3 1793 aa13.35□□□□□ -0.27
COL4A3-204ENST00000469504 USP17L10C9JJH3 530 aa13.34□□□□□ -0.27
COL4A3-204ENST00000469504 RAB11FIP3O75154 756 aa13.34□□□□□ -0.27
COL4A3-204ENST00000469504 CCL5P13501 91 aa13.34□□□□□ -0.27
COL4A3-204ENST00000469504 USP5P45974 858 aa13.34□□□□□ -0.27
COL4A3-204ENST00000469504 MTFR1Q15390 333 aa13.34□□□□□ -0.27
COL4A3-204ENST00000469504 TTC6Q86TZ1 520 aa13.34□□□□□ -0.27
COL4A3-204ENST00000469504 MAGEB6Q8N7X4 407 aa13.34□□□□□ -0.27
COL4A3-204ENST00000469504 PANK1Q8TE04 598 aa13.34□□□□□ -0.27
COL4A3-204ENST00000469504 RNF208Q9H0X6 261 aa13.34□□□□□ -0.27
COL4A3-204ENST00000469504 ASCC2Q9H1I8 757 aaPredicted RBP13.34□□□□□ -0.27
COL4A3-204ENST00000469504 DNAJC18Q9H819 358 aa13.34□□□□□ -0.27
COL4A3-204ENST00000469504 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.34□□□□□ -0.27
COL4A3-204ENST00000469504 MORF4L1Q9UBU8 362 aa13.34□□□□□ -0.27
COL4A3-204ENST00000469504 PALD1Q9ULE6 856 aa13.34□□□□□ -0.27
COL4A3-204ENST00000469504 IRX3P78415 501 aaPredicted RBP13.33□□□□□ -0.28
COL4A3-204ENST00000469504 RRP1BQ14684 758 aaKnown RBP13.33□□□□□ -0.28
COL4A3-204ENST00000469504 TATDN1Q6P1N9 297 aa13.33□□□□□ -0.28
COL4A3-204ENST00000469504 CCDC84Q86UT8 332 aaPredicted RBP13.33□□□□□ -0.28
COL4A3-204ENST00000469504 HTATIP2Q9BUP3 242 aa13.33□□□□□ -0.28
COL4A3-204ENST00000469504 ZBTB40Q9NUA8 1239 aa13.33□□□□□ -0.28
COL4A3-204ENST00000469504 SERPINB13Q9UIV8 391 aa13.33□□□□□ -0.28
COL4A3-204ENST00000469504 ZBTB21Q9ULJ3 1066 aa13.33□□□□□ -0.28
COL4A3-204ENST00000469504 GABRQQ9UN88 632 aa13.33□□□□□ -0.28
COL4A3-204ENST00000469504 ZSWIM8A7E2V4 1837 aa13.33□□□□□ -0.28
COL4A3-204ENST00000469504 FOCADQ5VW36 1801 aa13.32□□□□□ -0.28
COL4A3-204ENST00000469504 MYCP01106 439 aaPredicted RBP13.32□□□□□ -0.28
COL4A3-204ENST00000469504 IFIT2P09913 472 aaKnown RBP13.32□□□□□ -0.28
COL4A3-204ENST00000469504 DYNLL1P63167 89 aaKnown RBP13.32□□□□□ -0.28
COL4A3-204ENST00000469504 MTMR2Q13614 643 aa13.32□□□□□ -0.28
COL4A3-204ENST00000469504 U2AF1L4Q8WU68 220 aaKnown RBP13.32□□□□□ -0.28
COL4A3-204ENST00000469504 SHISA4Q96DD7 197 aa13.32□□□□□ -0.28
COL4A3-204ENST00000469504 ECM2O94769 699 aaPredicted RBP13.31□□□□□ -0.28
COL4A3-204ENST00000469504 SGPL1O95470 568 aa13.31□□□□□ -0.28
COL4A3-204ENST00000469504 USP14P54578 494 aa13.31□□□□□ -0.28
COL4A3-204ENST00000469504 USP17L2Q6R6M4 530 aa13.31□□□□□ -0.28
COL4A3-204ENST00000469504 UBE2Q1Q7Z7E8 422 aa13.31□□□□□ -0.28
COL4A3-204ENST00000469504 MIGA1Q8NAN2 632 aa13.31□□□□□ -0.28
COL4A3-204ENST00000469504 SOCS4Q8WXH5 440 aa13.31□□□□□ -0.28
COL4A3-204ENST00000469504 C12orf42Q96LP6 360 aa13.31□□□□□ -0.28
COL4A3-204ENST00000469504 RIOK1Q9BRS2 568 aaKnown RBP13.31□□□□□ -0.28
COL4A3-204ENST00000469504 MGAMO43451 1857 aa13.31□□□□□ -0.28
COL4A3-204ENST00000469504 SIPA1L1O43166 1804 aa13.3□□□□□ -0.28
COL4A3-204ENST00000469504 ATAD5Q96QE3 1844 aa13.3□□□□□ -0.28
COL4A3-204ENST00000469504 HMGCRP04035 888 aa13.3□□□□□ -0.28
COL4A3-204ENST00000469504 INHAP05111 366 aa13.3□□□□□ -0.28
COL4A3-204ENST00000469504 PDE3AQ14432 1141 aa13.3□□□□□ -0.28
COL4A3-204ENST00000469504 HABP4Q5JVS0 413 aaKnown RBP13.3□□□□□ -0.28
COL4A3-204ENST00000469504 SLC9C2Q5TAH2 1124 aa13.3□□□□□ -0.28
COL4A3-204ENST00000469504 TRMT44Q8IYL2 757 aaKnown RBP13.3□□□□□ -0.28
COL4A3-204ENST00000469504 GPRC5AQ8NFJ5 357 aa13.3□□□□□ -0.28
COL4A3-204ENST00000469504 CRNKL1Q9BZJ0 848 aaKnown RBP13.3□□□□□ -0.28
COL4A3-204ENST00000469504 ANTXR1Q9H6X2 564 aa13.3□□□□□ -0.28
COL4A3-204ENST00000469504 IL1RAPL2Q9NP60 686 aa13.3□□□□□ -0.28
COL4A3-204ENST00000469504 CABP5Q9NP86 173 aa13.3□□□□□ -0.28
COL4A3-204ENST00000469504 PAK6Q9NQU5 681 aaPredicted RBP13.3□□□□□ -0.28
COL4A3-204ENST00000469504 SAP30BPQ9UHR5 308 aaKnown RBP13.3□□□□□ -0.28
COL4A3-204ENST00000469504 RCAN3Q9UKA8 241 aa13.3□□□□□ -0.28
COL4A3-204ENST00000469504 MAGEB6P1A0A0J9YX57 407 aa13.29□□□□□ -0.28
COL4A3-204ENST00000469504 GDF11O95390 407 aa13.29□□□□□ -0.28
COL4A3-204ENST00000469504 GH2P01242 217 aa13.29□□□□□ -0.28
COL4A3-204ENST00000469504 XRCC5P13010 732 aaKnown RBP13.29□□□□□ -0.28
COL4A3-204ENST00000469504 MAPK4P31152 587 aa13.29□□□□□ -0.28
COL4A3-204ENST00000469504 HERVK_113P62684 666 aa13.29□□□□□ -0.28
COL4A3-204ENST00000469504 CERKLQ49MI3 558 aaPredicted RBP13.29□□□□□ -0.28
COL4A3-204ENST00000469504 UNC93B1Q9H1C4 597 aa13.29□□□□□ -0.28
COL4A3-204ENST00000469504 GJD2Q9UKL4 321 aa13.29□□□□□ -0.28
COL4A3-204ENST00000469504 COG6Q9Y2V7 657 aa13.29□□□□□ -0.28
COL4A3-204ENST00000469504 FARP2O94887 1054 aaPredicted RBP13.28□□□□□ -0.28
COL4A3-204ENST00000469504 POLR3DP05423 398 aaPredicted RBP13.28□□□□□ -0.28
COL4A3-204ENST00000469504 ELNP15502 786 aa13.28□□□□□ -0.28
COL4A3-204ENST00000469504 PDE6AP16499 860 aa13.28□□□□□ -0.28
COL4A3-204ENST00000469504 ABCB5Q2M3G0 1257 aa13.28□□□□□ -0.28
COL4A3-204ENST00000469504 ANKLE1Q8NAG6 615 aa13.28□□□□□ -0.28
COL4A3-204ENST00000469504 P2RX7Q99572 595 aaKnown RBP13.28□□□□□ -0.28
COL4A3-204ENST00000469504 FEZ1Q99689 392 aa13.28□□□□□ -0.28
COL4A3-204ENST00000469504 NUDT12Q9BQG2 462 aa13.28□□□□□ -0.28
COL4A3-204ENST00000469504 DDX24Q9GZR7 859 aaKnown RBP eCLIP13.28□□□□□ -0.28
COL4A3-204ENST00000469504 KIAA1683Q9H0B3 1180 aa13.28□□□□□ -0.28
COL4A3-204ENST00000469504 NR2E3Q9Y5X4 410 aa13.28□□□□□ -0.28
COL4A3-204ENST00000469504 CDK5RAP2Q96SN8 1893 aa13.27□□□□□ -0.28
COL4A3-204ENST00000469504 USP17L15C9J2P7 530 aa13.27□□□□□ -0.29
COL4A3-204ENST00000469504 USP17L13C9JLJ4 530 aa13.27□□□□□ -0.29
COL4A3-204ENST00000469504 USP17L11C9JVI0 530 aa13.27□□□□□ -0.29
COL4A3-204ENST00000469504 USP17L18D6R9N7 530 aa13.27□□□□□ -0.29
COL4A3-204ENST00000469504 USP17L22D6RA61 530 aa13.27□□□□□ -0.29
COL4A3-204ENST00000469504 USP17L17D6RBQ6 530 aa13.27□□□□□ -0.29
COL4A3-204ENST00000469504 USP17L19D6RCP7 530 aa13.27□□□□□ -0.29
COL4A3-204ENST00000469504 USP17L20D6RJB6 530 aa13.27□□□□□ -0.29
COL4A3-204ENST00000469504 ATP5JP18859 108 aa13.27□□□□□ -0.29
COL4A3-204ENST00000469504 ERVK-9P63128 1117 aa13.27□□□□□ -0.29
COL4A3-204ENST00000469504 ERVK-24P63145 666 aa13.27□□□□□ -0.29
COL4A3-204ENST00000469504 CCNA1P78396 465 aa13.27□□□□□ -0.29
COL4A3-204ENST00000469504 JAG1P78504 1218 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms