RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 RRP12Q5JTH9 1297 aaKnown RBP8.82□□□□□ -1
COL6A3-208ENST00000468792 IFIT1BQ5T764 474 aaKnown RBP8.82□□□□□ -1
COL6A3-208ENST00000468792 CCDC73Q6ZRK6 1079 aa8.82□□□□□ -1
COL6A3-208ENST00000468792 COL23A1Q86Y22 540 aaPredicted RBP8.82□□□□□ -1
COL6A3-208ENST00000468792 FAM200AQ8TCP9 573 aa8.82□□□□□ -1
COL6A3-208ENST00000468792 BICD2Q8TD16 824 aa8.82□□□□□ -1
COL6A3-208ENST00000468792 MRPS27Q92552 414 aaKnown RBP8.82□□□□□ -1
COL6A3-208ENST00000468792 MASTLQ96GX5 879 aa8.82□□□□□ -1
COL6A3-208ENST00000468792 TIGD1Q96MW7 591 aa8.82□□□□□ -1
COL6A3-208ENST00000468792 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.82□□□□□ -1
COL6A3-208ENST00000468792 RTFDC1Q9BY42 306 aaPredicted RBP8.82□□□□□ -1
COL6A3-208ENST00000468792 POLLQ9UGP5 575 aa8.82□□□□□ -1
COL6A3-208ENST00000468792 PCDHA7Q9UN72 937 aa8.82□□□□□ -1
COL6A3-208ENST00000468792 ANKRD31Q8N7Z5 1873 aa8.81□□□□□ -1
COL6A3-208ENST00000468792 APBA3O96018 575 aa8.81□□□□□ -1
COL6A3-208ENST00000468792 ME1P48163 572 aa8.81□□□□□ -1
COL6A3-208ENST00000468792 NOVP48745 357 aa8.81□□□□□ -1
COL6A3-208ENST00000468792 GNAQP50148 359 aa8.81□□□□□ -1
COL6A3-208ENST00000468792 TYRO3Q06418 890 aa8.81□□□□□ -1
COL6A3-208ENST00000468792 STK38Q15208 465 aa8.81□□□□□ -1
COL6A3-208ENST00000468792 RILPL1Q5EBL4 403 aa8.81□□□□□ -1
COL6A3-208ENST00000468792 AXDND1Q5T1B0 1012 aaPredicted RBP8.81□□□□□ -1
COL6A3-208ENST00000468792 NOSTRINQ8IVI9 506 aa8.81□□□□□ -1
COL6A3-208ENST00000468792 CCAR1Q8IX12 1150 aaKnown RBP8.81□□□□□ -1
COL6A3-208ENST00000468792 FMR1NBQ8N0W7 255 aaPredicted RBP8.81□□□□□ -1
COL6A3-208ENST00000468792 PHKBQ93100 1093 aa8.81□□□□□ -1
COL6A3-208ENST00000468792 SLC26A6Q9BXS9 759 aa8.81□□□□□ -1
COL6A3-208ENST00000468792 TOMM22Q9NS69 142 aa8.81□□□□□ -1
COL6A3-208ENST00000468792 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.81□□□□□ -1
COL6A3-208ENST00000468792 BAZ2AQ9UIF9 1905 aaKnown RBP8.81□□□□□ -1
COL6A3-208ENST00000468792 QSER1Q2KHR3 1735 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 MYH2Q9UKX2 1941 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 ESPNB1AK53 854 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 KIF28PB7ZC32 967 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 KINO60870 393 aaKnown RBP8.8□□□□□ -1
COL6A3-208ENST00000468792 BMP15O95972 392 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 SMARCA1P28370 1054 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 KIF5BP33176 963 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 CLCN1P35523 988 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 USP5P45974 858 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 AKAP17AQ02040 695 aaKnown RBP8.8□□□□□ -1
COL6A3-208ENST00000468792 GUCY1B3Q02153 619 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 PTPAQ15257 358 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 SF3A1Q15459 793 aaKnown RBP8.8□□□□□ -1
COL6A3-208ENST00000468792 GRIPAP1Q4V328 841 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 CC2D2BQ6DHV5 1058 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 STYK1Q6J9G0 422 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 TMTC3Q6ZXV5 915 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 ZNF579Q8NAF0 562 aaKnown RBP8.8□□□□□ -1
COL6A3-208ENST00000468792 EYA3Q99504 573 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 LZTS2Q9BRK4 669 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 TMX4Q9H1E5 349 aaPredicted RBP8.8□□□□□ -1
COL6A3-208ENST00000468792 MCM9Q9NXL9 1143 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 USP25Q9UHP3 1055 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 CLIC4Q9Y696 253 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 PARP3Q9Y6F1 533 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 TNS1Q9HBL0 1735 aaKnown RBP8.8□□□□□ -1
COL6A3-208ENST00000468792 C10orf71Q711Q0 1435 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 MYO3BQ8WXR4 1341 aa8.8□□□□□ -1
COL6A3-208ENST00000468792 CYP2D7A0A087X1C5 515 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 CUTAO60888 179 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 POLR3DP05423 398 aaPredicted RBP8.79□□□□□ -1
COL6A3-208ENST00000468792 RXRAP19793 462 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 RHBDL3P58872 404 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 HDLBPQ00341 1268 aaKnown RBP8.79□□□□□ -1
COL6A3-208ENST00000468792 PKN1Q16512 942 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 MFSD14BQ5SR56 506 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 OTUD7BQ6GQQ9 843 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 RCSD1Q6JBY9 416 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 SASS6Q6UVJ0 657 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 HHIPL2Q6UWX4 724 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 C16orf86Q6ZW13 317 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 PODNQ7Z5L7 613 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 ZSCAN30Q86W11 494 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 MPNDQ8N594 471 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 FSIP1Q8NA03 581 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 CTCFLQ8NI51 663 aaPredicted RBP8.79□□□□□ -1
COL6A3-208ENST00000468792 SH3RF3Q8TEJ3 882 aaPredicted RBP8.79□□□□□ -1
COL6A3-208ENST00000468792 ZKSCAN3Q9BRR0 538 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 MYL10Q9BUA6 226 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 PHF20Q9BVI0 1012 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 ZC3H12CQ9C0D7 883 aaKnown RBP8.79□□□□□ -1
COL6A3-208ENST00000468792 SH3GLB2Q9NR46 395 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 CCDC39Q9UFE4 941 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 NOL7Q9UMY1 257 aaKnown RBP8.79□□□□□ -1
COL6A3-208ENST00000468792 CEP131Q9UPN4 1083 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 HPSEQ9Y251 543 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 MRVI1Q9Y6F6 885 aa8.79□□□□□ -1
COL6A3-208ENST00000468792 DDX60LQ5H9U9 1706 aaKnown RBP8.79□□□□□ -1
COL6A3-208ENST00000468792 ECM29Q5VYK3 1845 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 PLIN4Q96Q06 1357 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 TSPY2A6NKD2 308 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 C6orf229H3BNL8 230 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 TPM3P06753 285 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 MMP10P09238 476 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 USP17L8P0C7I0 530 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 BTDP43251 543 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 TRAPPC10P48553 1259 aa8.78□□□□□ -1
COL6A3-208ENST00000468792 GNL2Q13823 731 aaKnown RBP8.78□□□□□ -1
COL6A3-208ENST00000468792 GRIK5Q16478 980 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms