RNA–Protein interactions for RNA: ENST00000459775.5

USP39-210, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2

Gene USP39, Length 2,148 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-210ENST00000459775 FOXD4L1Q9NU39 408 aa12.18□□□□□ -0.46
USP39-210ENST00000459775 GPRC5DQ9NZD1 345 aa12.18□□□□□ -0.46
USP39-210ENST00000459775 HACL1Q9UJ83 578 aa12.18□□□□□ -0.46
USP39-210ENST00000459775 RPS6KB1P23443 525 aa12.17□□□□□ -0.46
USP39-210ENST00000459775 RPS12P25398 132 aaKnown RBP12.17□□□□□ -0.46
USP39-210ENST00000459775 RGS19P49795 217 aa12.17□□□□□ -0.46
USP39-210ENST00000459775 AK2P54819 239 aa12.17□□□□□ -0.46
USP39-210ENST00000459775 MLLT1Q03111 559 aaPredicted RBP12.17□□□□□ -0.46
USP39-210ENST00000459775 FAM47AQ5JRC9 791 aa12.17□□□□□ -0.46
USP39-210ENST00000459775 AKNAD1Q5T1N1 836 aa12.17□□□□□ -0.46
USP39-210ENST00000459775 PRAMEF18Q5VWM3 479 aa12.17□□□□□ -0.46
USP39-210ENST00000459775 ZSCAN29Q8IWY8 852 aaPredicted RBP12.17□□□□□ -0.46
USP39-210ENST00000459775 DPF2Q92785 391 aa12.17□□□□□ -0.46
USP39-210ENST00000459775 TTC14Q96N46 770 aa12.17□□□□□ -0.46
USP39-210ENST00000459775 OSBPL5Q9H0X9 879 aaPredicted RBP12.17□□□□□ -0.46
USP39-210ENST00000459775 PDRG1Q9NUG6 133 aa12.17□□□□□ -0.46
USP39-210ENST00000459775 CYP46A1Q9Y6A2 500 aa12.17□□□□□ -0.46
USP39-210ENST00000459775 NMT2O60551 498 aa12.17□□□□□ -0.46
USP39-210ENST00000459775 SHROOM1Q2M3G4 852 aaPredicted RBP12.17□□□□□ -0.46
USP39-210ENST00000459775 DEFB115Q30KQ5 88 aa12.17□□□□□ -0.46
USP39-210ENST00000459775 GIMAP6Q6P9H5 292 aa12.17□□□□□ -0.46
USP39-210ENST00000459775 MFSD6Q6ZSS7 791 aa12.17□□□□□ -0.46
USP39-210ENST00000459775 MB21D2Q8IYB1 491 aaPredicted RBP12.17□□□□□ -0.46
USP39-210ENST00000459775 DDRGK1Q96HY6 314 aa12.17□□□□□ -0.46
USP39-210ENST00000459775 TMEM39BQ9GZU3 492 aa12.17□□□□□ -0.46
USP39-210ENST00000459775 ZSWIM5Q9P217 1185 aa12.17□□□□□ -0.46
USP39-210ENST00000459775 ZMYM6O95789 1325 aa12.16□□□□□ -0.46
USP39-210ENST00000459775 LARGE1O95461 756 aa12.16□□□□□ -0.46
USP39-210ENST00000459775 ITGBL1O95965 494 aaPredicted RBP12.16□□□□□ -0.46
USP39-210ENST00000459775 ECE1P42892 770 aa12.16□□□□□ -0.46
USP39-210ENST00000459775 KIF4BQ2VIQ3 1234 aa12.16□□□□□ -0.46
USP39-210ENST00000459775 SPDYE2Q495Y8 402 aa12.16□□□□□ -0.46
USP39-210ENST00000459775 SBK1Q52WX2 424 aa12.16□□□□□ -0.46
USP39-210ENST00000459775 RAB11FIP4Q86YS3 637 aa12.16□□□□□ -0.46
USP39-210ENST00000459775 ANAPC4Q9UJX5 808 aa12.16□□□□□ -0.46
USP39-210ENST00000459775 H7C1D1 291 aa12.16□□□□□ -0.46
USP39-210ENST00000459775 RANBP6O60518 1105 aaKnown RBP12.16□□□□□ -0.46
USP39-210ENST00000459775 EXOSC10Q01780 885 aaKnown RBP12.16□□□□□ -0.46
USP39-210ENST00000459775 TOB2Q14106 344 aaPredicted RBP12.16□□□□□ -0.46
USP39-210ENST00000459775 Q6ZUG5 572 aa12.16□□□□□ -0.46
USP39-210ENST00000459775 CHMP4CQ96CF2 233 aa12.16□□□□□ -0.46
USP39-210ENST00000459775 SGSM3Q96HU1 749 aa12.16□□□□□ -0.46
USP39-210ENST00000459775 BEGAINQ9BUH8 593 aa12.16□□□□□ -0.46
USP39-210ENST00000459775 TM6SF1Q9BZW5 370 aa12.16□□□□□ -0.46
USP39-210ENST00000459775 ARPP21Q9UBL0 812 aaPredicted RBP12.16□□□□□ -0.46
USP39-210ENST00000459775 WDR33Q9C0J8 1336 aaKnown RBP12.15□□□□□ -0.46
USP39-210ENST00000459775 PRC1O43663 620 aa12.15□□□□□ -0.46
USP39-210ENST00000459775 POTEIP0CG38 1075 aa12.15□□□□□ -0.46
USP39-210ENST00000459775 POTEJP0CG39 1038 aa12.15□□□□□ -0.46
USP39-210ENST00000459775 PSMA5P28066 241 aa12.15□□□□□ -0.46
USP39-210ENST00000459775 KRT32Q14532 448 aa12.15□□□□□ -0.46
USP39-210ENST00000459775 DHX32Q7L7V1 743 aaKnown RBP12.15□□□□□ -0.46
USP39-210ENST00000459775 RALYLQ86SE5 291 aaKnown RBP12.15□□□□□ -0.46
USP39-210ENST00000459775 MTMR14Q8NCE2 650 aa12.15□□□□□ -0.46
USP39-210ENST00000459775 NCOA7Q8NI08 942 aa12.15□□□□□ -0.46
USP39-210ENST00000459775 STAG1Q8WVM7 1258 aa12.15□□□□□ -0.46
USP39-210ENST00000459775 IPO9Q96P70 1041 aaKnown RBP12.15□□□□□ -0.46
USP39-210ENST00000459775 IDI2Q9BXS1 227 aa12.15□□□□□ -0.46
USP39-210ENST00000459775 CDK5RAP2Q96SN8 1893 aa12.15□□□□□ -0.47
USP39-210ENST00000459775 EPHX2P34913 555 aa12.14□□□□□ -0.47
USP39-210ENST00000459775 ANGEL2Q5VTE6 544 aaKnown RBP12.14□□□□□ -0.47
USP39-210ENST00000459775 IL27Q8NEV9 243 aa12.14□□□□□ -0.47
USP39-210ENST00000459775 BRF1Q92994 677 aa12.14□□□□□ -0.47
USP39-210ENST00000459775 DNAJC18Q9H819 358 aa12.14□□□□□ -0.47
USP39-210ENST00000459775 TPCN1Q9ULQ1 816 aa12.14□□□□□ -0.47
USP39-210ENST00000459775 FZD1Q9UP38 647 aa12.14□□□□□ -0.47
USP39-210ENST00000459775 CA12O43570 354 aa12.14□□□□□ -0.47
USP39-210ENST00000459775 PPFIA3O75145 1194 aa12.14□□□□□ -0.47
USP39-210ENST00000459775 CDK8P49336 464 aa12.14□□□□□ -0.47
USP39-210ENST00000459775 APOBRQ0VD83 1088 aa12.14□□□□□ -0.47
USP39-210ENST00000459775 TRDNQ13061 729 aa12.14□□□□□ -0.47
USP39-210ENST00000459775 MIGA2Q7L4E1 593 aa12.14□□□□□ -0.47
USP39-210ENST00000459775 NECAB1Q8N987 351 aa12.14□□□□□ -0.47
USP39-210ENST00000459775 TRAIPQ9BWF2 469 aa12.14□□□□□ -0.47
USP39-210ENST00000459775 CLEC11AQ9Y240 323 aa12.14□□□□□ -0.47
USP39-210ENST00000459775 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.14□□□□□ -0.47
USP39-210ENST00000459775 ST18O60284 1047 aa12.13□□□□□ -0.47
USP39-210ENST00000459775 STK3Q13188 491 aa12.13□□□□□ -0.47
USP39-210ENST00000459775 RASA3Q14644 834 aa12.13□□□□□ -0.47
USP39-210ENST00000459775 EAPPQ56P03 285 aaPredicted RBP12.13□□□□□ -0.47
USP39-210ENST00000459775 CLEC10AQ8IUN9 316 aa12.13□□□□□ -0.47
USP39-210ENST00000459775 TMOD2Q9NZR1 351 aa12.13□□□□□ -0.47
USP39-210ENST00000459775 MYO1BO43795 1136 aa12.13□□□□□ -0.47
USP39-210ENST00000459775 MCM5P33992 734 aa12.13□□□□□ -0.47
USP39-210ENST00000459775 RRP1BQ14684 758 aaKnown RBP12.13□□□□□ -0.47
USP39-210ENST00000459775 HSCBQ8IWL3 235 aa12.13□□□□□ -0.47
USP39-210ENST00000459775 ANP32BQ92688 251 aaKnown RBP12.13□□□□□ -0.47
USP39-210ENST00000459775 SNX21Q969T3 373 aa12.13□□□□□ -0.47
USP39-210ENST00000459775 TMX3Q96JJ7 454 aa12.13□□□□□ -0.47
USP39-210ENST00000459775 CSRNP1Q96S65 589 aa12.13□□□□□ -0.47
USP39-210ENST00000459775 MKNK2Q9HBH9 465 aa12.13□□□□□ -0.47
USP39-210ENST00000459775 GGA3Q9NZ52 723 aa12.13□□□□□ -0.47
USP39-210ENST00000459775 FGRP09769 529 aa12.12□□□□□ -0.47
USP39-210ENST00000459775 RXRAP19793 462 aa12.12□□□□□ -0.47
USP39-210ENST00000459775 RASA1P20936 1047 aa12.12□□□□□ -0.47
USP39-210ENST00000459775 SHMT1P34896 483 aa12.12□□□□□ -0.47
USP39-210ENST00000459775 JAG1P78504 1218 aa12.12□□□□□ -0.47
USP39-210ENST00000459775 TFAP4Q01664 338 aa12.12□□□□□ -0.47
USP39-210ENST00000459775 GABPAQ06546 454 aa12.12□□□□□ -0.47
USP39-210ENST00000459775 ME3Q16798 604 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms