RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 TMEM87BQ96K49 555 aa9.72□□□□□ -0.85
VPS50-208ENST00000458707 CLIC6Q96NY7 704 aa9.72□□□□□ -0.85
VPS50-208ENST00000458707 HOOK1Q9UJC3 728 aaKnown RBP9.72□□□□□ -0.85
VPS50-208ENST00000458707 BOLA1Q9Y3E2 137 aa9.72□□□□□ -0.85
VPS50-208ENST00000458707 RIC1Q4ADV7 1423 aa9.72□□□□□ -0.85
VPS50-208ENST00000458707 DLEC1Q9Y238 1755 aa9.72□□□□□ -0.85
VPS50-208ENST00000458707 NUP98P52948 1817 aa9.72□□□□□ -0.85
VPS50-208ENST00000458707 FAM205CA6NFA0 338 aa9.71□□□□□ -0.85
VPS50-208ENST00000458707 OAS2P29728 719 aaKnown RBP9.71□□□□□ -0.85
VPS50-208ENST00000458707 ZAP70P43403 619 aa9.71□□□□□ -0.85
VPS50-208ENST00000458707 ZC3H6P61129 1189 aaKnown RBP9.71□□□□□ -0.85
VPS50-208ENST00000458707 GNG11P61952 73 aa9.71□□□□□ -0.85
VPS50-208ENST00000458707 TRDNQ13061 729 aa9.71□□□□□ -0.85
VPS50-208ENST00000458707 MORC3Q14149 939 aa9.71□□□□□ -0.85
VPS50-208ENST00000458707 CYB5R4Q7L1T6 521 aa9.71□□□□□ -0.85
VPS50-208ENST00000458707 MSL3Q8N5Y2 521 aaKnown RBP9.71□□□□□ -0.85
VPS50-208ENST00000458707 KRI1Q8N9T8 703 aaKnown RBP9.71□□□□□ -0.85
VPS50-208ENST00000458707 SPOCK2Q92563 424 aa9.71□□□□□ -0.85
VPS50-208ENST00000458707 ZNF512BQ96KM6 892 aaPredicted RBP9.71□□□□□ -0.85
VPS50-208ENST00000458707 PLA2G12BQ9BX93 195 aa9.71□□□□□ -0.85
VPS50-208ENST00000458707 FUT8Q9BYC5 575 aa9.71□□□□□ -0.85
VPS50-208ENST00000458707 TNKS1BP1Q9C0C2 1729 aaKnown RBP9.71□□□□□ -0.85
VPS50-208ENST00000458707 ARFGAP3Q9NP61 516 aa9.71□□□□□ -0.85
VPS50-208ENST00000458707 PSD3Q9NYI0 1048 aa9.71□□□□□ -0.85
VPS50-208ENST00000458707 DACH1Q9UI36 760 aa9.71□□□□□ -0.85
VPS50-208ENST00000458707 MAN1B1Q9UKM7 699 aa9.71□□□□□ -0.85
VPS50-208ENST00000458707 UBN2Q6ZU65 1347 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 CCDC151A5D8V7 595 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 ADD2P35612 726 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 TXLNAP40222 546 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 SMC1AQ14683 1233 aaKnown RBP9.7□□□□□ -0.86
VPS50-208ENST00000458707 NR1I3Q14994 352 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 POSTNQ15063 836 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 TMEM132AQ24JP5 1023 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 HSP90AB3PQ58FF7 597 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 CT47A1Q5JQC4 288 aaPredicted RBP9.7□□□□□ -0.86
VPS50-208ENST00000458707 TOGARAM2Q6ZUX3 1019 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 TBC1D10CQ8IV04 446 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 IGDCC4Q8TDY8 1250 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 HNRNPLLQ8WVV9 542 aaKnown RBP9.7□□□□□ -0.86
VPS50-208ENST00000458707 GOLGA1Q92805 767 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 PANX2Q96RD6 677 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 ISCA1Q9BUE6 129 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 PARD6BQ9BYG5 372 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 DDX24Q9GZR7 859 aaKnown RBP eCLIP9.7□□□□□ -0.86
VPS50-208ENST00000458707 FAM217BQ9NTX9 383 aaPredicted RBP9.7□□□□□ -0.86
VPS50-208ENST00000458707 TOGARAM1Q9Y4F4 1720 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 A0A1B0GTH6 734 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 G3V3G9 751 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 MAP2K7O14733 419 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 RANBP6O60518 1105 aaKnown RBP9.7□□□□□ -0.86
VPS50-208ENST00000458707 CAPN2P17655 700 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 PTPREP23469 700 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 IARSP41252 1262 aaKnown RBP9.7□□□□□ -0.86
VPS50-208ENST00000458707 LIFRP42702 1097 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 FMR1Q06787 632 aaKnown RBP eCLIP9.7□□□□□ -0.86
VPS50-208ENST00000458707 GPS2Q13227 327 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 GNL2Q13823 731 aaKnown RBP9.7□□□□□ -0.86
VPS50-208ENST00000458707 BRD3Q15059 726 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 CCDC57Q2TAC2 916 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 DPY19L2Q6NUT2 758 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 NUTM2AQ8IVF1 878 aaPredicted RBP9.7□□□□□ -0.86
VPS50-208ENST00000458707 STK11IPQ8N1F8 1099 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 NKX2-3Q8TAU0 364 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 SPATA20Q8TB22 786 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 SMARCE1Q969G3 411 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 LY9Q9HBG7 655 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 RAI14Q9P0K7 980 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 DENND2AQ9ULE3 1009 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 NFE2L3Q9Y4A8 694 aa9.7□□□□□ -0.86
VPS50-208ENST00000458707 PLCH1Q4KWH8 1693 aa9.69□□□□□ -0.86
VPS50-208ENST00000458707 TNS2Q63HR2 1409 aa9.69□□□□□ -0.86
VPS50-208ENST00000458707 WDR17Q8IZU2 1322 aa9.69□□□□□ -0.86
VPS50-208ENST00000458707 POLR3GO15318 223 aaPredicted RBP9.69□□□□□ -0.86
VPS50-208ENST00000458707 FOXN1O15353 648 aa9.69□□□□□ -0.86
VPS50-208ENST00000458707 ZBTB43O43298 467 aa9.69□□□□□ -0.86
VPS50-208ENST00000458707 FMNL1O95466 1100 aaPredicted RBP9.69□□□□□ -0.86
VPS50-208ENST00000458707 CSF1RP07333 972 aa9.69□□□□□ -0.86
VPS50-208ENST00000458707 HOXB3P14651 431 aaPredicted RBP9.69□□□□□ -0.86
VPS50-208ENST00000458707 ERCC5P28715 1186 aaPredicted RBP9.69□□□□□ -0.86
VPS50-208ENST00000458707 TOB1P50616 345 aaPredicted RBP9.69□□□□□ -0.86
VPS50-208ENST00000458707 ADKP55263 362 aaKnown RBP9.69□□□□□ -0.86
VPS50-208ENST00000458707 TUBB4BP68371 445 aa9.69□□□□□ -0.86
VPS50-208ENST00000458707 ST5P78524 1137 aa9.69□□□□□ -0.86
VPS50-208ENST00000458707 TRIM28Q13263 835 aaKnown RBP9.69□□□□□ -0.86
VPS50-208ENST00000458707 TRIM29Q14134 588 aa9.69□□□□□ -0.86
VPS50-208ENST00000458707 UBE3CQ15386 1083 aa9.69□□□□□ -0.86
VPS50-208ENST00000458707 ALX1Q15699 326 aa9.69□□□□□ -0.86
VPS50-208ENST00000458707 NOSTRINQ8IVI9 506 aa9.69□□□□□ -0.86
VPS50-208ENST00000458707 PHKBQ93100 1093 aa9.69□□□□□ -0.86
VPS50-208ENST00000458707 EXOC4Q96A65 974 aa9.69□□□□□ -0.86
VPS50-208ENST00000458707 DHX58Q96C10 678 aa9.69□□□□□ -0.86
VPS50-208ENST00000458707 MED15Q96RN5 788 aa9.69□□□□□ -0.86
VPS50-208ENST00000458707 NAA15Q9BXJ9 866 aaKnown RBP9.69□□□□□ -0.86
VPS50-208ENST00000458707 EPC1Q9H2F5 836 aa9.69□□□□□ -0.86
VPS50-208ENST00000458707 FBXO2Q9UK22 296 aaPredicted RBP9.69□□□□□ -0.86
VPS50-208ENST00000458707 LRP5O75197 1615 aa9.68□□□□□ -0.86
VPS50-208ENST00000458707 CCDC175P0C221 793 aa9.68□□□□□ -0.86
VPS50-208ENST00000458707 MCAMP43121 646 aa9.68□□□□□ -0.86
VPS50-208ENST00000458707 USP5P45974 858 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms