RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 IFNL1Q8IU54 200 aa13□□□□□ -0.33
SCN9A-205ENST00000454569 NCOA7Q8NI08 942 aa13□□□□□ -0.33
SCN9A-205ENST00000454569 DDRGK1Q96HY6 314 aa13□□□□□ -0.33
SCN9A-205ENST00000454569 TEPSINQ96N21 525 aa13□□□□□ -0.33
SCN9A-205ENST00000454569 ZKSCAN3Q9BRR0 538 aa13□□□□□ -0.33
SCN9A-205ENST00000454569 TBC1D2Q9BYX2 928 aa13□□□□□ -0.33
SCN9A-205ENST00000454569 ADARB2Q9NS39 739 aaKnown RBP13□□□□□ -0.33
SCN9A-205ENST00000454569 TOMM22Q9NS69 142 aa13□□□□□ -0.33
SCN9A-205ENST00000454569 ATAD5Q96QE3 1844 aa13□□□□□ -0.33
SCN9A-205ENST00000454569 ATRNL1Q5VV63 1379 aa12.99□□□□□ -0.33
SCN9A-205ENST00000454569 NMT2O60551 498 aa12.99□□□□□ -0.33
SCN9A-205ENST00000454569 DTNBO60941 627 aa12.99□□□□□ -0.33
SCN9A-205ENST00000454569 RASA1P20936 1047 aa12.99□□□□□ -0.33
SCN9A-205ENST00000454569 LMOD1P29536 600 aaPredicted RBP12.99□□□□□ -0.33
SCN9A-205ENST00000454569 MMP14P50281 582 aa12.99□□□□□ -0.33
SCN9A-205ENST00000454569 JAG1P78504 1218 aa12.99□□□□□ -0.33
SCN9A-205ENST00000454569 KRT32Q14532 448 aa12.99□□□□□ -0.33
SCN9A-205ENST00000454569 Q6ZUG5 572 aa12.99□□□□□ -0.33
SCN9A-205ENST00000454569 C16orf86Q6ZW13 317 aa12.99□□□□□ -0.33
SCN9A-205ENST00000454569 DHX32Q7L7V1 743 aaKnown RBP12.99□□□□□ -0.33
SCN9A-205ENST00000454569 ZSCAN29Q8IWY8 852 aaPredicted RBP12.99□□□□□ -0.33
SCN9A-205ENST00000454569 PDRG1Q9NUG6 133 aa12.99□□□□□ -0.33
SCN9A-205ENST00000454569 GGA3Q9NZ52 723 aa12.99□□□□□ -0.33
SCN9A-205ENST00000454569 CYP46A1Q9Y6A2 500 aa12.99□□□□□ -0.33
SCN9A-205ENST00000454569 MYH4Q9Y623 1939 aa12.99□□□□□ -0.33
SCN9A-205ENST00000454569 PRC1O43663 620 aa12.98□□□□□ -0.33
SCN9A-205ENST00000454569 MYO1BO43795 1136 aa12.98□□□□□ -0.33
SCN9A-205ENST00000454569 ORC4O43929 436 aa12.98□□□□□ -0.33
SCN9A-205ENST00000454569 LARGE1O95461 756 aa12.98□□□□□ -0.33
SCN9A-205ENST00000454569 PSMA5P28066 241 aa12.98□□□□□ -0.33
SCN9A-205ENST00000454569 SHMT1P34896 483 aa12.98□□□□□ -0.33
SCN9A-205ENST00000454569 EPHX2P34913 555 aa12.98□□□□□ -0.33
SCN9A-205ENST00000454569 FKBP1CQ5VVH2 108 aa12.98□□□□□ -0.33
SCN9A-205ENST00000454569 KIF12Q96FN5 646 aa12.98□□□□□ -0.33
SCN9A-205ENST00000454569 TAF1DQ9H5J8 278 aaPredicted RBP12.98□□□□□ -0.33
SCN9A-205ENST00000454569 TMOD2Q9NZR1 351 aa12.98□□□□□ -0.33
SCN9A-205ENST00000454569 FZD1Q9UP38 647 aa12.98□□□□□ -0.33
SCN9A-205ENST00000454569 MAP3K13O43283 966 aa12.98□□□□□ -0.33
SCN9A-205ENST00000454569 RANBP6O60518 1105 aaKnown RBP12.98□□□□□ -0.33
SCN9A-205ENST00000454569 NBPF12Q5TAG4 269 aaPredicted RBP12.98□□□□□ -0.33
SCN9A-205ENST00000454569 MIGA2Q7L4E1 593 aa12.98□□□□□ -0.33
SCN9A-205ENST00000454569 TTC6Q86TZ1 520 aa12.98□□□□□ -0.33
SCN9A-205ENST00000454569 FAM83AQ86UY5 434 aa12.98□□□□□ -0.33
SCN9A-205ENST00000454569 IGDCC4Q8TDY8 1250 aa12.98□□□□□ -0.33
SCN9A-205ENST00000454569 ZNF526Q8TF50 670 aaPredicted RBP12.98□□□□□ -0.33
SCN9A-205ENST00000454569 CSRNP1Q96S65 589 aa12.98□□□□□ -0.33
SCN9A-205ENST00000454569 DEFB129Q9H1M3 183 aa12.98□□□□□ -0.33
SCN9A-205ENST00000454569 RRAGCQ9HB90 399 aa12.98□□□□□ -0.33
SCN9A-205ENST00000454569 COL2A1P02458 1487 aaPredicted RBP12.97□□□□□ -0.33
SCN9A-205ENST00000454569 RALYLQ86SE5 291 aaKnown RBP12.97□□□□□ -0.33
SCN9A-205ENST00000454569 METTL16Q86W50 562 aaKnown RBP12.97□□□□□ -0.33
SCN9A-205ENST00000454569 SNX21Q969T3 373 aa12.97□□□□□ -0.33
SCN9A-205ENST00000454569 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.97□□□□□ -0.33
SCN9A-205ENST00000454569 DHX36Q9H2U1 1008 aaKnown RBP12.97□□□□□ -0.33
SCN9A-205ENST00000454569 NMRK2Q9NPI5 230 aa12.97□□□□□ -0.33
SCN9A-205ENST00000454569 IL17RBQ9NRM6 502 aa12.97□□□□□ -0.33
SCN9A-205ENST00000454569 PI4KBQ9UBF8 816 aa12.97□□□□□ -0.33
SCN9A-205ENST00000454569 SERPINB13Q9UIV8 391 aa12.97□□□□□ -0.33
SCN9A-205ENST00000454569 ADM5C9JUS6 153 aa12.96□□□□□ -0.33
SCN9A-205ENST00000454569 AKR1B1P15121 316 aa12.96□□□□□ -0.33
SCN9A-205ENST00000454569 MCM5P33992 734 aa12.96□□□□□ -0.33
SCN9A-205ENST00000454569 TFAP4Q01664 338 aa12.96□□□□□ -0.33
SCN9A-205ENST00000454569 APOBRQ0VD83 1088 aa12.96□□□□□ -0.33
SCN9A-205ENST00000454569 CLEC10AQ8IUN9 316 aa12.96□□□□□ -0.33
SCN9A-205ENST00000454569 BRF1Q92994 677 aa12.96□□□□□ -0.33
SCN9A-205ENST00000454569 AGXT2Q9BYV1 514 aa12.96□□□□□ -0.33
SCN9A-205ENST00000454569 KRT23Q9C075 422 aa12.96□□□□□ -0.33
SCN9A-205ENST00000454569 EHD4Q9H223 541 aa12.96□□□□□ -0.33
SCN9A-205ENST00000454569 RNF41Q9H4P4 317 aaPredicted RBP12.96□□□□□ -0.33
SCN9A-205ENST00000454569 MKNK2Q9HBH9 465 aa12.96□□□□□ -0.33
SCN9A-205ENST00000454569 BRPF3Q9ULD4 1205 aa12.96□□□□□ -0.33
SCN9A-205ENST00000454569 TPCN1Q9ULQ1 816 aa12.96□□□□□ -0.33
SCN9A-205ENST00000454569 SSC5DA1L4H1 1573 aa12.96□□□□□ -0.34
SCN9A-205ENST00000454569 HLA-DOAP06340 250 aa12.95□□□□□ -0.34
SCN9A-205ENST00000454569 FMR1Q06787 632 aaKnown RBP eCLIP12.95□□□□□ -0.34
SCN9A-205ENST00000454569 PDE4BQ07343 736 aa12.95□□□□□ -0.34
SCN9A-205ENST00000454569 ST3GAL1Q11201 340 aa12.95□□□□□ -0.34
SCN9A-205ENST00000454569 TRDNQ13061 729 aa12.95□□□□□ -0.34
SCN9A-205ENST00000454569 SEC23AQ15436 765 aa12.95□□□□□ -0.34
SCN9A-205ENST00000454569 EAPPQ56P03 285 aaPredicted RBP12.95□□□□□ -0.34
SCN9A-205ENST00000454569 RAB11FIP4Q86YS3 637 aa12.95□□□□□ -0.34
SCN9A-205ENST00000454569 FOXP4Q8IVH2 680 aaPredicted RBP12.95□□□□□ -0.34
SCN9A-205ENST00000454569 AMOTL1Q8IY63 956 aa12.95□□□□□ -0.34
SCN9A-205ENST00000454569 ALDH8A1Q9H2A2 487 aaPredicted RBP12.95□□□□□ -0.34
SCN9A-205ENST00000454569 CNNM2Q9H8M5 875 aa12.95□□□□□ -0.34
SCN9A-205ENST00000454569 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.95□□□□□ -0.34
SCN9A-205ENST00000454569 BAZ2BQ9UIF8 2168 aaKnown RBP12.95□□□□□ -0.34
SCN9A-205ENST00000454569 SH2B2O14492 632 aaPredicted RBP12.94□□□□□ -0.34
SCN9A-205ENST00000454569 SLC3A2P08195 630 aaKnown RBP12.94□□□□□ -0.34
SCN9A-205ENST00000454569 HMGB1P09429 215 aaKnown RBP12.94□□□□□ -0.34
SCN9A-205ENST00000454569 ME3Q16798 604 aa12.94□□□□□ -0.34
SCN9A-205ENST00000454569 RCSD1Q6JBY9 416 aa12.94□□□□□ -0.34
SCN9A-205ENST00000454569 TATDN1Q6P1N9 297 aa12.94□□□□□ -0.34
SCN9A-205ENST00000454569 USP50Q70EL3 339 aaPredicted RBP12.94□□□□□ -0.34
SCN9A-205ENST00000454569 ESR2Q92731 530 aa12.94□□□□□ -0.34
SCN9A-205ENST00000454569 LY9Q9HBG7 655 aa12.94□□□□□ -0.34
SCN9A-205ENST00000454569 OTOFQ9HC10 1997 aa12.94□□□□□ -0.34
SCN9A-205ENST00000454569 TSPY2A6NKD2 308 aa12.94□□□□□ -0.34
SCN9A-205ENST00000454569 IFIT3O14879 490 aaKnown RBP12.94□□□□□ -0.34
SCN9A-205ENST00000454569 ST18O60284 1047 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms